BLASTX nr result
ID: Coptis25_contig00011265
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00011265 (2091 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containi... 652 0.0 ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|2... 622 e-176 ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containi... 588 e-165 ref|XP_003618546.1| Pentatricopeptide repeat-containing protein ... 578 e-162 ref|XP_002873720.1| pentatricopeptide repeat-containing protein ... 545 e-152 >ref|XP_002278719.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial-like [Vitis vinifera] Length = 632 Score = 652 bits (1683), Expect = 0.0 Identities = 331/608 (54%), Positives = 434/608 (71%), Gaps = 7/608 (1%) Frame = -3 Query: 1948 TTLSHYYRSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALLHLYATCNIPISA 1769 +++S +YR LLR+ AR++SL ++LHAT++ G+A +P T+L NALL YA+C A Sbjct: 10 SSVSRHYRFLLRSCARESSLDIGERLHATIITTGIAGAPETFLHNALLQFYASCGCAWQA 69 Query: 1768 HKLFDEIPNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQEENIDIDEVTFVSVFAACS 1589 K+FDEIP+ H DTVDWTTLM C+VR+ + D+AL +F M+ + DEVT V +F C+ Sbjct: 70 RKVFDEIPHSHKDTVDWTTLMGCFVRHNVSDEALLIFVEMRRCGVKPDEVTLVCLFGGCA 129 Query: 1588 KVGDVKCGMHGYGWMIKRGLPFIVSVSNAVMDMYVKCGRMKDGRRVFDEMSEKSVVSWSV 1409 ++GDV G G+G M+K GL + NAVMDMY K G M + RRVF EM +SVVSW+V Sbjct: 130 RLGDVVVGAQGHGCMVKMGLGGVEKACNAVMDMYAKSGLMGEARRVFYEMKGQSVVSWTV 189 Query: 1408 MLNGVIKFEGVEKGRCWFDEMPERNEVSWTLMIAGYIENGFSREAFSLVSDMMSGMCFEL 1229 +L+GVI+ EGV GR FDEMPERNEV+WT+MIAGY+++G ++E+F+LV +M+ + EL Sbjct: 190 ILDGVIRSEGVRNGRVVFDEMPERNEVAWTIMIAGYLDSGLTQESFALVREMIFDLEMEL 249 Query: 1228 NHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTALVDMYSKCGQIDIACKV 1049 N+VTLCS L ACS SG+L+MG+WVH YA+KT EK++++MVGTA+VDMY+KCG+I IA K Sbjct: 250 NYVTLCSILTACSQSGDLMMGRWVHAYALKTKEKELNIMVGTAMVDMYAKCGRIHIAFKF 309 Query: 1048 FETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTFVAVLSACNHSGLVD 869 F+ M RNVV+WNA+L GLAMHG G +AL++F +M +E KPDDVTF +VLSAC+HSGLVD Sbjct: 310 FKKMPQRNVVSWNAMLSGLAMHGLGRAALDIFPQMFKEAKPDDVTFTSVLSACSHSGLVD 369 Query: 868 QGFQYFYDLGTRYGLMPKIEHYACMVDLLGRAGRIEEAEFLVKGMPIPPNEVILGSXXXX 689 QG YF +L + YG+ PK+EHYACMVDLLGRAGR+EEAE LV+ MPI PNEV+LGS Sbjct: 370 QGCFYFGNLESVYGITPKVEHYACMVDLLGRAGRLEEAEILVREMPIRPNEVVLGSLLGS 429 Query: 688 XXXXXXXXXXXXXLQELIQIAPLNTEYHVLLSNMHTLAGRKDEADSLRQILKNRRITKVP 509 LQEL+Q+ P NTEYH+LLSNM+ LAG+++ A+SLRQ+LK R I KVP Sbjct: 430 CSIHGKLQLGEHLLQELVQLDPQNTEYHILLSNMYALAGKQNRANSLRQVLKKRGIKKVP 489 Query: 508 GMSSIQVDGLVHHFSSGDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXLD 329 GMSSI V G VH FS+GDKSHP+T++VY MLDEM +LRL GY PN D Sbjct: 490 GMSSIHVGGQVHQFSAGDKSHPRTREVYNMLDEMIPRLRLAGYAPNTALQTFAGCDSLED 549 Query: 328 N-VNLKEKERVLFFQ*EVGHLLW------TRMLLHI*RNLKICQDCHCAALKHGHI*NSI 170 + V +EKE+ LF E + + + LHI +NL+ICQDCH A I N Sbjct: 550 DLVEQEEKEQALFSHSEKLAICFGLISTGPGVPLHIFKNLRICQDCHSAIKIVSKIYNRE 609 Query: 169 VSVLDTHR 146 + + D +R Sbjct: 610 IVIRDRNR 617 >ref|XP_002324074.1| predicted protein [Populus trichocarpa] gi|222867076|gb|EEF04207.1| predicted protein [Populus trichocarpa] Length = 636 Score = 622 bits (1605), Expect = e-176 Identities = 322/604 (53%), Positives = 422/604 (69%), Gaps = 9/604 (1%) Frame = -3 Query: 1930 YRSLLRTYARQTSLLKAQKLHATLVKNGLASS-PSTYLRNALLHLYATCNIPISAHKLFD 1754 +RSLLR+ AR +SL +KLHA ++ +GLASS P+T+L NAL HLYA+C + SA LF Sbjct: 18 FRSLLRSCARNSSLSTGKKLHAVILTSGLASSSPNTFLLNALHHLYASCGVTSSARHLFY 77 Query: 1753 EIPNMHMDTVDWTTLMSCYVRNGL-PDKALFLFRVMQEENIDIDEVTFVSVFAACSKVGD 1577 +IP H D DWTTL++ V++G P + F F+ M++E + +D+V +SVF C++V D Sbjct: 78 QIPRSHKDVTDWTTLLTSLVQHGTKPSEGFFFFKEMRKEGVVLDDVAMISVFVLCTRVED 137 Query: 1576 VKCGMHGYGWMIKRGLPFIVSVSNAVMDMYVKCGRMKDGRRVFDEMSEKSVVSWSVMLNG 1397 + G G ++K GL V V NA+M+MYVKCG +++ RRVF EM+E++VVSWS +L G Sbjct: 138 LGMGRQAQGCLVKMGLGLGVKVCNAIMNMYVKCGLVEEVRRVFCEMNERNVVSWSTLLEG 197 Query: 1396 VIKFEGVEKGRCWFDEMPERNEVSWTLMIAGYIENGFSREAFSLVSDMMSGMCFELNHVT 1217 V+K+EGVE GR FDEMPERNEV WT+MIAGY+ NGFSRE F L+ +M+ LN VT Sbjct: 198 VVKWEGVENGRVVFDEMPERNEVGWTIMIAGYVGNGFSREGFLLLDEMVLRFRLGLNFVT 257 Query: 1216 LCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTALVDMYSKCGQIDIACKVFETM 1037 L S L AC+ SG++LMG+WVHVYA+K M ++MH+MVGTALVDMY+KCG ID+A KVF+ + Sbjct: 258 LSSILSACAQSGDVLMGRWVHVYALKGMGREMHIMVGTALVDMYAKCGPIDMAFKVFKYL 317 Query: 1036 AYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTFVAVLSACNHSGLVDQGFQ 857 RNVVAWNA+L GLAMHGRG L++F +M+ E KPDD+TF+AVLSAC+HSGLVDQG+ Sbjct: 318 PKRNVVAWNAMLGGLAMHGRGKFVLDIFPKMIEEAKPDDLTFMAVLSACSHSGLVDQGYH 377 Query: 856 YFYDLGTRYGLMPKIEHYACMVDLLGRAGRIEEAEFLVKGMPIPPNEVILGSXXXXXXXX 677 YF L + YG PKIEHYACMVD+LGRAG +EEA L+K MP+ PNEV+LGS Sbjct: 378 YFRSLESEYGTTPKIEHYACMVDILGRAGHLEEAVMLIKKMPMCPNEVVLGSLLGSCNAH 437 Query: 676 XXXXXXXXXLQELIQIAPLNTEYHVLLSNMHTLAGRKDEADSLRQILKNRRITKVPGMSS 497 LQELIQ+ NTEYHVLLSNM+ L G++D+A+SLRQILK++ I KVPG+SS Sbjct: 438 GKLQLGERILQELIQMDGHNTEYHVLLSNMYVLEGKQDKANSLRQILKSKGIRKVPGVSS 497 Query: 496 IQVDGLVHHFSSGDKSHPQTQDVYLMLDEMSQKLRLVGYIPN-NXXXXXXXXXXXLDNVN 320 I V G +H FS+GDKSHP T+++Y L+ M Q+LRL GY+PN + Sbjct: 498 IYVGGNIHQFSAGDKSHPLTKEIYHALNNMIQRLRLAGYVPNTTNQVFPGSDGREGSSEE 557 Query: 319 LKEKERVLFFQ*E-----VGHL-LWTRMLLHI*RNLKICQDCHCAALKHGHI*NSIVSVL 158 ++EKE+ LF E GH+ L+I +NL+ICQDCH A I N + + Sbjct: 558 MEEKEQALFLHSEKLAVCFGHISTKPGAPLYIFKNLRICQDCHSAIKIVSKIYNREIVIR 617 Query: 157 DTHR 146 D +R Sbjct: 618 DRNR 621 >ref|XP_003554900.1| PREDICTED: pentatricopeptide repeat-containing protein At5g15340, mitochondrial-like [Glycine max] Length = 629 Score = 588 bits (1516), Expect = e-165 Identities = 316/622 (50%), Positives = 413/622 (66%), Gaps = 12/622 (1%) Frame = -3 Query: 1975 MRWPIIGPHTTLSH---YYRSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALL 1805 MRW HTT +RSLLR AR +++ ++LHA +GL SPS++L NALL Sbjct: 1 MRWS----HTTQQQCALIFRSLLRQCARASAVRPGEQLHAAATVSGLLFSPSSFLLNALL 56 Query: 1804 HLYATCNIPISAHKLFDEIPNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQEENIDID 1625 HLYA+C +P A KLFD IP+ H D+VD+T L+ C P AL + M++ + +D Sbjct: 57 HLYASCPLPSHARKLFDRIPHSHKDSVDYTALIRC----SHPLDALRFYLQMRQRALPLD 112 Query: 1624 EVTFVSVFAACSKVGDVKCGMHGYGWMIKRGLPFIVSVSNAVMDMYVKCGRMKDGRRVFD 1445 V + ACSK+GD + ++K G V N VMD YVKCG + + RRVF+ Sbjct: 113 GVALICALGACSKLGDSNLVPQMHVGVVKFGFLRHTKVLNGVMDGYVKCGLVGEARRVFE 172 Query: 1444 EMSEKSVVSWSVMLNGVIKFEGVEKGRCWFDEMPERNEVSWTLMIAGYIENGFSREAFSL 1265 E+ E SVVSW+V+L GV+K EGVE G+ FDEMPERNEV+WT++I GY+ +GF++EAF L Sbjct: 173 EIEEPSVVSWTVVLEGVVKCEGVESGKVVFDEMPERNEVAWTVLIKGYVGSGFTKEAFLL 232 Query: 1264 VSDMM--SGMCFELNHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTALVD 1091 + +M+ G F LN +TLCS L ACS SG++ +G+WVH YA+K + D+ +MVGT+LVD Sbjct: 233 LKEMVFGCGFGFGLNSITLCSVLSACSQSGDVSVGRWVHCYAVKAVGWDLGVMVGTSLVD 292 Query: 1090 MYSKCGQIDIACKVFETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTF 911 MY+KCG+I A VF M RNVVAWNA+L GLAMHG G +E+F+ MV EVKPD VTF Sbjct: 293 MYAKCGRISAALMVFRHMPRRNVVAWNAMLCGLAMHGMGKVVVEMFACMVEEVKPDAVTF 352 Query: 910 VAVLSACNHSGLVDQGFQYFYDLGTRYGLMPKIEHYACMVDLLGRAGRIEEAEFLVKGMP 731 +A+LS+C+HSGLV+QG+QYF+DL YG+ P+IEHYACMVDLLGRAGR+EEAE LVK +P Sbjct: 353 MALLSSCSHSGLVEQGWQYFHDLERAYGIRPEIEHYACMVDLLGRAGRLEEAEDLVKKLP 412 Query: 730 IPPNEVILGSXXXXXXXXXXXXXXXXXLQELIQIAPLNTEYHVLLSNMHTLAGRKDEADS 551 IPPNEV+LGS ++EL+Q+ PLNTEYH+LLSNM+ L G+ D+A+S Sbjct: 413 IPPNEVVLGSLLGACYAHGKLRLGEKIMRELVQMDPLNTEYHILLSNMYALCGKADKANS 472 Query: 550 LRQILKNRRITKVPGMSSIQVDGLVHHFSSGDKSHPQTQDVYLMLDEMSQKLRLVGYIPN 371 LR++LKNR I KVPGMSSI VDG +H F +GDKSHP+T D+Y+ LD+M KLRL GY+PN Sbjct: 473 LRKVLKNRGIRKVPGMSSIYVDGQLHRFIAGDKSHPRTADIYMKLDDMICKLRLAGYVPN 532 Query: 370 NXXXXXXXXXXXLDNVN-LKEKERVLFFQ*EVGHLLWTRML------LHI*RNLKICQDC 212 D + +E E+VLF E L + M L I +NL+ICQDC Sbjct: 533 TNCQVLFGCSNGDDCMEAFEEVEQVLFTHSEKLALCFGLMSTPSSSPLCIFKNLRICQDC 592 Query: 211 HCAALKHGHI*NSIVSVLDTHR 146 H A I + V D +R Sbjct: 593 HSAIKIASDIYKREIVVRDRYR 614 >ref|XP_003618546.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] gi|355493561|gb|AES74764.1| Pentatricopeptide repeat-containing protein [Medicago truncatula] Length = 637 Score = 578 bits (1491), Expect = e-162 Identities = 303/610 (49%), Positives = 416/610 (68%), Gaps = 9/610 (1%) Frame = -3 Query: 1948 TTLSHYYRSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALLHLYATCNIPISA 1769 ++L+ ++RSLLR +R T+L Q+LHAT + GL SSP+ +LRNALLHLY +C++P A Sbjct: 17 SSLALHFRSLLRQCSRATALRPGQQLHATAIVTGLISSPNHFLRNALLHLYGSCSLPSHA 76 Query: 1768 HKLFDEIPNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQEENIDIDEVTFVSVFAACS 1589 KLFDEIP H D+VD+T L +R+ P ++L LF M++ ++ +D V V AC+ Sbjct: 77 RKLFDEIPQSHKDSVDYTAL----IRHCPPFESLKLFIQMRQFDLPLDGVVMVCALNACA 132 Query: 1588 KVG--DVKCGMHGYGWMIKRGLPFIVSVSNAVMDMYVKCGRMKDGRRVFDEMSEKSVVSW 1415 ++G D K G + ++K G V NA+M++YVK G + + R++F+ + +SVVSW Sbjct: 133 RLGGGDTKVGSQMHVGVVKFGFVKFDKVCNALMNVYVKFGLVGEARKMFEGIEVRSVVSW 192 Query: 1414 SVMLNGVIKFEGVEKGRCWFDEMPERNEVSWTLMIAGYIENGFSREAFSLVSDMMSGMCF 1235 S L G++K+E VE GR FDEMPERNEV+WT+MI GY+ NGF++EAF L+ +M+ G F Sbjct: 193 SCFLEGLVKWESVESGRVLFDEMPERNEVAWTVMIVGYVGNGFTKEAFLLLKEMVFGCGF 252 Query: 1234 ELNHVTLCSFLGACSLSGNLLMGKWVHVYAMKTMEKDMHLMVGTALVDMYSKCGQIDIAC 1055 L+ VTLCS L ACS SG++ +G+WVH YA+K M D +MVGT+LVDMY+KCG+I+ A Sbjct: 253 RLSFVTLCSVLSACSQSGDVCVGRWVHCYAVKEMGLDFGVMVGTSLVDMYAKCGRINAAL 312 Query: 1054 KVFETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTFVAVLSACNHSGL 875 VF +M RNVVAWNA+L GLAMHG G A+++F MV EVKPD VTF+A+LSAC+HSGL Sbjct: 313 SVFRSMLKRNVVAWNAMLGGLAMHGMGKIAVDMFPSMVEEVKPDGVTFMALLSACSHSGL 372 Query: 874 VDQGFQYFYDLGTRYGLMPKIEHYACMVDLLGRAGRIEEAEFLVKGMPIPPNEVILGSXX 695 V++G+ YF+DL Y + P+IEHYACMV LLGRAGR+EEAE +VK M IPPNEV+LGS Sbjct: 373 VEKGWDYFHDLEPVYRIKPEIEHYACMVGLLGRAGRLEEAEIMVKNMRIPPNEVVLGSLI 432 Query: 694 XXXXXXXXXXXXXXXLQELIQIAPLNTEYHVLLSNMHTLAGRKDEADSLRQILKNRRITK 515 +++L+++ PLNTEYH++LSNM+ L+G+ ++A+SLRQ+LK R I K Sbjct: 433 GSCYAHGRLQLGEKIMRDLLEMDPLNTEYHIVLSNMYALSGKVEKANSLRQVLKKRGIKK 492 Query: 514 VPGMSSIQVDGLVHHFSSGDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXX 335 VPGMSSI VDG +H F +GDKSH +T ++Y+ LDEM +LR GY+PN Sbjct: 493 VPGMSSIYVDGKLHQFIAGDKSHTRTSEIYMKLDEMICRLRSAGYVPNTSCQVLFGCSNR 552 Query: 334 LD-NVNLKEKERVLFFQ*EVGHLLWTRML------LHI*RNLKICQDCHCAALKHGHI*N 176 D + +L+E E+VLF E L + M LHI +NL+ICQDCH A + Sbjct: 553 DDCSESLEEVEQVLFTHSEKLALCFGLMSTPSGSPLHIFKNLRICQDCHSAIKIASKVYK 612 Query: 175 SIVSVLDTHR 146 + V D +R Sbjct: 613 REIVVRDRYR 622 >ref|XP_002873720.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] gi|297319557|gb|EFH49979.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata subsp. lyrata] Length = 623 Score = 545 bits (1405), Expect = e-152 Identities = 288/587 (49%), Positives = 395/587 (67%), Gaps = 12/587 (2%) Frame = -3 Query: 1927 RSLLRTYARQTSLLKAQKLHATLVKNGLASSPSTYLRNALLHLYATCNIPISAHKLFDEI 1748 R LLR A ++ L ++LHA L +GL +P +YL NAL YA+ +A KLFDEI Sbjct: 10 RLLLRQSAHRSFLHPGRELHAVLTTSGLKKAPRSYLSNALFQFYASSGEIATAQKLFDEI 69 Query: 1747 PNMHMDTVDWTTLMSCYVRNGLPDKALFLFRVMQEENIDIDEVTFVSVFAACSKVGDVKC 1568 P D VDWTTL+S + R GL ++ LF M+ + ++ID V+ V +F C+K+ D++ Sbjct: 70 PLSDKDNVDWTTLLSSFSRFGLLVNSMKLFVEMRRKRVEIDHVSLVCLFGVCAKLEDLRF 129 Query: 1567 GMHGYGWMIKRGLPFIVSVSNAVMDMYVKCGRMKDGRRVFDEMSEKSVVSWSVMLNGVIK 1388 G G+G +K G V V NA+MDMY KCG + + +R+F + EKSVVSW+V+L+ ++K Sbjct: 130 GEQGHGVAVKMGFLTSVKVCNALMDMYGKCGFVSEVKRIFQALEEKSVVSWTVVLDTLVK 189 Query: 1387 FEGVEKGRCWFDEMPERNEVSWTLMIAGYIENGFSREAFSLVSDMMSGMCFELNHVTLCS 1208 +EG+++GR FDEMPERN V+WTLM+AGY+ GF+RE L+++M+ LN VTLCS Sbjct: 190 WEGLKRGREVFDEMPERNVVAWTLMVAGYLGAGFTREVLELLAEMVFRCGHGLNFVTLCS 249 Query: 1207 FLGACSLSGNLLMGKWVHVYAMKTM----EKDMH--LMVGTALVDMYSKCGQIDIACKVF 1046 L AC+ SGNL++G+WVHVYA+K E++ + +MVGTALVDMY+KCG ID + KVF Sbjct: 250 MLSACAQSGNLVIGRWVHVYALKKAMMMGEEETYDGVMVGTALVDMYAKCGNIDSSIKVF 309 Query: 1045 ETMAYRNVVAWNALLIGLAMHGRGTSALELFSRMVREVKPDDVTFVAVLSACNHSGLVDQ 866 M RNVV WNAL GLAMHG+G +++F MVREVKPDD+TF A+LSAC+H G+VD+ Sbjct: 310 RLMRKRNVVTWNALFSGLAMHGKGRMVIDMFPEMVREVKPDDLTFTALLSACSHLGMVDE 369 Query: 865 GFQYFYDLGTRYGLMPKIEHYACMVDLLGRAGRIEEAEFLVKGMPIPPNEVILGSXXXXX 686 G++ F+ L YGL PK++HYACMVD+LGRAGRIEEAE L++ MP+PPNEV+LGS Sbjct: 370 GWRCFHSL-QFYGLEPKVDHYACMVDILGRAGRIEEAEILMREMPVPPNEVVLGSLLGSC 428 Query: 685 XXXXXXXXXXXXLQELIQIAPLNTEYHVLLSNMHTLAGRKDEADSLRQILKNRRITKVPG 506 +ELIQ++P +TEY +L+SNM+ GR D AD LR L+NR I K+PG Sbjct: 429 SVHGKLEIAERIKRELIQMSPGHTEYQILMSNMYVAEGRSDIADGLRGSLRNRGIRKIPG 488 Query: 505 MSSIQVDGLVHHFSSGDKSHPQTQDVYLMLDEMSQKLRLVGYIPNNXXXXXXXXXXXLDN 326 +SSI V+ VH FSSGD+SHP+T++VYL L+E+ +++R GY+P+ Sbjct: 489 LSSIYVNDSVHRFSSGDRSHPRTKEVYLKLNEVIERIRSAGYVPD------ISGLVSPSE 542 Query: 325 VNLKEKERVLFFQ*E----VGHLLWT--RMLLHI*RNLKICQDCHCA 203 +L+EKE+ L E LL T R L + +NL+IC+DCH A Sbjct: 543 GDLEEKEQALCCHSEKLAVCFGLLETKPRTPLLVFKNLRICRDCHSA 589