BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011261
         (1098 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containi...   221   2e-55
ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containi...   201   3e-49
ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containi...   201   3e-49
ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat...   151   4e-49
ref|XP_003603974.1| Pentatricopeptide repeat-containing protein ...   199   8e-49

>ref|XP_002283651.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065
            [Vitis vinifera] gi|297744424|emb|CBI37686.3| unnamed
            protein product [Vitis vinifera]
          Length = 571

 Score =  221 bits (564), Expect = 2e-55
 Identities = 111/193 (57%), Positives = 138/193 (71%), Gaps = 15/193 (7%)
 Frame = +1

Query: 502  DGYVDDNRSTI*FGIRPTIQHYGCMVDLLARVGHLKEAELFIKRMPIEPDSVVWRNLIWA 681
            +G+   N     +GI+PTIQHYGCMVDLLAR GHL EAE FI++MPIEPD V+WR LIWA
Sbjct: 316  EGFAYFNSMWCKYGIKPTIQHYGCMVDLLARTGHLDEAEEFIRKMPIEPDVVLWRTLIWA 375

Query: 682  CKMHGDHYRGDGLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE--------- 834
             K+HGD  R + LM    LL+MDS D GSYVL GNVYAS G W +KAK+RE         
Sbjct: 376  SKVHGDIDRSEQLMKDRGLLKMDSDDCGSYVLLGNVYASAGKWHDKAKMRELMNQKGLSK 435

Query: 835  ------IEVKGIIHKFFAGDTEHRQAEKIYKKPDEIADQLNTVGYQPKISEVMLDIEDEE 996
                  IEV G++H+F AGD+ H +AEKIY K DE+ ++L   GY PK+SEV+L+I+++E
Sbjct: 436  PPGCSRIEVDGLVHEFAAGDSGHIEAEKIYAKLDEVEERLKAEGYHPKLSEVLLEIDNKE 495

Query: 997  KAFQLHHNSEKLA 1035
            KAFQL H+SEKLA
Sbjct: 496  KAFQLRHHSEKLA 508



 Score =  143 bits (360), Expect(2) = 2e-37
 Identities = 71/133 (53%), Positives = 94/133 (70%), Gaps = 2/133 (1%)
 Frame = +3

Query: 84  SLSKLFNFTALSHSGNFSYARKIFDSLPRPNSYFWNTIIRAYAKSTEPEQALHLFLSM-- 257
           +L+ LF F ALS +G+ +YA  I +SL   NS+F NT+IRAY+++ +P QALHLFLSM  
Sbjct: 28  NLTPLFTFAALSPAGDLTYAHLILNSLSTQNSFFHNTMIRAYSQTPDPTQALHLFLSMLC 87

Query: 258 QHKDHKPDKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGES 437
           Q    +PDKFTYPF+LKSC  L +   GKQ H L+YK+GL+SDRY+ N LIHMY  CG+S
Sbjct: 88  QPTSPRPDKFTYPFLLKSCARLKQPRVGKQLHGLIYKSGLESDRYVSNGLIHMYSSCGKS 147

Query: 438 DCATRV*ANVEER 476
             A +V   + +R
Sbjct: 148 GRAYKVFGKMRDR 160



 Score = 40.0 bits (92), Expect(2) = 2e-37
 Identities = 16/26 (61%), Positives = 23/26 (88%)
 Frame = +1

Query: 451 VFEQMSKKDVVTWTSIIDGYVDDNRS 528
           VF +M  +DVV+WTS+IDG+VDD+R+
Sbjct: 153 VFGKMRDRDVVSWTSMIDGFVDDDRA 178


>ref|XP_003523513.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like
            [Glycine max]
          Length = 542

 Score =  201 bits (511), Expect = 3e-49
 Identities = 108/262 (41%), Positives = 149/262 (56%), Gaps = 60/262 (22%)
 Frame = +1

Query: 439  IVRHVFEQMSKKDVVTWTSIIDG-------------YVDDNRSTI*-------------- 537
            IVR VF+ +  +DV  WT++I G             +VD   S +               
Sbjct: 221  IVRKVFDDVVDRDVFVWTAMISGLASHGLCKDAIDMFVDMESSGVKPDERTVTTVLTACR 280

Query: 538  ------------------FGIRPTIQHYGCMVDLLARVGHLKEAELFIKRMPIEPDSVVW 663
                              +G++P+IQH+GC+VDLLAR G LKEAE F+  MPIEPD+V+W
Sbjct: 281  NAGLIREGFMLFSDVQRRYGMKPSIQHFGCLVDLLARAGRLKEAEDFVNAMPIEPDAVLW 340

Query: 664  RNLIWACKMHGDHYRGDGLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE--- 834
            R LIWACK+HGD  R + LM   ++  M + DSGSY+L  NVYAS G WC KA+VRE   
Sbjct: 341  RTLIWACKVHGDDDRAERLMKHLEIQDMRADDSGSYILTSNVYASTGKWCNKAEVRELMN 400

Query: 835  ------------IEVKGIIHKFFAGDTEHRQAEKIYKKPDEIADQLNTVGYQPKISEVML 978
                        IE+ G +H+F  GD  H +AE+I+ +  E+ D++   GY P++SEV+L
Sbjct: 401  KKGLVKPLGSSRIEIDGGVHEFVMGDYNHPEAEEIFVELAEVMDKIRKEGYDPRVSEVLL 460

Query: 979  DIEDEEKAFQLHHNSEKLAYCW 1044
            +++DEEKA QL H+SEKLA  +
Sbjct: 461  EMDDEEKAVQLLHHSEKLALAY 482



 Score = 70.1 bits (170), Expect(2) = 3e-13
 Identities = 43/117 (36%), Positives = 59/117 (50%)
 Frame = +3

Query: 84  SLSKLFNFTALSHSGNFSYARKIFDSLPRPNSYFWNTIIRAYAKSTEPEQALHLFLSMQH 263
           +LSK+F+F ALS  G+ +YAR +  + P       +T   ++A S +P            
Sbjct: 21  NLSKVFSFAALSPFGDLNYARLLLSTNP-------STTTLSFAPSPKPPTP--------- 64

Query: 264 KDHKPDKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGE 434
               P  FT+PF+LK C        GKQ HAL+ K G   D YIQN L+HMY   G+
Sbjct: 65  ----PYNFTFPFLLKCCAPSKLPPLGKQLHALLTKLGFAPDLYIQNVLVHMYSEFGD 117



 Score = 32.0 bits (71), Expect(2) = 3e-13
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +1

Query: 439 IVRHVFEQMSKKDVVTWTSIIDGYVD 516
           + R +F++M  +DVV+WTS+I G V+
Sbjct: 120 LARSLFDRMPHRDVVSWTSMISGLVN 145


>ref|XP_003543566.1| PREDICTED: pentatricopeptide repeat-containing protein At4g21065-like
            [Glycine max]
          Length = 572

 Score =  201 bits (510), Expect = 3e-49
 Identities = 113/291 (38%), Positives = 160/291 (54%), Gaps = 60/291 (20%)
 Frame = +1

Query: 352  MHWCTRLAFNLIDIYKTLSFICTAIAVSQIVRHVFEQMSKKDVVTWTSIIDG-------- 507
            +H  + ++  L+D+Y     I +A       R VF+ +  +DV  WT++I G        
Sbjct: 229  IHSKSNVSTALVDMYAKGGCIASA-------RKVFDDVVHRDVFVWTAMISGLASHGLCK 281

Query: 508  -----YVDDNRSTI*--------------------------------FGIRPTIQHYGCM 576
                 +VD   S +                                 +G++P+IQH+GC+
Sbjct: 282  DAIDMFVDMESSGVKPDERTVTAVLTACRNAGLIREGFMLFSDVQRRYGMKPSIQHFGCL 341

Query: 577  VDLLARVGHLKEAELFIKRMPIEPDSVVWRNLIWACKMHGDHYRGDGLMNQNQLLQMDSS 756
            VDLLAR G LKEAE F+  MPIEPD+V+WR LIWACK+HGD  R + LM   ++  M + 
Sbjct: 342  VDLLARAGRLKEAEDFVNAMPIEPDTVLWRTLIWACKVHGDADRAERLMKHLEIQDMRAD 401

Query: 757  DSGSYVLYGNVYASNGNWCEKAKVRE---------------IEVKGIIHKFFAGDTEHRQ 891
            DSGSY+L  NVYAS G WC KA+VRE               IEV G +H+F  GD  H +
Sbjct: 402  DSGSYILASNVYASTGKWCNKAEVRELMNKKGLVKPPGTSRIEVDGGVHEFVMGDYNHPE 461

Query: 892  AEKIYKKPDEIADQLNTVGYQPKISEVMLDIEDEEKAFQLHHNSEKLAYCW 1044
            AE+I+ +  E+ D++   GY P++SEV+L+++DEEKA QL H+SEKLA  +
Sbjct: 462  AEEIFVELAEVVDKIRKEGYDPRVSEVLLEMDDEEKAVQLLHHSEKLALAY 512



 Score =  103 bits (256), Expect(2) = 6e-23
 Identities = 56/119 (47%), Positives = 74/119 (62%), Gaps = 3/119 (2%)
 Frame = +3

Query: 87  LSKLFNFTALSHSGNFSYARKIFDSLPRPNSYFWNTIIRAYAKS---TEPEQALHLFLSM 257
           LSK+F F ALS  G+ +YAR +  + P  NSY++NT++RA++++   T P  AL LFLSM
Sbjct: 30  LSKVFTFAALSPFGDLNYARLLLSTNPTLNSYYYNTLLRAFSQTPLPTPPFHALSLFLSM 89

Query: 258 QHKDHKPDKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGE 434
                 PD FT+PF+LK C        GKQ HAL+ K G   D YIQN L+HMY   G+
Sbjct: 90  PSP---PDNFTFPFLLKCCSRSKLPPLGKQLHALLTKLGFAPDLYIQNVLLHMYSEFGD 145



 Score = 31.6 bits (70), Expect(2) = 6e-23
 Identities = 12/26 (46%), Positives = 20/26 (76%)
 Frame = +1

Query: 439 IVRHVFEQMSKKDVVTWTSIIDGYVD 516
           + R +F++M  +DVV+WTS+I G V+
Sbjct: 148 LARSLFDRMPHRDVVSWTSMIGGLVN 173


>ref|XP_002264123.1| PREDICTED: putative pentatricopeptide repeat-containing protein
            At3g15930 [Vitis vinifera]
          Length = 724

 Score =  151 bits (381), Expect(2) = 4e-49
 Identities = 89/224 (39%), Positives = 124/224 (55%), Gaps = 29/224 (12%)
 Frame = +1

Query: 451  VFEQMSKK----DVVTWTSII-----DGYVDDN-----RSTI*FGIRPTIQHYGCMVDLL 588
            +F QM K     D VT   ++      G VD       R T   GI P + HYGCMVDLL
Sbjct: 440  MFSQMLKASITPDEVTCIGVLCACTHSGMVDKGKKFFARMTTQHGIEPNVAHYGCMVDLL 499

Query: 589  ARVGHLKEAELFIKRMPIEPDSVVWRNLIWACKMHGDHYRGDGLMNQNQLLQMDSSDSGS 768
             R GHLKEA   IK MP++P+S+VW +L+ AC++H D    +  M   Q+L+++  +   
Sbjct: 500  GRAGHLKEAHEVIKNMPVKPNSIVWGSLLGACRVHRDEEMAE--MAAQQILELEPENGAV 557

Query: 769  YVLYGNVYASNGNWCEKAKVRE---------------IEVKGIIHKFFAGDTEHRQAEKI 903
            YVL  N+YA+   W +  +VR+               IE+ G +H+F AGD  H Q+++I
Sbjct: 558  YVLLCNIYAACNRWEKLHEVRKLMMDRGIKKTPGCSLIEMNGSVHEFVAGDQVHPQSKEI 617

Query: 904  YKKPDEIADQLNTVGYQPKISEVMLDIEDEEKAFQLHHNSEKLA 1035
            Y K DE++  L   GY P  SEV LDI +EEK   ++ +SEKLA
Sbjct: 618  YSKLDEMSVDLKFAGYSPDTSEVFLDIGEEEKESAVYRHSEKLA 661



 Score = 71.2 bits (173), Expect(2) = 4e-49
 Identities = 37/116 (31%), Positives = 59/116 (50%)
 Frame = +3

Query: 108 TALSHSGNFSYARKIFDSLPRPNSYFWNTIIRAYAKSTEPEQALHLFLSMQHKDHKPDKF 287
           T  ++ G    AR  FD +P  +   W  +I  Y +    ++ L LF  MQ  + KPD+F
Sbjct: 294 TGFTNLGQVGLARNYFDKMPERDFVSWTAMIDGYLQVNRFKEVLSLFREMQAANIKPDEF 353

Query: 288 TYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGESDCATRV 455
           T   IL +C  L  ++ G+   A + K  ++ D ++ N+LI MY  CG  + A R+
Sbjct: 354 TMVSILTACAHLGALELGEWIKAYIDKNEIKIDSFVGNALIDMYFNCGNVEKAIRI 409



 Score = 94.4 bits (233), Expect(2) = 1e-20
 Identities = 44/130 (33%), Positives = 74/130 (56%)
 Frame = +3

Query: 66  LVSNILSLSKLFNFTALSHSGNFSYARKIFDSLPRPNSYFWNTIIRAYAKSTEPEQALHL 245
           L+SN +  +++  F      G+  YAR +FD++P PN + WN +I+ Y++   P  A+ +
Sbjct: 47  LISNPIVPAQIIAFCCKHELGDMEYARMVFDTMPGPNHFVWNNMIKGYSRVGCPNSAVSM 106

Query: 246 FLSMQHKDHKPDKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCY 425
           +  M  +   PD++TYPF+LK     + V  G++ H  + K G  S+ ++QN+LIH+Y  
Sbjct: 107 YCEMLERGVMPDEYTYPFLLKRFTRDTAVKCGRELHDHIVKLGFSSNVFVQNALIHLYSL 166

Query: 426 CGESDCATRV 455
            GE   A  V
Sbjct: 167 SGEVSVARGV 176



 Score = 32.3 bits (72), Expect(2) = 1e-20
 Identities = 16/30 (53%), Positives = 20/30 (66%)
 Frame = +1

Query: 439 IVRHVFEQMSKKDVVTWTSIIDGYVDDNRS 528
           + R VF++ SK DVVTW  +I GY   NRS
Sbjct: 172 VARGVFDRSSKGDVVTWNVMISGY---NRS 198



 Score = 71.2 bits (173), Expect = 4e-10
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 4/133 (3%)
 Frame = +3

Query: 90  SKLFNFTALSH----SGNFSYARKIFDSLPRPNSYFWNTIIRAYAKSTEPEQALHLFLSM 257
           S +F   AL H    SG  S AR +FD   + +   WN +I  Y +S + ++++ LF  M
Sbjct: 152 SNVFVQNALIHLYSLSGEVSVARGVFDRSSKGDVVTWNVMISGYNRSKQFDESMKLFDEM 211

Query: 258 QHKDHKPDKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHMYCYCGES 437
           +     P   T   +L +C  L  ++ GK+ H  V    ++  R ++N+LI MY  CG+ 
Sbjct: 212 ERMRVLPSSITLVSVLSACSKLKDLNVGKRVHRYVKDLKIEPVRVLENALIDMYAACGDM 271

Query: 438 DCATRV*ANVEER 476
           D A  +  N++ R
Sbjct: 272 DTALGIFDNMKSR 284


>ref|XP_003603974.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
            gi|355493022|gb|AES74225.1| Pentatricopeptide
            repeat-containing protein [Medicago truncatula]
          Length = 566

 Score =  199 bits (507), Expect = 8e-49
 Identities = 98/196 (50%), Positives = 132/196 (67%), Gaps = 15/196 (7%)
 Frame = +1

Query: 502  DGYVDDNRSTI*FGIRPTIQHYGCMVDLLARVGHLKEAELFIKRMPIEPDSVVWRNLIWA 681
            +GY+  N     + ++P I+H+GCMVDLLA+ G L+EAE FI  MP++PD+V+WR LIWA
Sbjct: 311  EGYMFFNDVQKRYSMKPNIKHFGCMVDLLAKGGCLEEAEDFINAMPMKPDAVIWRTLIWA 370

Query: 682  CKMHGDHYRGDGLMNQNQLLQMDSSDSGSYVLYGNVYASNGNWCEKAKVRE--------- 834
            CK+H D  R + LM   +L  M + DSGSY+L  NVYAS G WC+KA+VRE         
Sbjct: 371  CKVHADTERAERLMKHLELQGMSAHDSGSYILASNVYASTGKWCDKAEVRELMNKKGLVK 430

Query: 835  ------IEVKGIIHKFFAGDTEHRQAEKIYKKPDEIADQLNTVGYQPKISEVMLDIEDEE 996
                  IEV G++H+F  GD +H   EKI+ K D++ D+L   GY PK+SEVML+++DEE
Sbjct: 431  PPGSSRIEVDGVVHEFVMGDYDHPDTEKIFIKLDQMVDKLRKEGYNPKVSEVMLEMDDEE 490

Query: 997  KAFQLHHNSEKLAYCW 1044
            KA QL H+SEKLA  +
Sbjct: 491  KAIQLLHHSEKLALAY 506



 Score =  110 bits (276), Expect = 5e-22
 Identities = 63/133 (47%), Positives = 79/133 (59%), Gaps = 6/133 (4%)
 Frame = +3

Query: 75  NILSLSKLFNFTALSHSGNFSYARKIFDSLPRPNSYFWNTIIRAYAKSTEPE---QALHL 245
           N  + SKLF F A S SG+ +YAR + ++ P  NSY++NTIIRAY+ ++ P    QAL L
Sbjct: 16  NQRNFSKLFTFAAQSPSGDLNYARLLLNTNPSLNSYYYNTIIRAYSHTSNPTHHFQALSL 75

Query: 246 FLSMQHKDH---KPDKFTYPFILKSCGCLSKVDEGKQFHALVYKTGLQSDRYIQNSLIHM 416
           F+ M        KPD FTY F LKSCG L    + KQ H  + K G   D YIQN+LIHM
Sbjct: 76  FIFMLQPHTNVPKPDTFTYSFALKSCGRLKLTQQAKQLHGFINKMGFGFDLYIQNALIHM 135

Query: 417 YCYCGESDCATRV 455
           Y   GE   A +V
Sbjct: 136 YSEIGELVIARQV 148