BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011247
         (1412 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002272207.2| PREDICTED: 5'-3' exoribonuclease 3-like [Vit...   196   2e-47
emb|CAN79939.1| hypothetical protein VITISV_027778 [Vitis vinifera]   194   4e-47
ref|XP_002523870.1| 5'->3' exoribonuclease, putative [Ricinus co...   186   2e-44
dbj|BAK02385.1| predicted protein [Hordeum vulgare subsp. vulgare]    173   1e-40
ref|XP_003606089.1| 5'-3' exoribonuclease [Medicago truncatula] ...   172   1e-40

>ref|XP_002272207.2| PREDICTED: 5'-3' exoribonuclease 3-like [Vitis vinifera]
          Length = 1072

 Score =  196 bits (497), Expect = 2e-47
 Identities = 137/363 (37%), Positives = 190/363 (52%), Gaps = 30/363 (8%)
 Frame = +1

Query: 1    PFKPFDQLMGVLPPRSIYALPKAYWHLVTEEQSNLIDFYPTDFDVDIDGKRFLWQGIVKL 180
            PFKPFDQLMGVLPP S +ALPKAY  L+ +E SN+IDFY T+F+VD DGKRF+WQGI KL
Sbjct: 674  PFKPFDQLMGVLPPSSAHALPKAYQPLMIDEDSNIIDFYNTNFEVDTDGKRFIWQGICKL 733

Query: 181  PFIEEKRLLAETSKLENELEEYEINRNSESREKIFVSSSHD---FASQIVSLYEQNATKK 351
            PFI+E RLLAET KLE ELE+ E  RN+ S +++F+  S     F ++ VS  + N T K
Sbjct: 734  PFIDEARLLAETRKLEKELEDQEAVRNARSFDQLFLRFSDKLRLFYTEQVSCRKPNKTAK 793

Query: 352  --EIFASGDMNGFIAPSSEYSGYDTSSV--KQAESATKNDVLCATYEFPISNTHIPRLLE 519
                F+ G +NG+I   +       S+   K  E+  ++DV+   YE P    HIPR LE
Sbjct: 794  IDSNFSLG-INGYICFDNNGLNMMNSTCLDKNLENIQEDDVISMLYEVPNGCLHIPRPLE 852

Query: 520  NVTIPEKTLTETDNVKRPLWHEYEGHRPPNYNSLQNQERYRKVIN--------GGNVASP 675
                P KT+TE D  +  LWHEY+G +PP     +  E +   IN           +++ 
Sbjct: 853  GTIFPFKTITEADIEETLLWHEYKGSKPP--VKFRGHEGFGPAINRLKSKACGSSTISAA 910

Query: 676  DAMSVKEAGHAWRG--------RGRGNIEAIHSTHNRSHRGIGAANNVSEIGKWGRGRGK 831
              ++V  AG + R         R  GN  +   THN+ +R +G+   +  I        +
Sbjct: 911  SGLNVARAGSSTRSEDHNPLILRCSGNFRS--ETHNQMNRVVGSRAQLQGI--------Q 960

Query: 832  TLESQWNRTPDLRRRIQSLHGSPAASGYGRGNGAANNMRPM---TSYSSSFEIG----KW 990
             L+   NR           HG    + YGR + + NN  P    ++Y+ S        +W
Sbjct: 961  DLKISENR-----------HG---LASYGRDHQSTNNFCPSKHPSTYNKSVAFDHASTRW 1006

Query: 991  GRG 999
             RG
Sbjct: 1007 QRG 1009


>emb|CAN79939.1| hypothetical protein VITISV_027778 [Vitis vinifera]
          Length = 918

 Score =  194 bits (494), Expect = 4e-47
 Identities = 137/363 (37%), Positives = 186/363 (51%), Gaps = 30/363 (8%)
 Frame = +1

Query: 1    PFKPFDQLMGVLPPRSIYALPKAYWHLVTEEQSNLIDFYPTDFDVDIDGKRFLWQGIVKL 180
            PFKPFDQLMGVLPP S +ALPKAY  L+ +E SN+IDFY T+F+VD DGKRF+WQGI KL
Sbjct: 520  PFKPFDQLMGVLPPSSAHALPKAYQPLMIDEDSNIIDFYNTNFEVDTDGKRFIWQGICKL 579

Query: 181  PFIEEKRLLAETSKLENELEEYEINRNSESREKIFVSSS---HDFASQIVSLYEQNATKK 351
            PFI+E RLLAET KLE ELEE E  RN+ S + +F+  S     F  + VS  + N T K
Sbjct: 580  PFIDEARLLAETRKLEKELEEQEAVRNARSFDHLFLRFSDKLRSFYXEQVSCRKPNKTAK 639

Query: 352  --EIFASGDMNGFIAPSSEYSGYDTSSV--KQAESATKNDVLCATYEFPISNTHIPRLLE 519
                F+ G +NG+I   +       S+   K  E+  ++DV+   YE P    HIPR LE
Sbjct: 640  IDSNFSLG-INGYICFDNNGLNMMNSTCLDKNLENIQEDDVISMLYEVPNGCLHIPRPLE 698

Query: 520  NVTIPEKTLTETDNVKRPLWHEYEGHRPPNYNSLQNQERYRKVIN--------GGNVASP 675
                P KT+TE D  +  LWHEY+G +PP     +  E +   IN           +++ 
Sbjct: 699  GTIFPFKTITEADIEETLLWHEYKGSKPP--VKFRGHEGFGPAINRLKSKACGSSTISAA 756

Query: 676  DAMSVKEAGHAWRG--------RGRGNIEAIHSTHNRSHRGIGAANNVSEIGKWGRGRGK 831
              ++V  AG + R         R  GN  +   THN+ +R +G+   +  I        K
Sbjct: 757  GGLNVARAGWSTRREDHNPLILRCSGNFRS--ETHNQMNRVVGSRAQLQGI--------K 806

Query: 832  TLESQWNRTPDLRRRIQSLHGSPAASGYGRGNGAANNMRPM---TSYSSSFEIG----KW 990
             L+   NR                 + YGR + + NN  P    ++Y+ S        +W
Sbjct: 807  DLKISENR--------------QGLASYGRDHQSTNNFCPSKHPSTYNKSVAFDHASTRW 852

Query: 991  GRG 999
             RG
Sbjct: 853  QRG 855


>ref|XP_002523870.1| 5'->3' exoribonuclease, putative [Ricinus communis]
            gi|223536958|gb|EEF38596.1| 5'->3' exoribonuclease,
            putative [Ricinus communis]
          Length = 993

 Score =  186 bits (471), Expect = 2e-44
 Identities = 123/347 (35%), Positives = 171/347 (49%), Gaps = 38/347 (10%)
 Frame = +1

Query: 1    PFKPFDQLMGVLPPRSIYALPKAYWHLVTEEQSNLIDFYPTDFDVDIDGKRFLWQGIVKL 180
            PFKPFDQLMGVLPPRS +ALPK+Y  L+ +E+S++IDFYP +F +DIDGKRF+WQGI KL
Sbjct: 584  PFKPFDQLMGVLPPRSAHALPKSYRQLMIDERSSIIDFYPAEFQIDIDGKRFMWQGICKL 643

Query: 181  PFIEEKRLLAETSKLENELEEYEINRNSESREKIFVSSSHDFASQIVSLYEQNATKKEIF 360
            PFI+E+RLLAET K+E EL   E ++N E+ +K+FV   +   SQ++ L  +       F
Sbjct: 644  PFIDEERLLAETKKMEKELTRKEADKNVENVDKLFVRRENFSESQLLQLVSE-------F 696

Query: 361  ASGDMNGFIAPSSEYSGYDTSSVKQAESATKNDVLCATYEFPISNTHIPRLLENVTIPEK 540
            A+G     +                     KN + C  +E P  +  IPR LE V  PE+
Sbjct: 697  AAGRPKDMV-------------------EIKNSLRCLLFELPKGSQFIPRPLEGVKYPEQ 737

Query: 541  TLTETDNVKRPLWHEYEGHRPP-----------NYNSLQNQERYRKVINGGNVASPDAMS 687
             + + D ++  LWHE  G R P           +Y+       +    N GN +   A +
Sbjct: 738  IIGDDDIMETQLWHECPGSRCPTRLRVQESHIKSYHRRDFAPSFSAERNNGNYSGESASN 797

Query: 688  --VKEAGHAWRGRGRGNIEAI-----------------HSTHNRSHRGIGAANNVSEIGK 810
               +      RGRGRG    +                  S+  + H+G G AN       
Sbjct: 798  WYFEPTHKGGRGRGRGRERGVGSLNYYQLSNYCRKSELSSSSEQIHKGAGPANT-----G 852

Query: 811  WG--RGRGKTLESQWNRTPDLR------RRIQSLHGSPAASGYGRGN 927
            WG  RGRG+    +   T DLR      +R++    S    G GRG+
Sbjct: 853  WGACRGRGR---GRGITTVDLREHIEKIQRVEPFASSSVVGGSGRGH 896


>dbj|BAK02385.1| predicted protein [Hordeum vulgare subsp. vulgare]
          Length = 895

 Score =  173 bits (438), Expect = 1e-40
 Identities = 120/345 (34%), Positives = 175/345 (50%), Gaps = 11/345 (3%)
 Frame = +1

Query: 1    PFKPFDQLMGVLPPRSIY---ALPKAYWHLVTEEQSNLIDFYPTDFDVDIDGKRFLWQGI 171
            P +PFDQLM VLPP       ALPK Y  L+  E+S +  FYP++F++D  GKRFL QG+
Sbjct: 548  PLRPFDQLMAVLPPEVHVLSSALPKCYSTLIGCEESTIQMFYPSEFEIDTYGKRFLSQGV 607

Query: 172  VKLPFIEEKRLLAETSKLENELEEYEINRNSESREKIFVSSSHDFASQ--IVSLYEQNAT 345
             KLPFI+ K LL+ T  +E +L   E+ RN+  +E+IF+ +SH   +    V+L+     
Sbjct: 608  AKLPFIDNKLLLSATKMVEKDLTYDEMRRNNVRQERIFLRNSHSLTNNEAFVALFNGYPQ 667

Query: 346  KKEIFASGDMNGFIAPSSE----YSGYDTSSVKQAESATKNDVLCATYEFPISNTHIPRL 513
            KK +  + ++ G+ +P  E     S  D         +  +  + AT+  P +   I RL
Sbjct: 668  KKLLIDTSEIGGWFSPDEECESLASRIDKEQWFYMLISEPDMTVSATFFNPEAVKPISRL 727

Query: 514  LENVTIPEKTLTETDNVKRPLWHEYE-GHRPPNYNSLQNQERYRKVINGGNVASPDAMSV 690
            L+NV +P+KT+TE D  KRP+WH Y  G RP     L ++ +   +    + A+P     
Sbjct: 728  LDNVMVPDKTVTEADIRKRPMWHTYPGGPRPRTPPVLTHKTKPETLWRASSPATP-REEH 786

Query: 691  KEAGHAWRGRGRGNIEAIHSTHNRSHRGIGAAN-NVSEIGKWGRGRGKTLESQWNRTPDL 867
            K AG  W GRGRG+  A  +T      G  AA     +IG  G GRG      ++     
Sbjct: 787  KLAGEGWLGRGRGSGPAAAATAETRQIGPAAATAETRQIGPSGYGRG------FHCVDMA 840

Query: 868  RRRIQSLHGSPAASGYGRGNGAANNMRPMTSYSSSFEIGKWGRGG 1002
            + R     GS   +G GRG GA          +++  +G W RGG
Sbjct: 841  QSRGSRFDGSDEWAGGGRGGGAVQRQE-----TAARPVGLWARGG 880


>ref|XP_003606089.1| 5'-3' exoribonuclease [Medicago truncatula]
            gi|355507144|gb|AES88286.1| 5'-3' exoribonuclease
            [Medicago truncatula]
          Length = 866

 Score =  172 bits (437), Expect = 1e-40
 Identities = 114/345 (33%), Positives = 165/345 (47%), Gaps = 15/345 (4%)
 Frame = +1

Query: 1    PFKPFDQLMGVLPPRSIYALPKAYWHLVTEEQSNLIDFYPTDFDVDIDGKRFLWQGIVKL 180
            PF PFDQL+ VLP +S YALPKAY  L+ +EQS + D Y  DF++DI+GKRF+WQG+ KL
Sbjct: 553  PFLPFDQLLSVLPQKSAYALPKAYAQLMLDEQSKIFDLYSQDFEIDIEGKRFMWQGVCKL 612

Query: 181  PFIEEKRLLAETSKLENELEEYEINRNSESREKIFVSSSHDFASQIVSLYEQNATKKEIF 360
            P+++EKRLL ET +L+NEL E E  RNS   +++ VS +   A +I SL      K +  
Sbjct: 613  PYMDEKRLLTETRELKNELSESEAKRNSVEVDRLLVSGTTKLAEKICSL---KLNKLDTS 669

Query: 361  ASGDMNGFIAPSSEYSGYDTSSVKQAESATKND-VLCATYEFPISNT-HIPRLLENVTIP 534
             S  + G I+   E            E+    D V C  YE P+  T H+  LL  V +P
Sbjct: 670  ISDGIGGIISLCHEC----------VENNKHEDIVFCVKYEHPVGGTSHVQHLLCGVNLP 719

Query: 535  EKTLTETDNVKRPLWHEYEGHRPPNYNSLQNQERYRKVINGGNVASPDAMSVKEAGHAWR 714
            EKT+ E D  +  LWH+ +  +   +    NQ+ +R     GNV+     S    G ++ 
Sbjct: 720  EKTIFENDINETVLWHD-QSQQYSCFGRANNQDNWRNSNKEGNVSKFHPNSTSFGGRSF- 777

Query: 715  GRGRGNIEAIHSTHNRSHRGIGAANNVSEIGKWGRGRGKTLESQWNRTPDLRRRIQSLHG 894
                    + ++     H+G G          WG GRGK+         +        H 
Sbjct: 778  --------SRNAPPESIHKGAGVG--------WGSGRGKSERIDHETINERMSSFSPFHK 821

Query: 895  SPAASG------------YGRGNG-AANNMRPMTSYSSSFEIGKW 990
             P   G            +GRG G  + N   + ++S S +  +W
Sbjct: 822  QPNDHGGSYHQHQRSHVPFGRGRGRTSQNPNNVYAWSDSKDRSRW 866