BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011184
         (901 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003574931.1| PREDICTED: uncharacterized protein LOC100825...   234   2e-59
sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig ...   232   1e-58
ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group] g...   231   1e-58
gb|AGE44298.1| whirly transcription factor domain containing pro...   228   2e-57
gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays] gi|41392...   226   6e-57

>ref|XP_003574931.1| PREDICTED: uncharacterized protein LOC100825843 [Brachypodium
           distachyon]
          Length = 231

 Score =  234 bits (598), Expect = 2e-59
 Identities = 120/218 (55%), Positives = 157/218 (72%), Gaps = 10/218 (4%)
 Frame = -2

Query: 795 KVSDSMNAIWTRSFTSQ-AVSAGSRTGYVNAD------YSIFKGKAALLTAPKVPTFNQT 637
           KVSD  + +W+ S T + A+S  +     NA       Y++FKGKAAL  +P +P F + 
Sbjct: 14  KVSDLKDVLWSGSVTFEHALSTSAANVDENASARKFASYTVFKGKAALSISPILPNFTKI 73

Query: 636 NN---RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPS 466
            +   R+ K G +MLTF PAVG+R+YDY ++Q+FALSPTEVGSLISL S +SCEFFHDPS
Sbjct: 74  ESGGSRVKKNGSVMLTFFPAVGQRQYDYSKKQLFALSPTEVGSLISLGSAESCEFFHDPS 133

Query: 465 MKSSNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYI 286
           MKSS+ GQV+KSLS++P G D+G+F N++V+NN+QKTNER SVPV+KAEFAV+RTA SY 
Sbjct: 134 MKSSHEGQVKKSLSITPLGNDNGYFVNITVLNNVQKTNERLSVPVTKAEFAVMRTALSYA 193

Query: 285 LPHIMGWDQYTKQVQTSGDLNSIRLLEKRPSPNSEWDR 172
           LPHIMGWDQ       S    + +   +RP P+SEW+R
Sbjct: 194 LPHIMGWDQALTSHPQSPTAPASKPRVERPHPDSEWER 231


>sp|D9J034.1|WHY2_SOLTU RecName: Full=Single-stranded DNA-bindig protein WHY2,
           mitochondrial; AltName: Full=Protein WHIRLY 2;
           Short=StWHY2; Flags: Precursor
           gi|298359665|gb|ADI77438.1| Why2 protein [Solanum
           tuberosum]
          Length = 238

 Score =  232 bits (591), Expect = 1e-58
 Identities = 124/242 (51%), Positives = 169/242 (69%), Gaps = 13/242 (5%)
 Frame = -2

Query: 858 MMKLTQLLRHRSNVTEKVLPGKVSDSMNAIWTRSFTSQA----------VSAGSRTGYVN 709
           M+K+++LL  R+ +  K LPG+      +IW  +  + A            AG R G V 
Sbjct: 1   MLKVSRLLHPRNQLLHKKLPGECVKG--SIWQHAINTFAGFSTVRQNVVADAGKREGRVF 58

Query: 708 ADYSIFKGKAALLTAPKVPTFNQTNN---RIDKKGCIMLTFMPAVGERKYDYERRQVFAL 538
           A YS+FKGKAAL   P++PTFN+ ++   +++++G IMLTF P+VGERKYD+E+RQ+FAL
Sbjct: 59  APYSVFKGKAALSAEPRLPTFNRLDSGGVKLNRRGVIMLTFWPSVGERKYDWEKRQLFAL 118

Query: 537 SPTEVGSLISLESGKSCEFFHDPSMKSSNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQK 358
           S TEVGSLIS+ +  S EFFHDPSM SSNAGQVRKSLS+ P  + SG+F +LSVVNN  K
Sbjct: 119 SATEVGSLISMGTRDSSEFFHDPSMLSSNAGQVRKSLSIKPNADGSGYFISLSVVNNNLK 178

Query: 357 TNERFSVPVSKAEFAVLRTAFSYILPHIMGWDQYTKQVQTSGDLNSIRLLEKRPSPNSEW 178
           TN+RF+VPV+ AEFAV+RTAFS+ LPHIMGWD++T +   S   +  +++ +     +EW
Sbjct: 179 TNDRFTVPVTTAEFAVMRTAFSFALPHIMGWDRFTNRPSESISQSPSKVVPQ--LMEAEW 236

Query: 177 DR 172
           DR
Sbjct: 237 DR 238


>ref|NP_001045956.1| Os02g0158400 [Oryza sativa Japonica Group]
           gi|50251252|dbj|BAD28032.1| putative Chain C, Structure
           Of The Plant Transcriptional Regulator Pbf-2 [Oryza
           sativa Japonica Group] gi|50252182|dbj|BAD28177.1|
           putative Chain C, Structure Of The Plant Transcriptional
           Regulator Pbf-2 [Oryza sativa Japonica Group]
           gi|113535487|dbj|BAF07870.1| Os02g0158400 [Oryza sativa
           Japonica Group] gi|215692593|dbj|BAG88013.1| unnamed
           protein product [Oryza sativa Japonica Group]
           gi|215704516|dbj|BAG94149.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|215740785|dbj|BAG96941.1| unnamed protein product
           [Oryza sativa Japonica Group]
           gi|218190103|gb|EEC72530.1| hypothetical protein
           OsI_05924 [Oryza sativa Indica Group]
           gi|222622212|gb|EEE56344.1| hypothetical protein
           OsJ_05450 [Oryza sativa Japonica Group]
          Length = 228

 Score =  231 bits (590), Expect = 1e-58
 Identities = 120/216 (55%), Positives = 157/216 (72%), Gaps = 8/216 (3%)
 Frame = -2

Query: 795 KVSDSMNAIWTRSFTSQ----AVSAGSRT-GYVNADYSIFKGKAALLTAPKVPTFNQTNN 631
           +V+D  +A+W+ S T Q      +A   T G   A Y++FKGKAAL   P +P+F++  +
Sbjct: 14  RVTDLKDALWSGSLTFQHALSTFAADENTSGRKFASYTVFKGKAALSMQPILPSFSKLES 73

Query: 630 ---RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPSMK 460
              R++K G +MLTF PAVG+RKYDY ++Q+FALSPTEVGSLISL   +SCEFFHDPSMK
Sbjct: 74  GGSRVNKNGSVMLTFFPAVGQRKYDYSKKQLFALSPTEVGSLISLGPAESCEFFHDPSMK 133

Query: 459 SSNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYILP 280
           SS+ GQV+KSLSV+P G DSG+F N++V+NN+QKT ER S+P+SKAEF V+RTA S+ LP
Sbjct: 134 SSHEGQVKKSLSVTPLGNDSGYFLNITVLNNLQKTTERLSLPISKAEFTVMRTALSFALP 193

Query: 279 HIMGWDQYTKQVQTSGDLNSIRLLEKRPSPNSEWDR 172
           HI+GWDQ     Q S    S   +E RP P+SEW+R
Sbjct: 194 HILGWDQALTNHQPSPSPASKPRVE-RPHPDSEWER 228


>gb|AGE44298.1| whirly transcription factor domain containing protein [Musa AB
           Group]
          Length = 245

 Score =  228 bits (580), Expect = 2e-57
 Identities = 118/214 (55%), Positives = 155/214 (72%), Gaps = 4/214 (1%)
 Frame = -2

Query: 801 PGKVSDSMNAIWTRSFTSQAVSAGSRTGYVNADYSIFKGKAALLTAPKVPTFNQTNN--- 631
           PG V+D  +++  R   S   S+  R  YV  +Y++FKGKAAL  +P +PTF + ++   
Sbjct: 37  PGLVNDGSSSV--RPPFSPTGSSSVRR-YV--EYTVFKGKAALSVSPILPTFREVDSGVS 91

Query: 630 RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPSMKSSN 451
           R+ KKGC++LTF PA+G+RKYD++++Q FALSPTEVGSLI L   +SCEFFHDPSMKSS 
Sbjct: 92  RVHKKGCVILTFWPAIGQRKYDWQKKQAFALSPTEVGSLIGLGPAESCEFFHDPSMKSSL 151

Query: 450 AGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYILPHIM 271
            GQV+KSLS+SP  + +G+  NLSVVNNIQKTNERFS+PVSKAEF  +RT FSY+LPHIM
Sbjct: 152 EGQVKKSLSISPLNDKAGYLLNLSVVNNIQKTNERFSLPVSKAEFTAIRTVFSYVLPHIM 211

Query: 270 GWDQ-YTKQVQTSGDLNSIRLLEKRPSPNSEWDR 172
           GW Q  + Q  ++        +E+RP P+ EW R
Sbjct: 212 GWSQAASPQPPSTATHTPKEQIEERPDPSLEWGR 245


>gb|AFW66475.1| DNA binding protein isoform 1 [Zea mays]
           gi|413926544|gb|AFW66476.1| DNA binding protein isoform
           2 [Zea mays]
          Length = 274

 Score =  226 bits (576), Expect = 6e-57
 Identities = 117/216 (54%), Positives = 153/216 (70%), Gaps = 11/216 (5%)
 Frame = -2

Query: 786 DSMNAIWTRSFT-SQAVSA------GSRTGYVNADYSIFKGKAALLTAPKVPTFNQTNN- 631
           D   ++W+ S T  QAVS       G+ +G   A Y++FKGKAAL   P +P+F++  + 
Sbjct: 59  DLKESLWSGSLTFQQAVSTAATNLDGNLSGKKFASYTVFKGKAALSIHPILPSFSKLESG 118

Query: 630 --RIDKKGCIMLTFMPAVGERKYDYERRQVFALSPTEVGSLISLESGKSCEFFHDPSMKS 457
             R+ K G +MLTF PAVG+RKYDY ++Q+FALSPTEVGSLISL   +SCEFFHDPSMKS
Sbjct: 119 GSRVSKNGSVMLTFFPAVGQRKYDYTKKQLFALSPTEVGSLISLGPAESCEFFHDPSMKS 178

Query: 456 SNAGQVRKSLSVSPYGEDSGFFFNLSVVNNIQKTNERFSVPVSKAEFAVLRTAFSYILPH 277
           SN G V+KSLS++P G DSG+F N++VVN+ ++TN+R SVP++KAEFAV+RT  S+ LPH
Sbjct: 179 SNEGTVKKSLSITPLGSDSGYFVNITVVNSAERTNDRLSVPITKAEFAVIRTTLSFALPH 238

Query: 276 IMGWDQ-YTKQVQTSGDLNSIRLLEKRPSPNSEWDR 172
           IMGWDQ  T          S R   +RP P+SEW+R
Sbjct: 239 IMGWDQALTNHHPAPAPPASSRPTVERPHPDSEWER 274