BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011136
         (243 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]   110   1e-22
ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transc...   110   2e-22
ref|XP_004161719.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA...   101   7e-20
ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transc...   101   7e-20
ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transc...   100   2e-19

>emb|CAN79528.1| hypothetical protein VITISV_026261 [Vitis vinifera]
          Length = 735

 Score =  110 bits (275), Expect = 1e-22
 Identities = 52/80 (65%), Positives = 64/80 (80%)
 Frame = -2

Query: 242 LQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGSLKNLIS 63
           LQ  R+L FA LCIKDPR+YFDSQQANA++TL +T  G+  I C LS+QEAYGSL+  IS
Sbjct: 436 LQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSSQEAYGSLRGFIS 495

Query: 62  EMKRTGFSDPVVRPDVALKV 3
           E+K  G SDP+V+PD+ALKV
Sbjct: 496 EIKSVGLSDPIVKPDIALKV 515


>ref|XP_002276057.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1 [Vitis vinifera]
           gi|296090002|emb|CBI39821.3| unnamed protein product
           [Vitis vinifera]
          Length = 602

 Score =  110 bits (274), Expect = 2e-22
 Identities = 52/80 (65%), Positives = 63/80 (78%)
 Frame = -2

Query: 242 LQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGSLKNLIS 63
           LQ  R+L FA LCIKDPR+YFDSQQANA++TL +T  G+  I C LS QEAYGSL+  IS
Sbjct: 393 LQAPRDLPFAALCIKDPRDYFDSQQANALKTLGDTLAGSKQIKCSLSTQEAYGSLRGFIS 452

Query: 62  EMKRTGFSDPVVRPDVALKV 3
           E+K  G SDP+V+PD+ALKV
Sbjct: 453 EIKSVGLSDPIVKPDIALKV 472


>ref|XP_004161719.1| PREDICTED: LOW QUALITY PROTEIN: probable RNA polymerase II
           transcription factor B subunit 1-1-like [Cucumis
           sativus]
          Length = 553

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/80 (58%), Positives = 60/80 (75%)
 Frame = -2

Query: 242 LQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGSLKNLIS 63
           LQ   +  FAPLCIKDPR+YFD+QQANAI+TLD+T  G     C LS  EAYGSL+  IS
Sbjct: 226 LQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESIS 285

Query: 62  EMKRTGFSDPVVRPDVALKV 3
           E+K +GF+ P+++P+VAL V
Sbjct: 286 EIKSSGFNHPIIKPEVALMV 305


>ref|XP_004142720.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Cucumis sativus]
          Length = 729

 Score =  101 bits (251), Expect = 7e-20
 Identities = 47/80 (58%), Positives = 60/80 (75%)
 Frame = -2

Query: 242 LQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGSLKNLIS 63
           LQ   +  FAPLCIKDPR+YFD+QQANAI+TLD+T  G     C LS  EAYGSL+  IS
Sbjct: 520 LQAPHSHPFAPLCIKDPRDYFDAQQANAIKTLDDTRAGMQQTKCSLSTTEAYGSLRESIS 579

Query: 62  EMKRTGFSDPVVRPDVALKV 3
           E+K +GF+ P+++P+VAL V
Sbjct: 580 EIKSSGFNHPIIKPEVALMV 599


>ref|XP_003556327.1| PREDICTED: probable RNA polymerase II transcription factor B
           subunit 1-1-like [Glycine max]
          Length = 587

 Score = 99.8 bits (247), Expect = 2e-19
 Identities = 46/80 (57%), Positives = 60/80 (75%)
 Frame = -2

Query: 242 LQDHRNLKFAPLCIKDPREYFDSQQANAIRTLDETEIGTNPINCGLSAQEAYGSLKNLIS 63
           LQ   N  +APLCIKDPR+YFD QQANA++TLD+++ G   + C L ++EAYGSL+  IS
Sbjct: 379 LQAQDNHPYAPLCIKDPRDYFDFQQANAVKTLDDSQTGMEQMKCSLGSEEAYGSLRASIS 438

Query: 62  EMKRTGFSDPVVRPDVALKV 3
           ++K TG  DP+  PDVALKV
Sbjct: 439 KIKTTGLRDPLFSPDVALKV 458