BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011129
         (1447 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002281874.1| PREDICTED: DNA repair protein RAD51 homolog ...   484   e-134
emb|CBI16239.3| unnamed protein product [Vitis vinifera]              478   e-132
ref|XP_004149537.1| PREDICTED: DNA repair protein RAD51 homolog ...   476   e-132
ref|XP_004170620.1| PREDICTED: DNA repair protein RAD51 homolog ...   464   e-128
ref|NP_001031438.1| DNA repair protein RAD51-like 2 [Arabidopsis...   458   e-126

>ref|XP_002281874.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Vitis vinifera]
          Length = 439

 Score =  484 bits (1247), Expect = e-134
 Identities = 249/368 (67%), Positives = 305/368 (82%), Gaps = 5/368 (1%)
 Frame = +3

Query: 153  MANKLITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVT 332
            MANKLI+EMGLP  I+N+FAARNI TAK+ALSLTEFELMELLDV ++++TSA++ I+E+ 
Sbjct: 1    MANKLISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIV 60

Query: 333  CPPYQTAQSLMEERVGSE----HLATGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCL 500
             PP QTA SLME+RV +E    HL T L GLD+ L GGIPFGVLTELVGP GIGKTQFCL
Sbjct: 61   SPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCL 120

Query: 501  KLALLAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILV 680
            KL+LLA+LP SYGGL GRVIYID E+KFSS+RMIEIG KSFPEIFH++GMA+EMAGRILV
Sbjct: 121  KLSLLASLPASYGGLDGRVIYIDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEMAGRILV 180

Query: 681  LRPASLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFLKS 860
            LRP SLSEFTESLQ I++S+LQ+ VKLL++DS+A+LV+GEY++   +Q+SLGWHISF+KS
Sbjct: 181  LRPTSLSEFTESLQHIKISLLQNHVKLLVIDSMAALVTGEYDQGPTRQHSLGWHISFVKS 240

Query: 861  LAEFSRIPIVVTNQVRSQS-SGDAVYSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVT 1037
            +AEFSRIPIVVTNQVRSQS  G + YSFQV++R E V D    + HLVAALGIHWAHAVT
Sbjct: 241  VAEFSRIPIVVTNQVRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVT 300

Query: 1038 IRLVLEASSGQRYIKVAKXXXXXXXXXXXXVTSSGISLLSDDGTEVEGAEINAIHCQGYS 1217
            IRLVLEA +GQR++KVAK            +T SGISLL+D+G E++G +I+ IH QG+ 
Sbjct: 301  IRLVLEAKAGQRFLKVAKSPISPPLAFPFNITPSGISLLNDEGIEMKGPQISTIHYQGHE 360

Query: 1218 DVVDLNRE 1241
            D+++ + E
Sbjct: 361  DIINFDSE 368


>emb|CBI16239.3| unnamed protein product [Vitis vinifera]
          Length = 371

 Score =  478 bits (1231), Expect = e-132
 Identities = 247/370 (66%), Positives = 303/370 (81%), Gaps = 5/370 (1%)
 Frame = +3

Query: 153  MANKLITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVT 332
            MANKLI+EMGLP  I+N+FAARNI TAK+ALSLTEFELMELLDV ++++TSA++ I+E+ 
Sbjct: 1    MANKLISEMGLPTSIANIFAARNITTAKEALSLTEFELMELLDVGMARVTSAVAHISEIV 60

Query: 333  CPPYQTAQSLMEERVGSE----HLATGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCL 500
             PP QTA SLME+RV +E    HL T L GLD+ L GGIPFGVLTELVGP GIGKTQFCL
Sbjct: 61   SPPTQTALSLMEQRVQNEYMAGHLPTRLKGLDEALGGGIPFGVLTELVGPPGIGKTQFCL 120

Query: 501  KLALLAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILV 680
            KL+LLA+LP SYGGL GRVIYID E+KFSS+RMIEIG KSFPEIFH++GMA+E    ILV
Sbjct: 121  KLSLLASLPASYGGLDGRVIYIDAESKFSSRRMIEIGSKSFPEIFHVEGMAKEACPLILV 180

Query: 681  LRPASLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFLKS 860
            LRP SLSEFTESLQ I++S+LQ+ VKLL++DS+A+LV+GEY++   +Q+SLGWHISF+KS
Sbjct: 181  LRPTSLSEFTESLQHIKISLLQNHVKLLVIDSMAALVTGEYDQGPTRQHSLGWHISFVKS 240

Query: 861  LAEFSRIPIVVTNQVRSQS-SGDAVYSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVT 1037
            +AEFSRIPIVVTNQVRSQS  G + YSFQV++R E V D    + HLVAALGIHWAHAVT
Sbjct: 241  VAEFSRIPIVVTNQVRSQSHDGTSQYSFQVESRGETVDDHTRFDSHLVAALGIHWAHAVT 300

Query: 1038 IRLVLEASSGQRYIKVAKXXXXXXXXXXXXVTSSGISLLSDDGTEVEGAEINAIHCQGYS 1217
            IRLVLEA +GQR++KVAK            +T SGISLL+D+G E++G +I+ IH QG+ 
Sbjct: 301  IRLVLEAKAGQRFLKVAKSPISPPLAFPFNITPSGISLLNDEGIEMKGPQISTIHYQGHE 360

Query: 1218 DVVDLNRERL 1247
            D+++ + ERL
Sbjct: 361  DIINFDSERL 370


>ref|XP_004149537.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis sativus]
          Length = 371

 Score =  476 bits (1226), Expect = e-132
 Identities = 243/363 (66%), Positives = 304/363 (83%), Gaps = 5/363 (1%)
 Frame = +3

Query: 153  MANKLITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVT 332
            MAN+LI +MGLP+ I+N+FAARNI TAK+ALSLTEFELMELLDV LS++ SA++ I+E+ 
Sbjct: 1    MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 333  CPPYQTAQSLMEERVGSEHLA----TGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCL 500
             PPYQTA SLME+R+ +EHLA    T L GLD+ L GGIPFGVLTELVGPAGIGKTQFCL
Sbjct: 61   SPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPAGIGKTQFCL 120

Query: 501  KLALLAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILV 680
            KL+ LAALP SYGGL GRVIYID E+KFSSKRMIEIG++SFP++F+   MA+EMAGRILV
Sbjct: 121  KLSFLAALPPSYGGLDGRVIYIDVESKFSSKRMIEIGMRSFPDVFNKKDMAQEMAGRILV 180

Query: 681  LRPASLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFLKS 860
            LRPASLSEFTESL +I++S+L+ +VKL+I+DS+A+L++GEYE  APKQ+SLGWHISF+KS
Sbjct: 181  LRPASLSEFTESLHKIKVSLLEQEVKLVIIDSMAALITGEYELGAPKQHSLGWHISFIKS 240

Query: 861  LAEFSRIPIVVTNQVRSQSSGD-AVYSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVT 1037
            +AEF+RIP+VVTNQVRS++  + + YSFQ  +R E  + + G   H+VAALG+HWAH+VT
Sbjct: 241  IAEFARIPVVVTNQVRSRNRKEVSHYSFQGWSRSECQEYSSGYGSHIVAALGVHWAHSVT 300

Query: 1038 IRLVLEASSGQRYIKVAKXXXXXXXXXXXXVTSSGISLLSDDGTEVEGAEINAIHCQGYS 1217
            IRLVLEA SGQR+IK+AK            +T+SGISLLS++G E+ GAEIN IHCQG+S
Sbjct: 301  IRLVLEAKSGQRFIKLAKSPMSPPLAFPFTITASGISLLSNNGEELSGAEINEIHCQGHS 360

Query: 1218 DVV 1226
            D++
Sbjct: 361  DII 363


>ref|XP_004170620.1| PREDICTED: DNA repair protein RAD51 homolog 2-like [Cucumis sativus]
          Length = 379

 Score =  464 bits (1195), Expect = e-128
 Identities = 239/371 (64%), Positives = 303/371 (81%), Gaps = 13/371 (3%)
 Frame = +3

Query: 153  MANKLITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVT 332
            MAN+LI +MGLP+ I+N+FAARNI TAK+ALSLTEFELMELLDV LS++ SA++ I+E+ 
Sbjct: 1    MANRLINQMGLPRSIANIFAARNINTAKEALSLTEFELMELLDVGLSEVASAVAHISEIA 60

Query: 333  CPPYQTAQSLMEERVGSEHLA----TGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCL 500
             PPYQTA SLME+R+ +EHLA    T L GLD+ L GGIPFGVLTELVGPAGIGKTQFCL
Sbjct: 61   SPPYQTALSLMEQRLQNEHLAGHLSTCLKGLDEALFGGIPFGVLTELVGPAGIGKTQFCL 120

Query: 501  KLALLAALPVSYGGLSGRVIYIDTEAKFSSKR--------MIEIGIKSFPEIFHLDGMAE 656
            KL+ LAALP SYGGL GRVIYID E+KFSSKR        +++ G++SFP++F+   MA+
Sbjct: 121  KLSFLAALPPSYGGLDGRVIYIDVESKFSSKRYFKYSIDVLVKFGMRSFPDVFNKKDMAQ 180

Query: 657  EMAGRILVLRPASLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLG 836
            EMAGRILVLRPASLSEFTESL +I++S+L+ +VKL+I+DS+A+L++GEYE  APKQ+SLG
Sbjct: 181  EMAGRILVLRPASLSEFTESLHKIKVSLLEQEVKLVIIDSMAALITGEYELGAPKQHSLG 240

Query: 837  WHISFLKSLAEFSRIPIVVTNQVRSQSSGD-AVYSFQVQNRHENVKDTGGLELHLVAALG 1013
            WHISF+KS+AEF+RIP+VVTNQVRS++  + + YSFQ  +R E  + + G   H+VAALG
Sbjct: 241  WHISFIKSIAEFARIPVVVTNQVRSRNRKEVSHYSFQGWSRSECQEYSSGYGSHIVAALG 300

Query: 1014 IHWAHAVTIRLVLEASSGQRYIKVAKXXXXXXXXXXXXVTSSGISLLSDDGTEVEGAEIN 1193
            +HWAH+VTIRLVLEA SGQR+IK+AK            +T+SGISLLS++G E+ GAEIN
Sbjct: 301  VHWAHSVTIRLVLEAKSGQRFIKLAKSPMSPPLAFPFTITASGISLLSNNGEELSGAEIN 360

Query: 1194 AIHCQGYSDVV 1226
             IHCQG+SD++
Sbjct: 361  EIHCQGHSDII 371


>ref|NP_001031438.1| DNA repair protein RAD51-like 2 [Arabidopsis thaliana]
            gi|83305358|sp|Q9SK02.2|RA51B_ARATH RecName: Full=DNA
            repair protein RAD51 homolog 2; Short=AtRAD51B
            gi|58430738|dbj|BAD89163.1| AtRAD51Balpha [Arabidopsis
            thaliana] gi|330253047|gb|AEC08141.1| DNA repair protein
            RAD51-like 2 [Arabidopsis thaliana]
          Length = 370

 Score =  458 bits (1179), Expect = e-126
 Identities = 239/366 (65%), Positives = 297/366 (81%), Gaps = 5/366 (1%)
 Frame = +3

Query: 153  MANKLITEMGLPKPISNLFAARNILTAKDALSLTEFELMELLDVELSQITSAISRITEVT 332
            MANKLI EMGL   ISN+FAARNI+TAKDALS+TEFELMELLDV + +I SAIS I+E T
Sbjct: 1    MANKLIGEMGLHTKISNIFAARNIITAKDALSMTEFELMELLDVGMKEIRSAISFISEAT 60

Query: 333  CPPYQTAQSLMEERVGSEHLA----TGLSGLDKCLCGGIPFGVLTELVGPAGIGKTQFCL 500
             PP Q+A+SL+E++V +EHL+    T L GLD  LCGGIPFGVLTELVGP GIGK+QFC+
Sbjct: 61   SPPCQSARSLLEKKVENEHLSGHLPTHLKGLDDTLCGGIPFGVLTELVGPPGIGKSQFCM 120

Query: 501  KLALLAALPVSYGGLSGRVIYIDTEAKFSSKRMIEIGIKSFPEIFHLDGMAEEMAGRILV 680
            KLAL A+ PV+YGGL GRVIYID E+KFSS+R+IE+G++SFPE+FHL GMA+EMAGRILV
Sbjct: 121  KLALSASFPVAYGGLDGRVIYIDVESKFSSRRVIEMGLESFPEVFHLKGMAQEMAGRILV 180

Query: 681  LRPASLSEFTESLQQIQLSVLQHQVKLLIVDSVASLVSGEYEKDAPKQNSLGWHISFLKS 860
            LRP SL+ FTES+Q+++ S+LQ+QVKLL++DS+ +L+SGE +  A +Q  LGWHISFLKS
Sbjct: 181  LRPTSLANFTESIQELKNSILQNQVKLLVIDSMTALLSGENKPGAQRQPQLGWHISFLKS 240

Query: 861  LAEFSRIPIVVTNQVRSQSSGD-AVYSFQVQNRHENVKDTGGLELHLVAALGIHWAHAVT 1037
            LAEFSRIPIVVTNQVRSQ+  + + YSFQ + + E   +T   + HLVAALGI+WAHAVT
Sbjct: 241  LAEFSRIPIVVTNQVRSQNRDETSQYSFQAKVKDEFKDNTKTYDSHLVAALGINWAHAVT 300

Query: 1038 IRLVLEASSGQRYIKVAKXXXXXXXXXXXXVTSSGISLLSDDGTEVEGAEINAIHCQGYS 1217
            IRLVLEA SGQR IKVAK            +TS+GISLLSD+GTE++G  IN IH +G+S
Sbjct: 301  IRLVLEAKSGQRIIKVAKSPMSPPLAFPFHITSAGISLLSDNGTELKGPGINTIHARGHS 360

Query: 1218 DVVDLN 1235
            D+++ +
Sbjct: 361  DMINFH 366