BLASTX nr result
ID: Coptis25_contig00011050
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00011050
(748 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002267297.1| PREDICTED: arginine/serine-rich-splicing fac... 171 7e-72
emb|CBI40588.3| unnamed protein product [Vitis vinifera] 171 7e-72
ref|XP_004133800.1| PREDICTED: arginine/serine-rich-splicing fac... 146 1e-64
ref|XP_002523299.1| arginine/serine-rich splicing factor, putati... 141 5e-62
ref|XP_002302651.1| predicted protein [Populus trichocarpa] gi|2... 132 4e-58
>ref|XP_002267297.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Vitis
vinifera]
Length = 241
Score = 171 bits (432), Expect(2) = 7e-72
Identities = 81/108 (75%), Positives = 93/108 (86%)
Frame = +2
Query: 266 FAFVQFETQEEATKALEYTHMSKILDRMVSVEYALKDDSERDNSPPRRGYGRRDDSPYGR 445
FAFVQ+ETQE+ATKALE THMSKILDR+VSVEYAL+DDS++ +SP R GY RR +SPYGR
Sbjct: 129 FAFVQYETQEDATKALECTHMSKILDRVVSVEYALRDDSDKYDSPRRGGYSRRGESPYGR 188
Query: 446 SRSPVYRRNRPSPDYGRARSPIYDRYGGSSYNRERSPVYERYRSRSPI 589
S SPV RR RPSPDYGRA+SP+YDRY G +Y R RSP Y RYRSRSP+
Sbjct: 189 SPSPVNRRGRPSPDYGRAQSPVYDRYNGPAYERNRSPEYGRYRSRSPV 236
Score = 126 bits (317), Expect(2) = 7e-72
Identities = 59/69 (85%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LSVEWARGERGARHRDGARPMTNQRPTKTLFVINFDPIRTKVHDIERHFEPYGKVLHVRI 180
LSVEWA+GERG RHR+G+R M NQRPTKTLFVINFDPIRT++ DIERHFEPYGKVLHVRI
Sbjct: 67 LSVEWAKGERG-RHREGSRSMANQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRI 125
Query: 181 RRNFAFVQF 207
RRNFAFVQ+
Sbjct: 126 RRNFAFVQY 134
>emb|CBI40588.3| unnamed protein product [Vitis vinifera]
Length = 224
Score = 171 bits (432), Expect(2) = 7e-72
Identities = 81/108 (75%), Positives = 93/108 (86%)
Frame = +2
Query: 266 FAFVQFETQEEATKALEYTHMSKILDRMVSVEYALKDDSERDNSPPRRGYGRRDDSPYGR 445
FAFVQ+ETQE+ATKALE THMSKILDR+VSVEYAL+DDS++ +SP R GY RR +SPYGR
Sbjct: 112 FAFVQYETQEDATKALECTHMSKILDRVVSVEYALRDDSDKYDSPRRGGYSRRGESPYGR 171
Query: 446 SRSPVYRRNRPSPDYGRARSPIYDRYGGSSYNRERSPVYERYRSRSPI 589
S SPV RR RPSPDYGRA+SP+YDRY G +Y R RSP Y RYRSRSP+
Sbjct: 172 SPSPVNRRGRPSPDYGRAQSPVYDRYNGPAYERNRSPEYGRYRSRSPV 219
Score = 126 bits (317), Expect(2) = 7e-72
Identities = 59/69 (85%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LSVEWARGERGARHRDGARPMTNQRPTKTLFVINFDPIRTKVHDIERHFEPYGKVLHVRI 180
LSVEWA+GERG RHR+G+R M NQRPTKTLFVINFDPIRT++ DIERHFEPYGKVLHVRI
Sbjct: 50 LSVEWAKGERG-RHREGSRSMANQRPTKTLFVINFDPIRTRIRDIERHFEPYGKVLHVRI 108
Query: 181 RRNFAFVQF 207
RRNFAFVQ+
Sbjct: 109 RRNFAFVQY 117
>ref|XP_004133800.1| PREDICTED: arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus] gi|449477961|ref|XP_004155176.1| PREDICTED:
arginine/serine-rich-splicing factor RSP31-like [Cucumis
sativus]
Length = 253
Score = 146 bits (368), Expect(2) = 1e-64
Identities = 84/121 (69%), Positives = 89/121 (73%), Gaps = 13/121 (10%)
Frame = +2
Query: 266 FAFVQFETQEEATKALEYTHMSKILDRMVSVEYALKDDSER----DNSPPRR-GYGRRDD 430
FAFVQFETQE+ATKALE THMSKILDR+VSVEYAL+DD ER D SP R GYGR D
Sbjct: 129 FAFVQFETQEDATKALECTHMSKILDRVVSVEYALRDDGERGDPFDESPRRAGGYGRPGD 188
Query: 431 SPYGRSRSPVYRRNRPSPDYGRARSPIYDRYGG-------SSYNRERSPVY-ERYRSRSP 586
SPY RS SPV+RR RPSPDYGRA SP YDRY G Y R RSP Y R+RSRSP
Sbjct: 189 SPYRRSPSPVFRR-RPSPDYGRAHSPAYDRYNGPYERRRSPDYGRNRSPEYGGRFRSRSP 247
Query: 587 I 589
I
Sbjct: 248 I 248
Score = 127 bits (318), Expect(2) = 1e-64
Identities = 61/69 (88%), Positives = 65/69 (94%)
Frame = +1
Query: 1 LSVEWARGERGARHRDGARPMTNQRPTKTLFVINFDPIRTKVHDIERHFEPYGKVLHVRI 180
LSVEWARGERG RHRDG++ M NQRPTKTLFVINFDPIRT+V DIERHFEPYGKVL+VRI
Sbjct: 67 LSVEWARGERG-RHRDGSKSMANQRPTKTLFVINFDPIRTRVRDIERHFEPYGKVLNVRI 125
Query: 181 RRNFAFVQF 207
RRNFAFVQF
Sbjct: 126 RRNFAFVQF 134
>ref|XP_002523299.1| arginine/serine-rich splicing factor, putative [Ricinus communis]
gi|223537387|gb|EEF39015.1| arginine/serine-rich
splicing factor, putative [Ricinus communis]
Length = 259
Score = 141 bits (356), Expect(3) = 5e-62
Identities = 76/106 (71%), Positives = 85/106 (80%), Gaps = 2/106 (1%)
Frame = +2
Query: 266 FAFVQFETQEEATKALEYTHMSKILDRMVSVEYALKDDSER--DNSPPRRGYGRRDDSPY 439
FAFVQFETQE+ATKALE THM+KILDR+VSVEYAL+DDSER + PRRG S Y
Sbjct: 130 FAFVQFETQEDATKALECTHMTKILDRVVSVEYALRDDSERGDKSDSPRRG------SHY 183
Query: 440 GRSRSPVYRRNRPSPDYGRARSPIYDRYGGSSYNRERSPVYERYRS 577
GRS SPVYRR RPSPDYGRARSP+YD+Y G SY+R RSP Y R +S
Sbjct: 184 GRSPSPVYRR-RPSPDYGRARSPVYDKYNGPSYDRRRSPEYGRDQS 228
Score = 122 bits (306), Expect(3) = 5e-62
Identities = 59/69 (85%), Positives = 63/69 (91%)
Frame = +1
Query: 1 LSVEWARGERGARHRDGARPMTNQRPTKTLFVINFDPIRTKVHDIERHFEPYGKVLHVRI 180
LSVEWARGERG RHRDG+R M NQRPTKTLFVINFDPI T+V DI+RHFE YG+VLHVRI
Sbjct: 68 LSVEWARGERG-RHRDGSRSMANQRPTKTLFVINFDPIHTRVEDIKRHFERYGEVLHVRI 126
Query: 181 RRNFAFVQF 207
RRNFAFVQF
Sbjct: 127 RRNFAFVQF 135
Score = 21.6 bits (44), Expect(3) = 5e-62
Identities = 8/10 (80%), Positives = 8/10 (80%)
Frame = +3
Query: 582 HQFEDR*HEE 611
HQFED HEE
Sbjct: 246 HQFEDHEHEE 255
>ref|XP_002302651.1| predicted protein [Populus trichocarpa] gi|222844377|gb|EEE81924.1|
predicted protein [Populus trichocarpa]
Length = 236
Score = 132 bits (331), Expect(2) = 4e-58
Identities = 73/106 (68%), Positives = 82/106 (77%), Gaps = 2/106 (1%)
Frame = +2
Query: 266 FAFVQFETQEEATKALEYTHMSKILDRMVSVEYALKDDSERDN--SPPRRGYGRRDDSPY 439
FAFVQFETQE+ATKALE THM+KILDR+VSVEYAL+DDSER + PRRG S
Sbjct: 130 FAFVQFETQEDATKALECTHMTKILDRVVSVEYALRDDSERGDRYDSPRRG------SYN 183
Query: 440 GRSRSPVYRRNRPSPDYGRARSPIYDRYGGSSYNRERSPVYERYRS 577
GRS SPVYRR RPSPDY RARSP+YD+Y G Y+R +SP Y R RS
Sbjct: 184 GRSPSPVYRR-RPSPDYVRARSPVYDKYNGPVYDRRQSPDYGRNRS 228
Score = 119 bits (298), Expect(2) = 4e-58
Identities = 58/69 (84%), Positives = 61/69 (88%)
Frame = +1
Query: 1 LSVEWARGERGARHRDGARPMTNQRPTKTLFVINFDPIRTKVHDIERHFEPYGKVLHVRI 180
LSVEWARGERG RHRDG R NQRPTKTLFVINFDPI T+V DI+RHFE YG+VLHVRI
Sbjct: 68 LSVEWARGERG-RHRDGPRSTANQRPTKTLFVINFDPIHTRVEDIKRHFERYGEVLHVRI 126
Query: 181 RRNFAFVQF 207
RRNFAFVQF
Sbjct: 127 RRNFAFVQF 135