BLASTX nr result
ID: Coptis25_contig00011039
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00011039
(1784 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI33123.3| unnamed protein product [Vitis vinifera] 648 0.0
ref|XP_002262798.2| PREDICTED: transcription initiation factor I... 639 0.0
ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|... 591 e-166
ref|XP_002308775.1| predicted protein [Populus trichocarpa] gi|2... 583 e-164
ref|XP_002322538.1| predicted protein [Populus trichocarpa] gi|2... 573 e-161
>emb|CBI33123.3| unnamed protein product [Vitis vinifera]
Length = 539
Score = 648 bits (1671), Expect = 0.0
Identities = 345/543 (63%), Positives = 376/543 (69%), Gaps = 5/543 (0%)
Frame = +2
Query: 65 MSFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 244
MSFDL LKP C GCGS DLYGSNCKH+TLC++CGK MAEN KCYDCG PVTRLIREYN
Sbjct: 1 MSFDLMLKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYN 60
Query: 245 VRTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 418
VRTN+S +KNYFIGRFV+GLP FSKKKNA+ KW + KEGLQGR V+DALREKYKNKPWLL
Sbjct: 61 VRTNSSGDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLL 120
Query: 419 EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK 598
EDETGQ+QYHGQLEGSQSATYYLL+MQ GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK
Sbjct: 121 EDETGQYQYHGQLEGSQSATYYLLMMQ-GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEK 179
Query: 599 MKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGAT--GRGNKKATADDDEGNAS 772
MKNRR+TADGYQRWMMKAANNGPAAFGE EK D+K+TGGA GRG KK T D++EGN S
Sbjct: 180 MKNRRRTADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVS 239
Query: 773 XXXXXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDE 952
KNRLGLNK WEHEEIFTDDDE
Sbjct: 240 DKAEEDEEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDE 299
Query: 953 AVGNDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNXX 1132
AVGNDPEEREDLAPEVPAPPEIKQ +
Sbjct: 300 AVGNDPEEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMND-- 357
Query: 1133 XXXXXXXXXXXXXXIGMSPVLAPKQKDTPKEEPIDNSPSKTVAGSVXXXXXXXXXXXXXX 1312
IG+SPVLAPKQKD PKEEP DNSP K+ S
Sbjct: 358 SDAEDDDDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATASARSTPPTSKSSKGKR 417
Query: 1313 XXXXDDTKSVNGASAKKAKTENDSKSSTKDGSASAPRGGTVAQKGS-ASSIKTESESPVG 1489
DD K+ NG KK KTEN+SKSS KD S P T KG+ +SS+KT S S G
Sbjct: 418 KSNGDDMKTTNGGPPKKVKTENESKSSAKDEGPS-PSKVTATPKGTPSSSVKTGSTSSAG 476
Query: 1490 PVTEDEIRAVLLQKSPVTTQDLVAKFKSRLKGSRDKAAFADILKKISKIQKVNGSSFVVL 1669
PVTEDEIRAVLLQK+PVTTQDLVAKFK+RLK DK AFADIL++ISKIQK NG ++VVL
Sbjct: 477 PVTEDEIRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVL 536
Query: 1670 REK 1678
R+K
Sbjct: 537 RDK 539
>ref|XP_002262798.2| PREDICTED: transcription initiation factor IIF subunit alpha-like
[Vitis vinifera]
Length = 534
Score = 639 bits (1648), Expect = 0.0
Identities = 340/537 (63%), Positives = 371/537 (69%), Gaps = 5/537 (0%)
Frame = +2
Query: 83 LKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYNVRTNAS 262
LKP C GCGS DLYGSNCKH+TLC++CGK MAEN KCYDCG PVTRLIREYNVRTN+S
Sbjct: 2 LKPSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHGKCYDCGTPVTRLIREYNVRTNSS 61
Query: 263 TEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLLEDETGQ 436
+KNYFIGRFV+GLP FSKKKNA+ KW + KEGLQGR V+DALREKYKNKPWLLEDETGQ
Sbjct: 62 GDKNYFIGRFVTGLPGFSKKKNADNKWSLHKEGLQGRQVSDALREKYKNKPWLLEDETGQ 121
Query: 437 FQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRK 616
+QYHGQLEGSQSATYYLL+MQ GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRR+
Sbjct: 122 YQYHGQLEGSQSATYYLLMMQ-GKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKMKNRRR 180
Query: 617 TADGYQRWMMKAANNGPAAFGETEKFDEKDTGGAT--GRGNKKATADDDEGNASXXXXXX 790
TADGYQRWMMKAANNGPAAFGE EK D+K+TGGA GRG KK T D++EGN S
Sbjct: 181 TADGYQRWMMKAANNGPAAFGEVEKLDDKETGGAAGGGRGRKKQTGDEEEGNVSDKAEED 240
Query: 791 XXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVGNDP 970
KNRLGLNK WEHEEIFTDDDEAVGNDP
Sbjct: 241 EEEEAERKNRLGLNKRSGDDDEEGPRGGDHDLDDDDIEKGDDWEHEEIFTDDDEAVGNDP 300
Query: 971 EEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNXXXXXXXX 1150
EEREDLAPEVPAPPEIKQ +
Sbjct: 301 EEREDLAPEVPAPPEIKQDEEDEDDSNEEEGGLSKSGKELKKLLGKAAGMND--SDAEDD 358
Query: 1151 XXXXXXXXIGMSPVLAPKQKDTPKEEPIDNSPSKTVAGSVXXXXXXXXXXXXXXXXXXDD 1330
IG+SPVLAPKQKD PKEEP DNSP K+ S DD
Sbjct: 359 DDDEEEDEIGLSPVLAPKQKDVPKEEPADNSPMKSATASARSTPPTSKSSKGKRKSNGDD 418
Query: 1331 TKSVNGASAKKAKTENDSKSSTKDGSASAPRGGTVAQKGS-ASSIKTESESPVGPVTEDE 1507
K+ NG KK KTEN+SKSS KD S P T KG+ +SS+KT S S GPVTEDE
Sbjct: 419 MKTTNGGPPKKVKTENESKSSAKDEGPS-PSKVTATPKGTPSSSVKTGSTSSAGPVTEDE 477
Query: 1508 IRAVLLQKSPVTTQDLVAKFKSRLKGSRDKAAFADILKKISKIQKVNGSSFVVLREK 1678
IRAVLLQK+PVTTQDLVAKFK+RLK DK AFADIL++ISKIQK NG ++VVLR+K
Sbjct: 478 IRAVLLQKAPVTTQDLVAKFKARLKSQEDKKAFADILRRISKIQKTNGPNYVVLRDK 534
>ref|XP_002519387.1| tfiif-alpha, putative [Ricinus communis] gi|223541454|gb|EEF43004.1|
tfiif-alpha, putative [Ricinus communis]
Length = 533
Score = 591 bits (1524), Expect = e-166
Identities = 321/540 (59%), Positives = 362/540 (67%), Gaps = 3/540 (0%)
Frame = +2
Query: 68 SFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYNV 247
+ DL LK C GCGS DLYGSNCKH+TLC++CGK MAEN KC+DCG V+RLIREYNV
Sbjct: 3 TMDLMLKGSCSGCGSTTDLYGSNCKHMTLCLSCGKTMAENHAKCFDCGATVSRLIREYNV 62
Query: 248 RTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLLE 421
R ++S++KNYFIGRFV+GLP FSKKKNAE KW +QKEGLQGR +TDALREKYKN+PWLLE
Sbjct: 63 RASSSSDKNYFIGRFVTGLPSFSKKKNAENKWSLQKEGLQGRQLTDALREKYKNRPWLLE 122
Query: 422 DETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSWYNFNKVAQYKQLTLEEAEEKM 601
DETGQFQY G LEGSQSATYYLL++Q GKEFVAIPA SWYNFNKVAQYKQLTLEEAEEKM
Sbjct: 123 DETGQFQYQGHLEGSQSATYYLLILQ-GKEFVAIPASSWYNFNKVAQYKQLTLEEAEEKM 181
Query: 602 KNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGATGRGNKKATADDDEGNASXXX 781
+NRRKTADGY+RWMMKAANNGPAAFGE EK D+KD+G A+GRG KKA DD+EGN S
Sbjct: 182 RNRRKTADGYERWMMKAANNGPAAFGEVEKLDDKDSGAASGRGRKKAAGDDEEGNVSDRG 241
Query: 782 XXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDDEAVG 961
KNRLGLNK WEHEEIFTDDDEAVG
Sbjct: 242 DEDEEEEAARKNRLGLNKRGGDDDEEGPRGGDHDIDDDDIEKGDDWEHEEIFTDDDEAVG 301
Query: 962 NDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNXXXXX 1141
ND EEREDLAPEVPAPPEIKQ N
Sbjct: 302 NDREEREDLAPEVPAPPEIKQ--DEDDEDEENEEGGLSKSGKELKKLLGRAGGLNDSDAE 359
Query: 1142 XXXXXXXXXXXIGMSPVLAPKQKDTPKEEPIDNSPSKTV-AGSVXXXXXXXXXXXXXXXX 1318
+ +SPVLAPKQ TPKEEP DNSP+K + + S
Sbjct: 360 DDDDDDDMDEDVSISPVLAPKQ--TPKEEPADNSPAKPMTSASSKGTPSTSKSAKGKRKL 417
Query: 1319 XXDDTKSVNGASAKKAKTENDSKSSTKDGSASAPRGGTVAQKGSASSIKTESESPVGPVT 1498
D+ K N A KK KTEN+ K + K+ SA + + K + S KT S S PVT
Sbjct: 418 NSDEAKQTNVAPQKKVKTENELKPTVKEESAPTSK-SSATPKAAPPSAKTGSTS---PVT 473
Query: 1499 EDEIRAVLLQKSPVTTQDLVAKFKSRLKGSRDKAAFADILKKISKIQKVNGSSFVVLREK 1678
E+EIRAVLLQ PVTTQDLVA+FKSRLK S DK AFADIL++ISKIQK +GSS+VVLR+K
Sbjct: 474 EEEIRAVLLQNGPVTTQDLVARFKSRLKSSEDKKAFADILRRISKIQKTSGSSYVVLRDK 533
>ref|XP_002308775.1| predicted protein [Populus trichocarpa] gi|222854751|gb|EEE92298.1|
predicted protein [Populus trichocarpa]
Length = 541
Score = 583 bits (1502), Expect = e-164
Identities = 325/546 (59%), Positives = 359/546 (65%), Gaps = 8/546 (1%)
Frame = +2
Query: 65 MSFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 244
MSFDL L+P C GCGS DLYGSNCKH+TLC+ CGK MAENR KC+DCG VTRLIREYN
Sbjct: 1 MSFDLQLQPSCSGCGSTTDLYGSNCKHMTLCLTCGKTMAENRGKCFDCGAIVTRLIREYN 60
Query: 245 VRTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 418
VR + S+EKNYFIGRFV+GLP FSKKKNAE KW + KEG+ GR +TD LREK+KNKPWLL
Sbjct: 61 VRASTSSEKNYFIGRFVTGLPGFSKKKNAENKWSLLKEGIHGRQITDTLREKFKNKPWLL 120
Query: 419 EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSW--YNFNKVAQYKQLTLEEAE 592
EDETGQFQY G LEGSQSATYYLL+M GKEFVAIPAGSW YNFNKVA YKQLTLEEAE
Sbjct: 121 EDETGQFQYQGHLEGSQSATYYLLMM-SGKEFVAIPAGSWYGYNFNKVAHYKQLTLEEAE 179
Query: 593 EKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGATGR-GNKKATADDDEGNA 769
EKMKNRRKTADGY+RWMMKAA+NG AAFGE EK D+KD A GR G KKA DDDEGN
Sbjct: 180 EKMKNRRKTADGYERWMMKAAHNGAAAFGEVEKPDDKDGVSAGGRGGRKKANGDDDEGNV 239
Query: 770 SXXXXXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDD 949
S K+RLGLNK WEHEEIFTDDD
Sbjct: 240 SDKGEEDEEEEAGRKSRLGLNKGGGDDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 299
Query: 950 EAVGNDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNX 1129
EAV DPEEREDLAPEVPAPPEIKQ +
Sbjct: 300 EAVAIDPEEREDLAPEVPAPPEIKQDEEDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359
Query: 1130 XXXXXXXXXXXXXXXIGMSPVLAPKQKD-TPKEEPIDNSPSK-TVAGSVXXXXXXXXXXX 1303
+SPVLAPKQKD PKEEP DNSP+K T GS
Sbjct: 360 AEDDDDDDDMDD----DISPVLAPKQKDAVPKEEPADNSPAKPTPPGSAKGTPSTSKSAK 415
Query: 1304 XXXXXXXDDTKSVNGASAKKAKTENDSKSSTKDGSASAPRGGTVAQKGSASSIKT-ESES 1480
DD K+ NGA KK KTEN+ K + K+ S+ A + GT K SS KT +
Sbjct: 416 GKRKLNADDAKTSNGAPVKKVKTENEVKPTVKEESSPATK-GTATPKIMPSSSKTGPTSG 474
Query: 1481 PVGPVTEDEIRAVLLQKSPVTTQDLVAKFKSRLKGSRDKAAFADILKKISKIQKVNGSSF 1660
P GPVTE+EIRAVLLQ PVTTQDLVA+FKSRL+ DK AFADIL++ISKIQK +GS+F
Sbjct: 475 PTGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNF 534
Query: 1661 VVLREK 1678
VVLR+K
Sbjct: 535 VVLRDK 540
>ref|XP_002322538.1| predicted protein [Populus trichocarpa] gi|222867168|gb|EEF04299.1|
predicted protein [Populus trichocarpa]
Length = 540
Score = 573 bits (1477), Expect = e-161
Identities = 321/546 (58%), Positives = 360/546 (65%), Gaps = 8/546 (1%)
Frame = +2
Query: 65 MSFDLHLKPQCGGCGSQKDLYGSNCKHLTLCINCGKKMAENRNKCYDCGVPVTRLIREYN 244
MSFDL LKP C GCGS DLYGSNCKH+TLC+NCGK MAENR KC+DCG V+RLIREYN
Sbjct: 1 MSFDLLLKPSCSGCGSTTDLYGSNCKHMTLCLNCGKTMAENRGKCFDCGTTVSRLIREYN 60
Query: 245 VRTNASTEKNYFIGRFVSGLP-FSKKKNAE-KWCIQKEGLQGRNVTDALREKYKNKPWLL 418
VR + S++KNYFIGRFV+GLP FSKKKNAE KW + KEG+ GR +TDALREK+KNKPWLL
Sbjct: 61 VRASTSSDKNYFIGRFVTGLPSFSKKKNAENKWSLHKEGILGRQITDALREKFKNKPWLL 120
Query: 419 EDETGQFQYHGQLEGSQSATYYLLVMQQGKEFVAIPAGSW--YNFNKVAQYKQLTLEEAE 592
EDETGQ QY G LEGSQSATYYLL+M GKEFVAIPAGSW YNFNKVA YKQLTLEEAE
Sbjct: 121 EDETGQSQYQGHLEGSQSATYYLLMM-TGKEFVAIPAGSWYVYNFNKVAHYKQLTLEEAE 179
Query: 593 EKMKNRRKTADGYQRWMMKAANNGPAAFGETEKFDEKDTGGATGR-GNKKATADDDEGNA 769
EKMKNRRKTADGY+RWMMKAANNG AAFGE EK D+K+ A GR G +KA+ DDDEGN
Sbjct: 180 EKMKNRRKTADGYERWMMKAANNGAAAFGEVEKVDDKEGVSAGGRGGRRKASGDDDEGNV 239
Query: 770 SXXXXXXXXXXXXXKNRLGLNKXXXXXXXXXXXXXXXXXXXXXXXXXXXWEHEEIFTDDD 949
S K+RLGLNK WEHEEIFTDDD
Sbjct: 240 SDRGEEDEEEEAGRKSRLGLNKQGGGDDEEGPRGGDLDMDDDDIEKGDDWEHEEIFTDDD 299
Query: 950 EAVGNDPEEREDLAPEVPAPPEIKQXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXNX 1129
EAV DPEEREDLAPEVPAPPEIKQ +
Sbjct: 300 EAVAIDPEEREDLAPEVPAPPEIKQDEDDEDEENEEGGLSKSGKELKKLLGKANGLNESD 359
Query: 1130 XXXXXXXXXXXXXXXIGMSPVLAPKQKD-TPKEEPIDNSPSK-TVAGSVXXXXXXXXXXX 1303
+SPVLAPKQKD PKEE D SP+K T +GS
Sbjct: 360 VEDDDDDEDMDD----DISPVLAPKQKDVVPKEEAADISPAKPTPSGSAKGTPSTSKSAK 415
Query: 1304 XXXXXXXDDTKSVNGASAKKAKTENDSKSSTKDGSASAPRGGTVAQKGSASSIKTESES- 1480
+D KS NGA KK KTEN+ K + K+ S+ A + GT K + S KT S S
Sbjct: 416 GKRKLNGEDAKSSNGAPVKKVKTENEVKPAVKEESSPATK-GTATPKVTPPSSKTGSTSG 474
Query: 1481 PVGPVTEDEIRAVLLQKSPVTTQDLVAKFKSRLKGSRDKAAFADILKKISKIQKVNGSSF 1660
GPVTE+EIRAVLLQ PVTTQDLVA+FKSRL+ DK AFADIL++ISKIQK +GS++
Sbjct: 475 STGPVTEEEIRAVLLQNGPVTTQDLVARFKSRLRTPEDKKAFADILRRISKIQKTSGSNY 534
Query: 1661 VVLREK 1678
VVLR+K
Sbjct: 535 VVLRDK 540