BLASTX nr result
ID: Coptis25_contig00011035
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00011035 (1442 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-... 79 2e-12 ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-... 77 1e-11 ref|XP_002516323.1| ATP binding protein, putative [Ricinus commu... 74 7e-11 ref|XP_002309928.1| chromatin remodeling complex subunit [Populu... 69 4e-09 ref|XP_002306264.1| chromatin remodeling complex subunit [Populu... 68 7e-09 >ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus] Length = 565 Score = 79.3 bits (194), Expect = 2e-12 Identities = 85/300 (28%), Positives = 126/300 (42%), Gaps = 21/300 (7%) Frame = +1 Query: 244 EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSPPMKRMDFDDSPP 402 EEKP KVKI GRRRLCK+SSR D +N +G PNFSGI DFDSP SPP Sbjct: 39 EEKPTKVKINGRRRLCKLSSREDDCLDNPEGFYFNAPNFSGITDFDSP---------SPP 89 Query: 403 KNNLYYESPKTKNLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEKKKG------ 564 P N + S IRDIL+DLS++L LS+EK++ Sbjct: 90 ------------------PPLPVENRVNKGSEIRDILNDLSARLELLSVEKRREKPKKVD 131 Query: 565 --DKFEAGY------ESTLSSTKEESPVRKGDRKGDVLLPDYDYSSADYRFXXXXXXXXX 720 + F A Y E+ + +E ++ + + LL + + Sbjct: 132 SIEDFSASYGGKGNEEANKADDREVESLKFSTKPSNSLLG--ESVKVEKAVKTLNVGGSG 189 Query: 721 XXXXXAVKSGAENDVVYNECYSFVDCNNDVEKIERPSVFNEDDEEGESSVYCTNNISEVQ 900 + + + DV + C D E++ N+ D+ + C + +VQ Sbjct: 190 EYGEEILPNKVKVDVFDEGIHKVDTCGKDSEQLLNLEHGNKHDKGRDK---CRS--QDVQ 244 Query: 901 KKYSGMEKIERKPAFNEEGDGFVDCESDVENANETPEKNHTFEKTERKYGFYDKGDGFVD 1080 K Y+ + K P +EG+ V+ E D N + F + R+ G Y++ DG D Sbjct: 245 KTYNSLGK---SPVLIDEGE--VEDEDDCVVLN---HETRDFNEVRRQDGKYEEKDGGSD 296 >ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus] Length = 1016 Score = 77.0 bits (188), Expect = 1e-11 Identities = 89/300 (29%), Positives = 124/300 (41%), Gaps = 20/300 (6%) Frame = +1 Query: 244 EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSPPMKRMDFDDSPP 402 EEKP KVKI GRRRLCK+SSR D +N +G PNFSGI DFDSP SPP Sbjct: 39 EEKPTKVKINGRRRLCKLSSRENDCLDNPEGFYFNAPNFSGITDFDSP---------SPP 89 Query: 403 KNNLYYESPKTKNLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEK-----KKGD 567 P N + S IRDIL+DLS++L LS+EK KK D Sbjct: 90 ------------------PPLPVENRVNKGSEIRDILNDLSARLELLSVEKRREKPKKVD 131 Query: 568 KFEAGYESTLSSTKEESPVRKGDRKGDVL----LPDYDYSSADYRFXXXXXXXXXXXXXX 735 E + ++ E + DR+ + L P + Sbjct: 132 SIE-DFSASSGGKGNEEANKADDREVESLKFSTKPSNSLLGESVKVEKAVKTLNVGGSGE 190 Query: 736 AVKSGAENDV---VYNECYSFVD-CNNDVEKIERPSVFNEDDEEGESSVYCTNNISEVQK 903 + N V V++E VD C D E++ N+ D+ + C + +VQK Sbjct: 191 YGEEILPNKVKVDVFDEGIHKVDTCGKDSEQLLNLEHGNKHDKGRDK---CRS--QDVQK 245 Query: 904 KYSGMEKIERKPAFNEEGDGFVDCESDVENANETPEKNHTFEKTERKYGFYDKGDGFVDR 1083 Y+ + K P +EG+ V+ E D N + + + KY D G +D+ Sbjct: 246 TYNSLGK---SPVLIDEGE--VEDEDDCVVLNHETRDFNEVRRQDGKYEEKDDGSDGLDK 300 >ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis] gi|223544553|gb|EEF46070.1| ATP binding protein, putative [Ricinus communis] Length = 1109 Score = 74.3 bits (181), Expect = 7e-11 Identities = 85/304 (27%), Positives = 125/304 (41%), Gaps = 36/304 (11%) Frame = +1 Query: 241 EEEKPQKVKIEGRRRLCKVSSRDAEENDDGPNFSGIMDFDSPP-MKRMDFDDSPPKNN-- 411 EE KP K+K+EG RRLCK S+ D + N P F G+ DFDS +R+ S K N Sbjct: 41 EEGKPSKIKLEGLRRLCKASAVDDDHNI--PRFFGVTDFDSSSGRRRLCKLSSRDKENAG 98 Query: 412 --LYYESPKTKNL-NLDTPETKNV------NLDSPESTIRDILDDLSSKLNYLSIEKKKG 564 + P ++ + D+P N D+ E I DILDDLSS+L+ LSIEKK+G Sbjct: 99 SVTAVDEPSFADITDFDSPLPSKAMAGGKSNKDANE--IMDILDDLSSRLDLLSIEKKRG 156 Query: 565 -DKFEAGYESTLSSTKEESPVRKGDRKGDVLLPDYDYSSADYRFXXXXXXXXXXXXXXAV 741 DK G L P R G++K D LP+Y Sbjct: 157 VDKAPDGPSELL-------PGRDGEKKTD--LPEY------------------------A 183 Query: 742 KSGAENDVVYNECYSFVDCNNDVEKIERPSVFNEDDEEGESSVYC---TNNISEVQKKYS 912 +G+ +Y+ S +N ++ V D+ + S C +N+ E K Sbjct: 184 SAGSSFSDIYDSSDSSSVLSNSIDGGPESFVDKYDESQFLSKSRCDHFADNVHENNKNSR 243 Query: 913 GMEKIERKPAFNEE----GDGFV----------------DCESDVENANETPEKNHTFEK 1032 G+ + +++ G+ FV +CES V ET + H + Sbjct: 244 GLNMENKYRGVDDKLVAVGNSFVSNIEEEEDETNLRSESECESRVTRERETNKGTHRLKD 303 Query: 1033 TERK 1044 + K Sbjct: 304 NDSK 307 >ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222852831|gb|EEE90378.1| chromatin remodeling complex subunit [Populus trichocarpa] Length = 1108 Score = 68.6 bits (166), Expect = 4e-09 Identities = 50/114 (43%), Positives = 58/114 (50%), Gaps = 7/114 (6%) Frame = +1 Query: 241 EEEKPQKVKIEGRRRLCKVSSRD------AEENDDGPNFSGIMDFDSP-PMKRMDFDDSP 399 EEEKP KV+IEGRRRLCKVSS D EE D +F I DFDSP P K + Sbjct: 84 EEEKPTKVRIEGRRRLCKVSSGDDGDDASREEVKDDSSFDDIADFDSPIPSKSVG----- 138 Query: 400 PKNNLYYESPKTKNLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEKKK 561 D K VN I+DIL DL+S+L+ LSIEKK+ Sbjct: 139 -----------------DCGNNKGVN------EIKDILSDLTSRLDLLSIEKKR 169 >ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa] gi|222855713|gb|EEE93260.1| chromatin remodeling complex subunit [Populus trichocarpa] Length = 1058 Score = 67.8 bits (164), Expect = 7e-09 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 8/120 (6%) Frame = +1 Query: 226 SIPPSEEEKPQK----VKIEGRRRLCKVSSRDAEENDDGPNFSGIMDFDSPPMKRMDFDD 393 S PSEE++ ++ VK+EGRRR CK + E+D PNF GI DFDS P D D Sbjct: 35 SATPSEEDEEEESVFNVKLEGRRRFCKAEA----EDDSIPNFCGITDFDSSP----DNGD 86 Query: 394 SPPKNNLYYESPKTKNLNLDTP-ETKNV---NLDSPESTIRDILDDLSSKLNYLSIEKKK 561 + + +S + D+P +KNV + + + I+DIL+DL+S+L+ LSIEK++ Sbjct: 87 GESREEVKTDSSFDGIADFDSPIPSKNVGDCDNNRGVNEIKDILNDLTSRLDLLSIEKRR 146