BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00011035
         (1442 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-...    79   2e-12
ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-...    77   1e-11
ref|XP_002516323.1| ATP binding protein, putative [Ricinus commu...    74   7e-11
ref|XP_002309928.1| chromatin remodeling complex subunit [Populu...    69   4e-09
ref|XP_002306264.1| chromatin remodeling complex subunit [Populu...    68   7e-09

>ref|XP_004159269.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus]
          Length = 565

 Score = 79.3 bits (194), Expect = 2e-12
 Identities = 85/300 (28%), Positives = 126/300 (42%), Gaps = 21/300 (7%)
 Frame = +1

Query: 244  EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSPPMKRMDFDDSPP 402
            EEKP KVKI GRRRLCK+SSR  D  +N +G     PNFSGI DFDSP         SPP
Sbjct: 39   EEKPTKVKINGRRRLCKLSSREDDCLDNPEGFYFNAPNFSGITDFDSP---------SPP 89

Query: 403  KNNLYYESPKTKNLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEKKKG------ 564
                              P     N  +  S IRDIL+DLS++L  LS+EK++       
Sbjct: 90   ------------------PPLPVENRVNKGSEIRDILNDLSARLELLSVEKRREKPKKVD 131

Query: 565  --DKFEAGY------ESTLSSTKEESPVRKGDRKGDVLLPDYDYSSADYRFXXXXXXXXX 720
              + F A Y      E+  +  +E   ++   +  + LL   +    +            
Sbjct: 132  SIEDFSASYGGKGNEEANKADDREVESLKFSTKPSNSLLG--ESVKVEKAVKTLNVGGSG 189

Query: 721  XXXXXAVKSGAENDVVYNECYSFVDCNNDVEKIERPSVFNEDDEEGESSVYCTNNISEVQ 900
                  + +  + DV     +    C  D E++      N+ D+  +    C +   +VQ
Sbjct: 190  EYGEEILPNKVKVDVFDEGIHKVDTCGKDSEQLLNLEHGNKHDKGRDK---CRS--QDVQ 244

Query: 901  KKYSGMEKIERKPAFNEEGDGFVDCESDVENANETPEKNHTFEKTERKYGFYDKGDGFVD 1080
            K Y+ + K    P   +EG+  V+ E D    N    +   F +  R+ G Y++ DG  D
Sbjct: 245  KTYNSLGK---SPVLIDEGE--VEDEDDCVVLN---HETRDFNEVRRQDGKYEEKDGGSD 296


>ref|XP_004143401.1| PREDICTED: DNA excision repair protein ERCC-6-like [Cucumis sativus]
          Length = 1016

 Score = 77.0 bits (188), Expect = 1e-11
 Identities = 89/300 (29%), Positives = 124/300 (41%), Gaps = 20/300 (6%)
 Frame = +1

Query: 244  EEKPQKVKIEGRRRLCKVSSR--DAEENDDG-----PNFSGIMDFDSPPMKRMDFDDSPP 402
            EEKP KVKI GRRRLCK+SSR  D  +N +G     PNFSGI DFDSP         SPP
Sbjct: 39   EEKPTKVKINGRRRLCKLSSRENDCLDNPEGFYFNAPNFSGITDFDSP---------SPP 89

Query: 403  KNNLYYESPKTKNLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEK-----KKGD 567
                              P     N  +  S IRDIL+DLS++L  LS+EK     KK D
Sbjct: 90   ------------------PPLPVENRVNKGSEIRDILNDLSARLELLSVEKRREKPKKVD 131

Query: 568  KFEAGYESTLSSTKEESPVRKGDRKGDVL----LPDYDYSSADYRFXXXXXXXXXXXXXX 735
              E  + ++      E   +  DR+ + L     P         +               
Sbjct: 132  SIE-DFSASSGGKGNEEANKADDREVESLKFSTKPSNSLLGESVKVEKAVKTLNVGGSGE 190

Query: 736  AVKSGAENDV---VYNECYSFVD-CNNDVEKIERPSVFNEDDEEGESSVYCTNNISEVQK 903
              +    N V   V++E    VD C  D E++      N+ D+  +    C +   +VQK
Sbjct: 191  YGEEILPNKVKVDVFDEGIHKVDTCGKDSEQLLNLEHGNKHDKGRDK---CRS--QDVQK 245

Query: 904  KYSGMEKIERKPAFNEEGDGFVDCESDVENANETPEKNHTFEKTERKYGFYDKGDGFVDR 1083
             Y+ + K    P   +EG+  V+ E D    N      +   + + KY   D G   +D+
Sbjct: 246  TYNSLGK---SPVLIDEGE--VEDEDDCVVLNHETRDFNEVRRQDGKYEEKDDGSDGLDK 300


>ref|XP_002516323.1| ATP binding protein, putative [Ricinus communis]
            gi|223544553|gb|EEF46070.1| ATP binding protein, putative
            [Ricinus communis]
          Length = 1109

 Score = 74.3 bits (181), Expect = 7e-11
 Identities = 85/304 (27%), Positives = 125/304 (41%), Gaps = 36/304 (11%)
 Frame = +1

Query: 241  EEEKPQKVKIEGRRRLCKVSSRDAEENDDGPNFSGIMDFDSPP-MKRMDFDDSPPKNN-- 411
            EE KP K+K+EG RRLCK S+ D + N   P F G+ DFDS    +R+    S  K N  
Sbjct: 41   EEGKPSKIKLEGLRRLCKASAVDDDHNI--PRFFGVTDFDSSSGRRRLCKLSSRDKENAG 98

Query: 412  --LYYESPKTKNL-NLDTPETKNV------NLDSPESTIRDILDDLSSKLNYLSIEKKKG 564
                 + P   ++ + D+P           N D+ E  I DILDDLSS+L+ LSIEKK+G
Sbjct: 99   SVTAVDEPSFADITDFDSPLPSKAMAGGKSNKDANE--IMDILDDLSSRLDLLSIEKKRG 156

Query: 565  -DKFEAGYESTLSSTKEESPVRKGDRKGDVLLPDYDYSSADYRFXXXXXXXXXXXXXXAV 741
             DK   G    L       P R G++K D  LP+Y                         
Sbjct: 157  VDKAPDGPSELL-------PGRDGEKKTD--LPEY------------------------A 183

Query: 742  KSGAENDVVYNECYSFVDCNNDVEKIERPSVFNEDDEEGESSVYC---TNNISEVQKKYS 912
             +G+    +Y+   S    +N ++      V   D+ +  S   C    +N+ E  K   
Sbjct: 184  SAGSSFSDIYDSSDSSSVLSNSIDGGPESFVDKYDESQFLSKSRCDHFADNVHENNKNSR 243

Query: 913  GMEKIERKPAFNEE----GDGFV----------------DCESDVENANETPEKNHTFEK 1032
            G+    +    +++    G+ FV                +CES V    ET +  H  + 
Sbjct: 244  GLNMENKYRGVDDKLVAVGNSFVSNIEEEEDETNLRSESECESRVTRERETNKGTHRLKD 303

Query: 1033 TERK 1044
             + K
Sbjct: 304  NDSK 307


>ref|XP_002309928.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222852831|gb|EEE90378.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1108

 Score = 68.6 bits (166), Expect = 4e-09
 Identities = 50/114 (43%), Positives = 58/114 (50%), Gaps = 7/114 (6%)
 Frame = +1

Query: 241 EEEKPQKVKIEGRRRLCKVSSRD------AEENDDGPNFSGIMDFDSP-PMKRMDFDDSP 399
           EEEKP KV+IEGRRRLCKVSS D       EE  D  +F  I DFDSP P K +      
Sbjct: 84  EEEKPTKVRIEGRRRLCKVSSGDDGDDASREEVKDDSSFDDIADFDSPIPSKSVG----- 138

Query: 400 PKNNLYYESPKTKNLNLDTPETKNVNLDSPESTIRDILDDLSSKLNYLSIEKKK 561
                            D    K VN       I+DIL DL+S+L+ LSIEKK+
Sbjct: 139 -----------------DCGNNKGVN------EIKDILSDLTSRLDLLSIEKKR 169


>ref|XP_002306264.1| chromatin remodeling complex subunit [Populus trichocarpa]
           gi|222855713|gb|EEE93260.1| chromatin remodeling complex
           subunit [Populus trichocarpa]
          Length = 1058

 Score = 67.8 bits (164), Expect = 7e-09
 Identities = 47/120 (39%), Positives = 70/120 (58%), Gaps = 8/120 (6%)
 Frame = +1

Query: 226 SIPPSEEEKPQK----VKIEGRRRLCKVSSRDAEENDDGPNFSGIMDFDSPPMKRMDFDD 393
           S  PSEE++ ++    VK+EGRRR CK  +    E+D  PNF GI DFDS P    D  D
Sbjct: 35  SATPSEEDEEEESVFNVKLEGRRRFCKAEA----EDDSIPNFCGITDFDSSP----DNGD 86

Query: 394 SPPKNNLYYESPKTKNLNLDTP-ETKNV---NLDSPESTIRDILDDLSSKLNYLSIEKKK 561
              +  +  +S      + D+P  +KNV   + +   + I+DIL+DL+S+L+ LSIEK++
Sbjct: 87  GESREEVKTDSSFDGIADFDSPIPSKNVGDCDNNRGVNEIKDILNDLTSRLDLLSIEKRR 146