BLASTX nr result
ID: Coptis25_contig00010998
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00010998 (261 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002327956.1| predicted protein [Populus trichocarpa] gi|2... 134 8e-30 ref|XP_002263044.1| PREDICTED: U11/U12 small nuclear ribonucleop... 131 7e-29 ref|XP_002529752.1| U1 small nuclear ribonucleoprotein 70 kD, pu... 125 4e-27 ref|XP_003551845.1| PREDICTED: uncharacterized protein LOC100814... 124 8e-27 gb|AAB64330.1| putative U1 small nuclear ribonucleoprotein 70 kD... 123 1e-26 >ref|XP_002327956.1| predicted protein [Populus trichocarpa] gi|222837365|gb|EEE75744.1| predicted protein [Populus trichocarpa] Length = 317 Score = 134 bits (337), Expect = 8e-30 Identities = 70/108 (64%), Positives = 75/108 (69%), Gaps = 22/108 (20%) Frame = +3 Query: 3 DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116 DPFGD K IGD + KYGK+KNLRLVRHIVTGAS GYAFV Sbjct: 48 DPFGDPKAIGDPYCTIFVGRLSHLTTEDTLRKAMSKYGKVKNLRLVRHIVTGASRGYAFV 107 Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260 EFE++REMRRAY+D HS IDD EIIVDYN QQLMP WI RRLGGGLG Sbjct: 108 EFETEREMRRAYKDGQHSYIDDSEIIVDYNRQQLMPGWIPRRLGGGLG 155 >ref|XP_002263044.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein [Vitis vinifera] gi|297743756|emb|CBI36639.3| unnamed protein product [Vitis vinifera] Length = 340 Score = 131 bits (329), Expect = 7e-29 Identities = 66/108 (61%), Positives = 78/108 (72%), Gaps = 22/108 (20%) Frame = +3 Query: 3 DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116 DPFGD K+IGD + K+G++K+LRLVRHIVTGAS GYAFV Sbjct: 48 DPFGDPKVIGDPYCTVFVGHLNHLTTEDTLHKAMSKFGRVKSLRLVRHIVTGASQGYAFV 107 Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260 E+E++REMRRAY+DA HS+IDD EIIVDYN QQLMP WI RRLGGG+G Sbjct: 108 EYETEREMRRAYEDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGIG 155 >ref|XP_002529752.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Ricinus communis] gi|223530750|gb|EEF32618.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Ricinus communis] Length = 389 Score = 125 bits (314), Expect = 4e-27 Identities = 66/108 (61%), Positives = 73/108 (67%), Gaps = 22/108 (20%) Frame = +3 Query: 3 DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116 DP GD K+IGD + KYGK++NLRLVR IVTGAS GYAFV Sbjct: 48 DPLGDPKVIGDPFCTLFVGRLSHSTTENTLLKAMSKYGKVRNLRLVRDIVTGASRGYAFV 107 Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260 E+ ++REMRRAY DA HS IDD EIIVDYN QQLMP WI RRLGGGLG Sbjct: 108 EYGTEREMRRAYMDAHHSFIDDSEIIVDYNRQQLMPGWIPRRLGGGLG 155 >ref|XP_003551845.1| PREDICTED: uncharacterized protein LOC100814109 [Glycine max] Length = 347 Score = 124 bits (311), Expect = 8e-27 Identities = 65/107 (60%), Positives = 72/107 (67%), Gaps = 22/107 (20%) Frame = +3 Query: 3 DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116 DPFGD K GD + KYG++KNLRLVR IVTGAS GYAFV Sbjct: 50 DPFGDPKATGDPYCTLFVARLSRLTTEDDLRKVMSKYGRVKNLRLVRDIVTGASRGYAFV 109 Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGL 257 E+E++REMRRAY DA H I+DD EIIVDYN QQLMP WI RRLGGGL Sbjct: 110 EYETEREMRRAYMDAHHLIVDDSEIIVDYNRQQLMPGWIPRRLGGGL 156 >gb|AAB64330.1| putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis thaliana] Length = 292 Score = 123 bits (309), Expect = 1e-26 Identities = 63/108 (58%), Positives = 74/108 (68%), Gaps = 22/108 (20%) Frame = +3 Query: 3 DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116 DP GD+K +GD + KYG++KNLRLVRHIVTGAS GY FV Sbjct: 45 DPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFV 104 Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260 E+E+++EM RAY+DA HS+ID EIIVDYN QQLMP WI RRLGGGLG Sbjct: 105 EYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLG 152