BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010998
         (261 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002327956.1| predicted protein [Populus trichocarpa] gi|2...   134   8e-30
ref|XP_002263044.1| PREDICTED: U11/U12 small nuclear ribonucleop...   131   7e-29
ref|XP_002529752.1| U1 small nuclear ribonucleoprotein 70 kD, pu...   125   4e-27
ref|XP_003551845.1| PREDICTED: uncharacterized protein LOC100814...   124   8e-27
gb|AAB64330.1| putative U1 small nuclear ribonucleoprotein 70 kD...   123   1e-26

>ref|XP_002327956.1| predicted protein [Populus trichocarpa] gi|222837365|gb|EEE75744.1|
           predicted protein [Populus trichocarpa]
          Length = 317

 Score =  134 bits (337), Expect = 8e-30
 Identities = 70/108 (64%), Positives = 75/108 (69%), Gaps = 22/108 (20%)
 Frame = +3

Query: 3   DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116
           DPFGD K IGD                      + KYGK+KNLRLVRHIVTGAS GYAFV
Sbjct: 48  DPFGDPKAIGDPYCTIFVGRLSHLTTEDTLRKAMSKYGKVKNLRLVRHIVTGASRGYAFV 107

Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260
           EFE++REMRRAY+D  HS IDD EIIVDYN QQLMP WI RRLGGGLG
Sbjct: 108 EFETEREMRRAYKDGQHSYIDDSEIIVDYNRQQLMPGWIPRRLGGGLG 155


>ref|XP_002263044.1| PREDICTED: U11/U12 small nuclear ribonucleoprotein 35 kDa protein
           [Vitis vinifera] gi|297743756|emb|CBI36639.3| unnamed
           protein product [Vitis vinifera]
          Length = 340

 Score =  131 bits (329), Expect = 7e-29
 Identities = 66/108 (61%), Positives = 78/108 (72%), Gaps = 22/108 (20%)
 Frame = +3

Query: 3   DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116
           DPFGD K+IGD                      + K+G++K+LRLVRHIVTGAS GYAFV
Sbjct: 48  DPFGDPKVIGDPYCTVFVGHLNHLTTEDTLHKAMSKFGRVKSLRLVRHIVTGASQGYAFV 107

Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260
           E+E++REMRRAY+DA HS+IDD EIIVDYN QQLMP WI RRLGGG+G
Sbjct: 108 EYETEREMRRAYEDAHHSMIDDCEIIVDYNRQQLMPGWIPRRLGGGIG 155


>ref|XP_002529752.1| U1 small nuclear ribonucleoprotein 70 kD, putative [Ricinus
           communis] gi|223530750|gb|EEF32618.1| U1 small nuclear
           ribonucleoprotein 70 kD, putative [Ricinus communis]
          Length = 389

 Score =  125 bits (314), Expect = 4e-27
 Identities = 66/108 (61%), Positives = 73/108 (67%), Gaps = 22/108 (20%)
 Frame = +3

Query: 3   DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116
           DP GD K+IGD                      + KYGK++NLRLVR IVTGAS GYAFV
Sbjct: 48  DPLGDPKVIGDPFCTLFVGRLSHSTTENTLLKAMSKYGKVRNLRLVRDIVTGASRGYAFV 107

Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260
           E+ ++REMRRAY DA HS IDD EIIVDYN QQLMP WI RRLGGGLG
Sbjct: 108 EYGTEREMRRAYMDAHHSFIDDSEIIVDYNRQQLMPGWIPRRLGGGLG 155


>ref|XP_003551845.1| PREDICTED: uncharacterized protein LOC100814109 [Glycine max]
          Length = 347

 Score =  124 bits (311), Expect = 8e-27
 Identities = 65/107 (60%), Positives = 72/107 (67%), Gaps = 22/107 (20%)
 Frame = +3

Query: 3   DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116
           DPFGD K  GD                      + KYG++KNLRLVR IVTGAS GYAFV
Sbjct: 50  DPFGDPKATGDPYCTLFVARLSRLTTEDDLRKVMSKYGRVKNLRLVRDIVTGASRGYAFV 109

Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGL 257
           E+E++REMRRAY DA H I+DD EIIVDYN QQLMP WI RRLGGGL
Sbjct: 110 EYETEREMRRAYMDAHHLIVDDSEIIVDYNRQQLMPGWIPRRLGGGL 156


>gb|AAB64330.1| putative U1 small nuclear ribonucleoprotein 70 kDa [Arabidopsis
           thaliana]
          Length = 292

 Score =  123 bits (309), Expect = 1e-26
 Identities = 63/108 (58%), Positives = 74/108 (68%), Gaps = 22/108 (20%)
 Frame = +3

Query: 3   DPFGDAKLIGD----------------------LGKYGKMKNLRLVRHIVTGASCGYAFV 116
           DP GD+K +GD                      + KYG++KNLRLVRHIVTGAS GY FV
Sbjct: 45  DPSGDSKAVGDPYCTLFVGRLSHHTTEDTLREVMSKYGRIKNLRLVRHIVTGASRGYGFV 104

Query: 117 EFESQREMRRAYQDADHSIIDDVEIIVDYNWQQLMPSWISRRLGGGLG 260
           E+E+++EM RAY+DA HS+ID  EIIVDYN QQLMP WI RRLGGGLG
Sbjct: 105 EYETEKEMLRAYEDAHHSLIDGREIIVDYNRQQLMPGWIPRRLGGGLG 152