BLASTX nr result
ID: Coptis25_contig00010947
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00010947
(1288 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CBI24213.3| unnamed protein product [Vitis vinifera] 248 3e-63
ref|XP_002275100.1| PREDICTED: chromodomain-helicase-DNA-binding... 248 3e-63
ref|XP_002313369.1| chromatin remodeling complex subunit [Populu... 231 4e-58
ref|XP_004156041.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain... 218 3e-54
ref|XP_004140283.1| PREDICTED: chromodomain-helicase-DNA-binding... 218 3e-54
>emb|CBI24213.3| unnamed protein product [Vitis vinifera]
Length = 1539
Score = 248 bits (632), Expect = 3e-63
Identities = 128/208 (61%), Positives = 150/208 (72%)
Frame = -1
Query: 943 NKKNYMEDAQPENSSKRKTRGLDPHERVQKRRKADHLVNLTPMIEGAPTQVRGWSYGNLS 764
N K+Y E QPE SKRK + +P ER QKRRKAD+LV+L P IEGA QVRGWSYGNL
Sbjct: 1005 NTKSYAEANQPERISKRKKKAAEPQERAQKRRKADYLVHLVPRIEGAAAQVRGWSYGNLP 1064
Query: 763 KKDAALFARVVQLNHYRYFLMEVKKFGIHSQIRSXXXXXXXXXXXAPTDAQVELFDALID 584
K+DA+ F+R V KFG SQI S APT+AQ+ELFDALID
Sbjct: 1065 KRDASRFSRAVL------------KFGNPSQIGSIVMEVGGTIEAAPTEAQIELFDALID 1112
Query: 583 GYREAVEGGKPDPKGTVLDFFGVPVKAHEVLDRVQELQLLAKSIKKYKDPVAQFRLLMHF 404
G REAV+ G DPKG +LDFFGVPVKA+EVL+RVQELQLLAK I +Y+DP+AQFR+LM+
Sbjct: 1113 GCREAVKEGNLDPKGPMLDFFGVPVKANEVLNRVQELQLLAKRISRYEDPIAQFRVLMYL 1172
Query: 403 RGPPWSKGCGWDQADDARLLFGIHYYGF 320
+ WSKGCGW+Q DDARLL GIHY+GF
Sbjct: 1173 KPSNWSKGCGWNQIDDARLLLGIHYHGF 1200
Score = 68.2 bits (165), Expect(2) = 3e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = -2
Query: 1287 EEKNEEESRKKLLNMDIDEILERAEKVESKGAEEEQGNELLSAFK 1153
E+KNEEES+K+LL+MDIDEILERAEKVE K EE GNELLSAFK
Sbjct: 925 EDKNEEESKKRLLSMDIDEILERAEKVEEKETGEE-GNELLSAFK 968
Score = 44.3 bits (103), Expect(2) = 3e-16
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = -3
Query: 1154 SKFCGAEDDGTFWSRWIQPDAVAQAD 1077
+ F AEDDG+FWSRWI+P+AVA+A+
Sbjct: 970 ANFGSAEDDGSFWSRWIKPEAVAEAE 995
>ref|XP_002275100.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Vitis
vinifera]
Length = 1764
Score = 248 bits (632), Expect = 3e-63
Identities = 128/208 (61%), Positives = 150/208 (72%)
Frame = -1
Query: 943 NKKNYMEDAQPENSSKRKTRGLDPHERVQKRRKADHLVNLTPMIEGAPTQVRGWSYGNLS 764
N K+Y E QPE SKRK + +P ER QKRRKAD+LV+L P IEGA QVRGWSYGNL
Sbjct: 1202 NTKSYAEANQPERISKRKKKAAEPQERAQKRRKADYLVHLVPRIEGAAAQVRGWSYGNLP 1261
Query: 763 KKDAALFARVVQLNHYRYFLMEVKKFGIHSQIRSXXXXXXXXXXXAPTDAQVELFDALID 584
K+DA+ F+R V KFG SQI S APT+AQ+ELFDALID
Sbjct: 1262 KRDASRFSRAVL------------KFGNPSQIGSIVMEVGGTIEAAPTEAQIELFDALID 1309
Query: 583 GYREAVEGGKPDPKGTVLDFFGVPVKAHEVLDRVQELQLLAKSIKKYKDPVAQFRLLMHF 404
G REAV+ G DPKG +LDFFGVPVKA+EVL+RVQELQLLAK I +Y+DP+AQFR+LM+
Sbjct: 1310 GCREAVKEGNLDPKGPMLDFFGVPVKANEVLNRVQELQLLAKRISRYEDPIAQFRVLMYL 1369
Query: 403 RGPPWSKGCGWDQADDARLLFGIHYYGF 320
+ WSKGCGW+Q DDARLL GIHY+GF
Sbjct: 1370 KPSNWSKGCGWNQIDDARLLLGIHYHGF 1397
Score = 68.2 bits (165), Expect(2) = 3e-16
Identities = 36/45 (80%), Positives = 40/45 (88%)
Frame = -2
Query: 1287 EEKNEEESRKKLLNMDIDEILERAEKVESKGAEEEQGNELLSAFK 1153
E+KNEEES+K+LL+MDIDEILERAEKVE K EE GNELLSAFK
Sbjct: 1122 EDKNEEESKKRLLSMDIDEILERAEKVEEKETGEE-GNELLSAFK 1165
Score = 44.3 bits (103), Expect(2) = 3e-16
Identities = 17/26 (65%), Positives = 23/26 (88%)
Frame = -3
Query: 1154 SKFCGAEDDGTFWSRWIQPDAVAQAD 1077
+ F AEDDG+FWSRWI+P+AVA+A+
Sbjct: 1167 ANFGSAEDDGSFWSRWIKPEAVAEAE 1192
>ref|XP_002313369.1| chromatin remodeling complex subunit [Populus trichocarpa]
gi|222849777|gb|EEE87324.1| chromatin remodeling complex
subunit [Populus trichocarpa]
Length = 1748
Score = 231 bits (588), Expect = 4e-58
Identities = 122/211 (57%), Positives = 148/211 (70%), Gaps = 3/211 (1%)
Frame = -1
Query: 943 NKKNYMEDAQPENSSKRKTRGLDP---HERVQKRRKADHLVNLTPMIEGAPTQVRGWSYG 773
N K+Y ED QP S+KRK +G +P ERVQKRRK+D+ L PMIEGA +QVR WS+G
Sbjct: 1215 NTKSYAEDNQPGRSNKRKKKGSEPPEPQERVQKRRKSDYSAPLAPMIEGASSQVREWSHG 1274
Query: 772 NLSKKDAALFARVVQLNHYRYFLMEVKKFGIHSQIRSXXXXXXXXXXXAPTDAQVELFDA 593
NL K+DA F+RVV KFG +QI AP DAQ+ELFDA
Sbjct: 1275 NLPKRDALRFSRVVI------------KFGNLNQIDLIAEEVGGTVAAAPPDAQIELFDA 1322
Query: 592 LIDGYREAVEGGKPDPKGTVLDFFGVPVKAHEVLDRVQELQLLAKSIKKYKDPVAQFRLL 413
L+DG REAVE G DPKG +LDFFGVPVKA+++L RVQELQLLAK I +Y++P+AQFR+L
Sbjct: 1323 LVDGCREAVEVGNLDPKGPLLDFFGVPVKANDLLSRVQELQLLAKRISRYENPIAQFRVL 1382
Query: 412 MHFRGPPWSKGCGWDQADDARLLFGIHYYGF 320
M+ + WSKGCGW+Q DDARLL GIHY+GF
Sbjct: 1383 MYLKPSNWSKGCGWNQIDDARLLLGIHYHGF 1413
Score = 69.7 bits (169), Expect(2) = 1e-17
Identities = 34/45 (75%), Positives = 40/45 (88%)
Frame = -2
Query: 1287 EEKNEEESRKKLLNMDIDEILERAEKVESKGAEEEQGNELLSAFK 1153
E++N+EES+K+LL+MDIDEILERAEKVE K A EQGNELL AFK
Sbjct: 1112 EDRNDEESKKRLLSMDIDEILERAEKVEEKEAGGEQGNELLGAFK 1156
Score = 47.4 bits (111), Expect(2) = 1e-17
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = -3
Query: 1154 SKFCGAEDDGTFWSRWIQPDAVAQAD 1077
+ FC AE+DG+FWSRWI+PDAVA+A+
Sbjct: 1180 ANFCCAENDGSFWSRWIKPDAVAEAE 1205
>ref|XP_004156041.1| PREDICTED: LOW QUALITY PROTEIN: chromodomain-helicase-DNA-binding
protein 2-like [Cucumis sativus]
Length = 1761
Score = 218 bits (554), Expect = 3e-54
Identities = 119/208 (57%), Positives = 137/208 (65%)
Frame = -1
Query: 943 NKKNYMEDAQPENSSKRKTRGLDPHERVQKRRKADHLVNLTPMIEGAPTQVRGWSYGNLS 764
N K+Y E QPENS KRK +G P ERVQKRRK D PMIEGA QVR WS GNLS
Sbjct: 1213 NTKSYAEANQPENSGKRK-KGSGPVERVQKRRKGDISAPTAPMIEGASAQVRRWSCGNLS 1271
Query: 763 KKDAALFARVVQLNHYRYFLMEVKKFGIHSQIRSXXXXXXXXXXXAPTDAQVELFDALID 584
K+DA F RVV KFG SQI A + Q ELF+ALID
Sbjct: 1272 KRDALRFYRVVM------------KFGNESQISLIAGEVGGAVAAAKPEEQRELFNALID 1319
Query: 583 GYREAVEGGKPDPKGTVLDFFGVPVKAHEVLDRVQELQLLAKSIKKYKDPVAQFRLLMHF 404
G R+AVE G DPKG +LDFFGV VKA+E+L+RV+ELQLLAK I +Y+DP+ QFR LMH
Sbjct: 1320 GCRDAVESGSTDPKGPMLDFFGVLVKANELLNRVEELQLLAKRISRYEDPIKQFRALMHL 1379
Query: 403 RGPPWSKGCGWDQADDARLLFGIHYYGF 320
+ WSKGCGW+Q DDARLL G+HY+GF
Sbjct: 1380 KPSNWSKGCGWNQIDDARLLLGVHYHGF 1407
Score = 67.0 bits (162), Expect(2) = 3e-17
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = -2
Query: 1287 EEKNEEESRKKLLNMDIDEILERAEKVESKGAEEEQGNELLSAFK*VLWC 1138
E+KN+E+S+K+L +MDIDEILERAEKVE K A E+G+ELLSAFK +C
Sbjct: 1132 EDKNDEDSKKRLQSMDIDEILERAEKVEEKEAGGEEGHELLSAFKVANFC 1181
Score = 48.9 bits (115), Expect(2) = 3e-17
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = -3
Query: 1154 SKFCGAEDDGTFWSRWIQPDAVAQAD 1077
+ FC AEDDG+FWSRWI+P+AV+QA+
Sbjct: 1178 ANFCSAEDDGSFWSRWIKPEAVSQAE 1203
>ref|XP_004140283.1| PREDICTED: chromodomain-helicase-DNA-binding protein 2-like [Cucumis
sativus]
Length = 1777
Score = 218 bits (554), Expect = 3e-54
Identities = 119/208 (57%), Positives = 137/208 (65%)
Frame = -1
Query: 943 NKKNYMEDAQPENSSKRKTRGLDPHERVQKRRKADHLVNLTPMIEGAPTQVRGWSYGNLS 764
N K+Y E QPENS KRK +G P ERVQKRRK D PMIEGA QVR WS GNLS
Sbjct: 1229 NTKSYAEANQPENSGKRK-KGSGPVERVQKRRKGDISAPTAPMIEGASAQVRRWSCGNLS 1287
Query: 763 KKDAALFARVVQLNHYRYFLMEVKKFGIHSQIRSXXXXXXXXXXXAPTDAQVELFDALID 584
K+DA F RVV KFG SQI A + Q ELF+ALID
Sbjct: 1288 KRDALRFYRVVM------------KFGNESQISLIAGEVGGAVAAAKPEEQRELFNALID 1335
Query: 583 GYREAVEGGKPDPKGTVLDFFGVPVKAHEVLDRVQELQLLAKSIKKYKDPVAQFRLLMHF 404
G R+AVE G DPKG +LDFFGV VKA+E+L+RV+ELQLLAK I +Y+DP+ QFR LMH
Sbjct: 1336 GCRDAVESGSTDPKGPMLDFFGVLVKANELLNRVEELQLLAKRISRYEDPIKQFRALMHL 1395
Query: 403 RGPPWSKGCGWDQADDARLLFGIHYYGF 320
+ WSKGCGW+Q DDARLL G+HY+GF
Sbjct: 1396 KPSNWSKGCGWNQIDDARLLLGVHYHGF 1423
Score = 67.0 bits (162), Expect(2) = 3e-17
Identities = 33/50 (66%), Positives = 42/50 (84%)
Frame = -2
Query: 1287 EEKNEEESRKKLLNMDIDEILERAEKVESKGAEEEQGNELLSAFK*VLWC 1138
E+KN+E+S+K+L +MDIDEILERAEKVE K A E+G+ELLSAFK +C
Sbjct: 1148 EDKNDEDSKKRLQSMDIDEILERAEKVEEKEAGGEEGHELLSAFKVANFC 1197
Score = 48.9 bits (115), Expect(2) = 3e-17
Identities = 18/26 (69%), Positives = 24/26 (92%)
Frame = -3
Query: 1154 SKFCGAEDDGTFWSRWIQPDAVAQAD 1077
+ FC AEDDG+FWSRWI+P+AV+QA+
Sbjct: 1194 ANFCSAEDDGSFWSRWIKPEAVSQAE 1219