BLASTX nr result

ID: Coptis25_contig00010929 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010929
         (991 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]   307   2e-81
ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containi...   304   2e-80
ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricope...   298   1e-78
emb|CBI36964.3| unnamed protein product [Vitis vinifera]              298   1e-78
ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|2...   290   4e-76

>emb|CAN71816.1| hypothetical protein VITISV_023421 [Vitis vinifera]
          Length = 494

 Score =  307 bits (787), Expect = 2e-81
 Identities = 155/332 (46%), Positives = 227/332 (68%), Gaps = 3/332 (0%)
 Frame = +1

Query: 4    KSRGVEAAEKYFTDLPNSAKNKSTYGALLHCFCCEEMTEKAMMLFGKMKELNFPINSFDY 183
            K+ G+  AE YF  L  SAK   TYGALL+C+C E M +KA+ LF K+KELNF  ++  Y
Sbjct: 108  KTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMVDKAVELFKKLKELNFVSSALSY 167

Query: 184  CSLMSLHLRLGQPEKVPLLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKM 363
             +++SL+LR+GQPEKVP L  E+++K I   L+ Y LL+NSYAS+KD ++VE V+E++K 
Sbjct: 168  NNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLEKMKK 227

Query: 364  IKGITPDWAFYSNVAAIYVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVE 540
             +G+  DW  Y N+A IYV AG+ +KA   L+++E +K L+DP+AF  L+++YA    +E
Sbjct: 228  -RGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLE 286

Query: 541  EVNRVWQSLKSAFPKTSNLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLI 720
             VNR W+SLK A PK +N SYL ML  LS+L  + GL++CF EWE  CS+YD+RL+NV++
Sbjct: 287  GVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVML 346

Query: 721  KAYLKRNMTEEANLLLSHLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRK 900
            ++YL R M EEANLL   + ++  EL  +T  LF +FYL  H +DLA+K++ +G      
Sbjct: 347  ESYLNREMIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADP 406

Query: 901  SEREMY--KKKVHEFLKYFEEERDVCGAKELC 990
               + +  ++ +  FL+YFEE +DV  A++ C
Sbjct: 407  ENNKWFPTEETITMFLEYFEEVKDVDSAEKFC 438


>ref|XP_002277733.1| PREDICTED: pentatricopeptide repeat-containing protein At1g02370,
            mitochondrial [Vitis vinifera]
            gi|296089781|emb|CBI39600.3| unnamed protein product
            [Vitis vinifera]
          Length = 498

 Score =  304 bits (779), Expect = 2e-80
 Identities = 153/332 (46%), Positives = 227/332 (68%), Gaps = 3/332 (0%)
 Frame = +1

Query: 4    KSRGVEAAEKYFTDLPNSAKNKSTYGALLHCFCCEEMTEKAMMLFGKMKELNFPINSFDY 183
            K+ G+  AE YF  L  SAK   TYGALL+C+C E M +KA+ LF K+KELNF  ++  Y
Sbjct: 112  KTEGIAQAENYFNSLQESAKTNKTYGALLNCYCKENMLDKAVELFKKLKELNFVSSALSY 171

Query: 184  CSLMSLHLRLGQPEKVPLLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKM 363
             +++SL+LR+GQPEKVP L  E+++K I   L+ Y LL+NSYAS+KD ++VE V++++K 
Sbjct: 172  NNMISLYLRVGQPEKVPSLVHEMEEKDIPADLYTYNLLMNSYASVKDFEAVEQVLDKMKK 231

Query: 364  IKGITPDWAFYSNVAAIYVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVE 540
             +G+  DW  Y N+A IYV AG+ +KA   L+++E +K L+DP+AF  L+++YA    +E
Sbjct: 232  -RGVERDWFTYGNLANIYVDAGHTKKANYALQKLEQNKNLHDPEAFRMLINLYARTSNLE 290

Query: 541  EVNRVWQSLKSAFPKTSNLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLI 720
             VNR W+SLK A PK +N SYL ML  LS+L  + GL++CF EWE  CS+YD+RL+NV++
Sbjct: 291  GVNRAWESLKLAHPKINNKSYLIMLLALSKLGDVAGLEKCFKEWESGCSTYDVRLSNVML 350

Query: 721  KAYLKRNMTEEANLLLSHLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRK 900
            ++YL R + EEANLL   + ++  EL  +T  LF +FYL  H +DLA+K++ +G      
Sbjct: 351  ESYLNREIIEEANLLSESIAKRGPELKLKTLDLFMKFYLKKHQLDLAMKYLDMGASKADP 410

Query: 901  SEREMY--KKKVHEFLKYFEEERDVCGAKELC 990
               + +  ++ +  FL+YFEE +DV  A++ C
Sbjct: 411  ENNKWFPTEETITMFLEYFEEVKDVDSAEKFC 442


>ref|XP_003632411.1| PREDICTED: LOW QUALITY PROTEIN: pentatricopeptide repeat-containing
            protein At1g02370, mitochondrial-like [Vitis vinifera]
          Length = 506

 Score =  298 bits (763), Expect = 1e-78
 Identities = 153/330 (46%), Positives = 217/330 (65%), Gaps = 1/330 (0%)
 Frame = +1

Query: 4    KSRGVEAAEKYFTDLPNSAKNKSTYGALLHCFCCEEMTEKAMMLFGKMKELNFPINSFDY 183
            K++G+  AE+YF +L  SAKN  TYG LL+C+C E+M EKA+ LF KM ELNF   S  +
Sbjct: 123  KTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTF 182

Query: 184  CSLMSLHLRLGQPEKVPLLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKM 363
             +LMSLH+RLG+PE VP L +E+K++ I P  F Y +L+ SYA L D++  E V+EEIK 
Sbjct: 183  NNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKR 242

Query: 364  IKGITPDWAFYSNVAAIYVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVE 540
                   W  YSN+AA+YV A   EKAEL LK++E     +D  A+HFL+S+YA +  + 
Sbjct: 243  ENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLS 302

Query: 541  EVNRVWQSLKSAFPKTSNLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLI 720
            EVNRVW SLKSAFPKT+N+SY  MLQ L+ L  + GLK CF+EW+  C S+D+RLANV +
Sbjct: 303  EVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAV 362

Query: 721  KAYLKRNMTEEANLLLSHLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRK 900
            +A+L  +M ++A  +L   +++     +    +F   +L    +D ALK+M      ++ 
Sbjct: 363  RAFLGWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKN 422

Query: 901  SEREMYKKKVHEFLKYFEEERDVCGAKELC 990
            +E +   ++V  FLKYFEEE+DV GA++ C
Sbjct: 423  NEWQPAPERVLAFLKYFEEEKDVEGAEKFC 452


>emb|CBI36964.3| unnamed protein product [Vitis vinifera]
          Length = 526

 Score =  298 bits (763), Expect = 1e-78
 Identities = 153/330 (46%), Positives = 217/330 (65%), Gaps = 1/330 (0%)
 Frame = +1

Query: 4    KSRGVEAAEKYFTDLPNSAKNKSTYGALLHCFCCEEMTEKAMMLFGKMKELNFPINSFDY 183
            K++G+  AE+YF +L  SAKN  TYG LL+C+C E+M EKA+ LF KM ELNF   S  +
Sbjct: 162  KTKGLATAEEYFNNLSPSAKNLLTYGTLLNCYCKEKMEEKALALFEKMDELNFASTSLTF 221

Query: 184  CSLMSLHLRLGQPEKVPLLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKM 363
             +LMSLH+RLG+PE VP L +E+K++ I P  F Y +L+ SYA L D++  E V+EEIK 
Sbjct: 222  NNLMSLHMRLGKPEMVPPLVDEMKKRSISPDTFTYNILMQSYARLNDIEGAERVLEEIKR 281

Query: 364  IKGITPDWAFYSNVAAIYVAAGYHEKAELTLKEIEISK-LNDPKAFHFLLSIYASMGKVE 540
                   W  YSN+AA+YV A   EKAEL LK++E     +D  A+HFL+S+YA +  + 
Sbjct: 282  ENEDKLSWTTYSNLAAVYVNARLFEKAELALKKLEEEMGFHDRLAYHFLISLYAGINNLS 341

Query: 541  EVNRVWQSLKSAFPKTSNLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLI 720
            EVNRVW SLKSAFPKT+N+SY  MLQ L+ L  + GLK CF+EW+  C S+D+RLANV +
Sbjct: 342  EVNRVWNSLKSAFPKTNNMSYFIMLQALANLNDVDGLKICFEEWKSSCFSFDVRLANVAV 401

Query: 721  KAYLKRNMTEEANLLLSHLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRK 900
            +A+L  +M ++A  +L   +++     +    +F   +L    +D ALK+M      ++ 
Sbjct: 402  RAFLGWDMIKDAESILYEAVKRSSGPFYTALDMFMAHHLKVREIDTALKYMEAAASEVKN 461

Query: 901  SEREMYKKKVHEFLKYFEEERDVCGAKELC 990
            +E +   ++V  FLKYFEEE+DV GA++ C
Sbjct: 462  NEWQPAPERVLAFLKYFEEEKDVEGAEKFC 491


>ref|XP_002320971.1| predicted protein [Populus trichocarpa] gi|222861744|gb|EEE99286.1|
            predicted protein [Populus trichocarpa]
          Length = 473

 Score =  290 bits (742), Expect = 4e-76
 Identities = 154/330 (46%), Positives = 212/330 (64%), Gaps = 1/330 (0%)
 Frame = +1

Query: 4    KSRGVEAAEKYFTDLPNSAKNKSTYGALLHCFCCEEMTEKAMMLFGKMKELNFPINSFDY 183
            K  G+ AAE YF  L  S +N ST+GALL C+C E M+EKA+ LF KM ++ F + S  +
Sbjct: 89   KKEGIAAAENYFDGLSPSEQNHSTHGALLSCYCRELMSEKALTLFEKMDKMKFLLTSLPF 148

Query: 184  CSLMSLHLRLGQPEKVPLLHEEIKQKGIKPHLFHYKLLINSYASLKDVKSVEGVMEEIKM 363
             +L+SLHLRL QPEKV  + +E+KQKG+ P  F Y + + SY  L D + VE V++E+KM
Sbjct: 149  NNLISLHLRLDQPEKVLPIVQEMKQKGVSPCTFTYNMWMQSYGCLNDFEGVERVLDEMKM 208

Query: 364  IKGITPDWAFYSNVAAIYVAAGYHEKAELTLKEIEISKLNDPK-AFHFLLSIYASMGKVE 540
                   W  Y+N+A IYV AG+ +KAE  LK++E     D + A+HFL+++YA    + 
Sbjct: 209  DGQKNFSWTTYTNLATIYVKAGHFDKAESALKKVEEQIERDYREAYHFLITLYAGTSNLG 268

Query: 541  EVNRVWQSLKSAFPKTSNLSYLTMLQTLSRLEYMGGLKRCFDEWELHCSSYDIRLANVLI 720
            EVNRVW SLKS F  T+N+SYLTML TL++L+ + GL +CF EWE  C SYD+RLANV I
Sbjct: 269  EVNRVWNSLKSNFHTTTNVSYLTMLHTLAKLKDVEGLLKCFKEWESSCHSYDMRLANVAI 328

Query: 721  KAYLKRNMTEEANLLLSHLLEKRYELNFRTYALFTEFYLMTHSMDLALKFMGLGTPYLRK 900
            +A L+ +M EEA L+    L++   L F    +F  F+L  H +DLALK M      +++
Sbjct: 329  RACLEHDMYEEAALIFDDALKRTEGLFFNAREMFMVFFLKNHQLDLALKHMKAAFSEVKE 388

Query: 901  SEREMYKKKVHEFLKYFEEERDVCGAKELC 990
             E +   K V  F  YFE+E+DV GA+ LC
Sbjct: 389  IEWQPEPKTVSAFFAYFEDEKDVNGAERLC 418


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