BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010904
         (573 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI17453.3| unnamed protein product [Vitis vinifera]              254   9e-66
ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containi...   254   9e-66
ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containi...   234   8e-60
ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containi...   233   2e-59
ref|XP_002327681.1| predicted protein [Populus trichocarpa] gi|2...   226   2e-57

>emb|CBI17453.3| unnamed protein product [Vitis vinifera]
          Length = 451

 Score =  254 bits (648), Expect = 9e-66
 Identities = 126/179 (70%), Positives = 147/179 (82%)
 Frame = +2

Query: 35  KGLDQCSFVLAKLI*MLTKLNVDIDSYLRLIFYQVRYPNPFLYTSLIRGYSLFGPFHEVI 214
           KGL+QC FVLAKL+  LTKL+V +D Y RL+F QV YPNPFL+T+LIRGY+L GPF E +
Sbjct: 65  KGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESV 124

Query: 215 VLYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTFLIGGYECDLYVGNTLIDM 394
           +LYN MRR+GI PVSF F+AL+KAC+   +V LGRQ+H QT LIGG+  DLYVGNTLIDM
Sbjct: 125 LLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDM 184

Query: 395 YVKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAAAELFNGLSEKDMVAWTAM 571
           YVKCG    G  VFDEM +RDVISWTSLIVAYAK G+MEAA+ELF+GL  KDMVAWTAM
Sbjct: 185 YVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAM 243


>ref|XP_002268784.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Vitis vinifera]
          Length = 647

 Score =  254 bits (648), Expect = 9e-66
 Identities = 126/179 (70%), Positives = 147/179 (82%)
 Frame = +2

Query: 35  KGLDQCSFVLAKLI*MLTKLNVDIDSYLRLIFYQVRYPNPFLYTSLIRGYSLFGPFHEVI 214
           KGL+QC FVLAKL+  LTKL+V +D Y RL+F QV YPNPFL+T+LIRGY+L GPF E +
Sbjct: 65  KGLEQCCFVLAKLLRTLTKLDVPMDPYPRLVFQQVEYPNPFLWTALIRGYALQGPFMESV 124

Query: 215 VLYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTFLIGGYECDLYVGNTLIDM 394
           +LYN MRR+GI PVSF F+AL+KAC+   +V LGRQ+H QT LIGG+  DLYVGNTLIDM
Sbjct: 125 LLYNSMRRQGIGPVSFTFTALLKACSAALDVNLGRQVHTQTILIGGFGSDLYVGNTLIDM 184

Query: 395 YVKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAAAELFNGLSEKDMVAWTAM 571
           YVKCG    G  VFDEM +RDVISWTSLIVAYAK G+MEAA+ELF+GL  KDMVAWTAM
Sbjct: 185 YVKCGCLGCGHRVFDEMLDRDVISWTSLIVAYAKVGNMEAASELFDGLPMKDMVAWTAM 243



 Score = 74.7 bits (182), Expect = 1e-11
 Identities = 42/132 (31%), Positives = 71/132 (53%), Gaps = 1/132 (0%)
 Frame = +2

Query: 161 YTSLIRGYSLFGPFHEVIVLYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTF 340
           +T+++ GY+      E + ++ RM+  G++        ++ ACA LG  +    +     
Sbjct: 240 WTAMVTGYAQNARPREALEVFERMQAAGVKTDEVTLVGVISACAQLGAAKYANWVRDVAE 299

Query: 341 LIG-GYECDLYVGNTLIDMYVKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAA 517
             G G   ++ VG+ LIDMY KCG  E    VF+ M ER+V S++S+IV +A  G   AA
Sbjct: 300 QSGFGPTSNVVVGSALIDMYAKCGSVEDAYKVFERMEERNVYSYSSMIVGFAMHGLAGAA 359

Query: 518 AELFNGLSEKDM 553
            ELF+ + + ++
Sbjct: 360 MELFDEMLKTEI 371


>ref|XP_004169636.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  234 bits (597), Expect = 8e-60
 Identities = 115/178 (64%), Positives = 138/178 (77%)
 Frame = +2

Query: 38  GLDQCSFVLAKLI*MLTKLNVDIDSYLRLIFYQVRYPNPFLYTSLIRGYSLFGPFHEVIV 217
           GL QCS+VL KLI MLTK++V + SY  L+F QV YPNPFL+T++IRGY+L G   E   
Sbjct: 69  GLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTN 128

Query: 218 LYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTFLIGGYECDLYVGNTLIDMY 397
            Y RMRR+G+ PVSF FSAL KAC    N++LG+Q+HAQT LIGG+  DLYVGN++ID+Y
Sbjct: 129 FYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLY 188

Query: 398 VKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAAAELFNGLSEKDMVAWTAM 571
           VKCGF    R VFDEM ERDV+SWT LIVAYAK GDME+A+ LF+ L  KDMVAWTAM
Sbjct: 189 VKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPSKDMVAWTAM 246



 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
 Frame = +2

Query: 161 YTSLIRGYSLFGPFHEVIVLYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTF 340
           +T+++ GY+  G   E +  + +M+  G+       + ++ ACA LG V+    I     
Sbjct: 243 WTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAE 302

Query: 341 LIG-GYECDLYVGNTLIDMYVKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAA 517
             G G   ++ VG+ LIDMY KCG  +    VF+ M ER+V S++S+I+ YA  G   +A
Sbjct: 303 RSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSA 362

Query: 518 AELFNGLSEKDM 553
            +LF+ + + ++
Sbjct: 363 LQLFHDMLKTEI 374



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
 Frame = +2

Query: 71  LI*MLTKLNVDIDSYLRLIFYQVRYPNPFLYTSLIRGYSLFGPFHEVIVLYNRMRREGIR 250
           LI M +K     ++Y   +F  ++  N F Y+S+I GY++ G  H  + L++ M +  IR
Sbjct: 318 LIDMYSKCGSPDEAYK--VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIR 375

Query: 251 PVSFIFSALVKACAGLGNVELGRQIHAQTFLIGGYECDLYVGNTLIDMYVKCGFFESGRC 430
           P    F  ++ AC+  G VE GRQ+ A+     G          ++D+  + G  E    
Sbjct: 376 PNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALD 435

Query: 431 VFDEMP-ERDVISWTSLIVAYAKSGDME----AAAELF 529
           +   MP E +   W +L+ A    G+ +    AA ELF
Sbjct: 436 LVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473


>ref|XP_004146494.1| PREDICTED: pentatricopeptide repeat-containing protein
           At5g44230-like [Cucumis sativus]
          Length = 650

 Score =  233 bits (594), Expect = 2e-59
 Identities = 115/178 (64%), Positives = 138/178 (77%)
 Frame = +2

Query: 38  GLDQCSFVLAKLI*MLTKLNVDIDSYLRLIFYQVRYPNPFLYTSLIRGYSLFGPFHEVIV 217
           GL QCS+VL KLI MLTK++V + SY  L+F QV YPNPFL+T++IRGY+L G   E   
Sbjct: 69  GLSQCSYVLTKLIRMLTKVDVPMGSYPLLVFGQVNYPNPFLWTAMIRGYALQGLLSESTN 128

Query: 218 LYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTFLIGGYECDLYVGNTLIDMY 397
            Y RMRR+G+ PVSF FSAL KAC    N++LG+Q+HAQT LIGG+  DLYVGN++ID+Y
Sbjct: 129 FYTRMRRDGVGPVSFTFSALFKACGAALNMDLGKQVHAQTILIGGFASDLYVGNSMIDLY 188

Query: 398 VKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAAAELFNGLSEKDMVAWTAM 571
           VKCGF    R VFDEM ERDV+SWT LIVAYAK GDME+A+ LF+ L  KDMVAWTAM
Sbjct: 189 VKCGFLGCARKVFDEMSERDVVSWTELIVAYAKYGDMESASGLFDDLPLKDMVAWTAM 246



 Score = 70.5 bits (171), Expect = 2e-10
 Identities = 41/132 (31%), Positives = 72/132 (54%), Gaps = 1/132 (0%)
 Frame = +2

Query: 161 YTSLIRGYSLFGPFHEVIVLYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTF 340
           +T+++ GY+  G   E +  + +M+  G+       + ++ ACA LG V+    I     
Sbjct: 243 WTAMVTGYAQNGRPKEALEYFQKMQDVGMETDEVTLAGVISACAQLGAVKHANWIRDIAE 302

Query: 341 LIG-GYECDLYVGNTLIDMYVKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAA 517
             G G   ++ VG+ LIDMY KCG  +    VF+ M ER+V S++S+I+ YA  G   +A
Sbjct: 303 RSGFGPSGNVVVGSALIDMYSKCGSPDEAYKVFEVMKERNVFSYSSMILGYAMHGRAHSA 362

Query: 518 AELFNGLSEKDM 553
            +LF+ + + ++
Sbjct: 363 LQLFHDMLKTEI 374



 Score = 55.5 bits (132), Expect = 6e-06
 Identities = 46/158 (29%), Positives = 75/158 (47%), Gaps = 5/158 (3%)
 Frame = +2

Query: 71  LI*MLTKLNVDIDSYLRLIFYQVRYPNPFLYTSLIRGYSLFGPFHEVIVLYNRMRREGIR 250
           LI M +K     ++Y   +F  ++  N F Y+S+I GY++ G  H  + L++ M +  IR
Sbjct: 318 LIDMYSKCGSPDEAYK--VFEVMKERNVFSYSSMILGYAMHGRAHSALQLFHDMLKTEIR 375

Query: 251 PVSFIFSALVKACAGLGNVELGRQIHAQTFLIGGYECDLYVGNTLIDMYVKCGFFESGRC 430
           P    F  ++ AC+  G VE GRQ+ A+     G          ++D+  + G  E    
Sbjct: 376 PNKVTFIGILSACSHAGLVEQGRQLFAKMEKFFGVAPSPDHYACMVDLLGRAGCLEEALD 435

Query: 431 VFDEMP-ERDVISWTSLIVAYAKSGDME----AAAELF 529
           +   MP E +   W +L+ A    G+ +    AA ELF
Sbjct: 436 LVKTMPMEPNGGVWGALLGACRIHGNPDIAQIAANELF 473


>ref|XP_002327681.1| predicted protein [Populus trichocarpa] gi|222836766|gb|EEE75159.1|
           predicted protein [Populus trichocarpa]
          Length = 654

 Score =  226 bits (576), Expect = 2e-57
 Identities = 116/186 (62%), Positives = 137/186 (73%)
 Frame = +2

Query: 14  ARITVS*KGLDQCSFVLAKLI*MLTKLNVDIDSYLRLIFYQVRYPNPFLYTSLIRGYSLF 193
           ARI ++  GLDQ  +VLAKLI  LTKLN+ +D Y   IF QV YPNPFLY +LIRGY + 
Sbjct: 67  ARILLN--GLDQSCYVLAKLIRTLTKLNIPVDPYPLSIFNQVNYPNPFLYNALIRGYLIE 124

Query: 194 GPFHEVIVLYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIHAQTFLIGGYECDLYV 373
               E    Y+ MR+EG+ PVSF F+AL KAC    +V LGRQIH QT L+GG+  DL+V
Sbjct: 125 ERLKESTEFYSLMRKEGVVPVSFTFTALFKACGAKMDVGLGRQIHGQTILVGGFGEDLHV 184

Query: 374 GNTLIDMYVKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEAAAELFNGLSEKDM 553
           GN++IDMY+KCGF E GR VFDEMP RDVISWT LI AY KSG+ME+A ELF+GL  KDM
Sbjct: 185 GNSMIDMYIKCGFLECGRKVFDEMPNRDVISWTELISAYVKSGNMESAGELFDGLPVKDM 244

Query: 554 VAWTAM 571
           VAWT M
Sbjct: 245 VAWTVM 250



 Score = 63.9 bits (154), Expect = 2e-08
 Identities = 39/133 (29%), Positives = 68/133 (51%), Gaps = 2/133 (1%)
 Frame = +2

Query: 161 YTSLIRGYSLFGPFHEVIVLYNRMRREGIRPVSFIFSALVKACAGLGNVELGRQIH--AQ 334
           +T ++ G++      E I+ + +M+  G+         ++ ACA LG  +    I   A+
Sbjct: 247 WTVMVSGFAQNAKPREAIMFFEKMQEFGVETDEITLIGVISACAQLGAAKYADWIRDVAE 306

Query: 335 TFLIGGYECDLYVGNTLIDMYVKCGFFESGRCVFDEMPERDVISWTSLIVAYAKSGDMEA 514
               GG    + VG+ LIDMY KCG       VF  M ER+V S++S+I+ +A  G +  
Sbjct: 307 KSEFGGKH-SVVVGSALIDMYSKCGSVGDAYRVFQGMKERNVYSYSSMILGFAMHGRVHD 365

Query: 515 AAELFNGLSEKDM 553
           A +LF+ + + ++
Sbjct: 366 AMKLFDEMVKTEI 378