BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010895
         (1043 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257...   165   1e-38
ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, puta...   111   3e-22
ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|2...   108   3e-21
emb|CBI27747.3| unnamed protein product [Vitis vinifera]              101   3e-19
gb|AFW71893.1| putative HLH DNA-binding domain superfamily prote...    67   9e-09

>ref|XP_002277344.2| PREDICTED: uncharacterized protein LOC100257707 [Vitis vinifera]
          Length = 536

 Score =  165 bits (418), Expect = 1e-38
 Identities = 118/334 (35%), Positives = 168/334 (50%), Gaps = 14/334 (4%)
 Frame = +2

Query: 83   MDEFLDQFLSSSPWSDVKAPERSSWI------GNGLLFDTMGAYGEDEENITQSLIPSSL 244
            MDE+LD   SS+ WSDV   E SSWI       NG+L D++G Y  D++N    +  S+L
Sbjct: 1    MDEYLDHLFSSTSWSDVNVKEGSSWICGEPSQTNGMLSDSIGIYEGDKKNSPVGMTNSNL 60

Query: 245  IVDNLITQKTSDFA-SEDSSFDLEKSLRSGESKPREGGTGHGSKLSLLGVLDGNPKPSYL 421
            +++ L+TQ TS      +S   L K L   E+  ++         SL G ++G+ +  Y+
Sbjct: 61   MIEGLVTQDTSSIVLGGESDHGLGKGLLLEEAPRQQDLQNTEGNSSLNGAVNGSSEVGYV 120

Query: 422  DMQSNTSSTLGA---LNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHC 592
             +Q NT ++      L  P+   ++   + SS    E   VG N +E S+    + +   
Sbjct: 121  GLQLNTPTSTPCSLDLGSPKQLSLIGGMSRSSRPFTELDHVGCNGNEPSDFQRSVGNFQA 180

Query: 593  RSSVPQLWP-PSYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFNDTIQQ-GNL 766
               +PQLW  PSY G SSL PV+G+ K QGFGLQ +YV+ +  ++ ++Y  D I Q  N+
Sbjct: 181  LPPIPQLWSQPSYGGGSSLSPVMGEYKMQGFGLQGEYVDNEMDIMRNRYVGDEILQLDNI 240

Query: 767  PASLP--EQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQ 940
             +++P   + E + H     A G           H  M  S L              +PQ
Sbjct: 241  SSAIPIKGKEEQHTHPFSPSAVGP----------HMTMTASGLQS------------LPQ 278

Query: 941  LPHTPNTASGDCNGAAKHRVRARRGQATDPHSIA 1042
               T  TASG CNG  K RVRARRGQATDPHSIA
Sbjct: 279  T--TVGTASGGCNGTGKPRVRARRGQATDPHSIA 310


>ref|XP_002516201.1| DNA-directed RNA polymerase beta chain, putative [Ricinus communis]
            gi|223544687|gb|EEF46203.1| DNA-directed RNA polymerase
            beta chain, putative [Ricinus communis]
          Length = 592

 Score =  111 bits (278), Expect = 3e-22
 Identities = 109/335 (32%), Positives = 163/335 (48%), Gaps = 14/335 (4%)
 Frame = +2

Query: 80   VMDEFLDQFLSSSPWSDVKAPERSSWIG------NGLLFDTMGAYGEDEENITQSLIPSS 241
            VMDE++D+  SSSPW+D  A ERS W        N  +  ++  +  D+ N   S+  S 
Sbjct: 58   VMDEYIDRLFSSSPWADGDAKERSCWDYSETGQLNVSVSTSLRLHENDKGNSLLSVTSSE 117

Query: 242  LIVDNLITQKTSDFASE-DSSFDLEKSLRSGESKPREGGTGHGSKLSLLGVLDGNPKPSY 418
              +D L  Q T     + +S + ++K L SG+++ ++ G       S +  ++G+ K   
Sbjct: 118  QNIDCLPAQDTPSLGLDSESDYVVDKGLFSGKAQSQKEGQNCNHDPSPM--INGSLKMKN 175

Query: 419  LDMQSNTS-STLGA--LNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSH 589
            + +Q +T+  TL +  L+  +  PVL D  +  S   ++   G NDS   E      D  
Sbjct: 176  MGLQYDTALPTLNSVGLSYSKQLPVLDDLTSPLSFT-KANRAGLNDSARFEYQRSFKDVQ 234

Query: 590  CRSSVPQLWPP-SYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFN--DTIQQG 760
              SS+ QLWP  S+  VSSL   +GQD  Q F LQ    + D   LG +Y +  + +Q  
Sbjct: 235  NPSSMTQLWPSTSFEDVSSLSAAMGQDTTQQFDLQGNLGD-DLDFLGRRYISMDNILQLD 293

Query: 761  NLPASLPEQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQ 940
             L AS+  +++ N         G+  PL R   + S M ++  T G           +  
Sbjct: 294  KLSASVVSKDKEN-------LQGY--PLSRFT-VGSNMTMT--TNG-----------VSY 330

Query: 941  LPHTPNTA-SGDCNGAAKHRVRARRGQATDPHSIA 1042
            L  T +TA +  CNG  K RVRARRGQATDPHSIA
Sbjct: 331  LSQTASTAPAASCNGTGKPRVRARRGQATDPHSIA 365


>ref|XP_002326150.1| predicted protein [Populus trichocarpa] gi|222833343|gb|EEE71820.1|
            predicted protein [Populus trichocarpa]
          Length = 456

 Score =  108 bits (269), Expect = 3e-21
 Identities = 89/277 (32%), Positives = 135/277 (48%), Gaps = 5/277 (1%)
 Frame = +2

Query: 227  LIPSSLIVDNLITQKTSDFA-SEDSSFDLEKSLRSGESKPREGGTGHGSKLSLLGVLDGN 403
            +I S+  V++L TQ TS      +S + ++K L S +++ +          S  G+  GN
Sbjct: 1    MISSNQSVESLATQDTSSVVLGSESDYAVDKVLISEQARLQNDCQNCNGNPSPDGMARGN 60

Query: 404  PKPSYLDMQSN-TSSTLGALNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPII 580
             K     +Q N    TL +LN P   P++ D  +  S   E+ + G N  E SE    + 
Sbjct: 61   LKFGNTGLQCNGILPTLSSLNYPNQLPIVGDLTSYLSFS-EASNAGCNGREQSEYLRSLK 119

Query: 581  DSHCRSSVPQLWPP-SYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFN-DTIQ 754
            +    SS+PQLWP  SY GVSSL P++GQD+ +G GL+   ++ D  ++G  Y   D I 
Sbjct: 120  NLQNLSSIPQLWPSQSYEGVSSLPPLMGQDRIEGSGLRGGNLDDDMHIMGKGYMGMDEIL 179

Query: 755  QGNLPASLPEQNEMNNHYMCSFAAGHQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQTPI 934
            + +  ++ P      +   C F++G        AE +  M ++ L+              
Sbjct: 180  RLDKLSASPTTEGKEDLQSCPFSSG-------IAEPNVNMSMNQLSS------------- 219

Query: 935  PQLPHTPNTASGD-CNGAAKHRVRARRGQATDPHSIA 1042
              +P T + A  + CNG  K RVRARRG ATDPHSIA
Sbjct: 220  --MPQTTSAAPVEGCNGTGKTRVRARRGHATDPHSIA 254


>emb|CBI27747.3| unnamed protein product [Vitis vinifera]
          Length = 389

 Score =  101 bits (252), Expect = 3e-19
 Identities = 72/186 (38%), Positives = 94/186 (50%), Gaps = 4/186 (2%)
 Frame = +2

Query: 497  ANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRSSVPQLWP-PSYRGVSSLFPVVGQDKP 673
            + SS    E   VG N +E S+    + +      +PQLW  PSY G SSL PV+G+ K 
Sbjct: 2    SRSSRPFTELDHVGCNGNEPSDFQRSVGNFQALPPIPQLWSQPSYGGGSSLSPVMGEYKM 61

Query: 674  QGFGLQRQYVETDAAVLGSKYFNDTIQQ-GNLPASLP--EQNEMNNHYMCSFAAGHQIPL 844
            QGFGLQ +YV+ +  ++ ++Y  D I Q  N+ +++P   + E + H     A G     
Sbjct: 62   QGFGLQGEYVDNEMDIMRNRYVGDEILQLDNISSAIPIKGKEEQHTHPFSPSAVGP---- 117

Query: 845  GRTAEIHSQMQLSYLTGGNSIKHYADQTPIPQLPHTPNTASGDCNGAAKHRVRARRGQAT 1024
                  H  M  S L              +PQ   T  TASG CNG  K RVRARRGQAT
Sbjct: 118  ------HMTMTASGLQS------------LPQT--TVGTASGGCNGTGKPRVRARRGQAT 157

Query: 1025 DPHSIA 1042
            DPHSIA
Sbjct: 158  DPHSIA 163


>gb|AFW71893.1| putative HLH DNA-binding domain superfamily protein [Zea mays]
          Length = 489

 Score = 66.6 bits (161), Expect = 9e-09
 Identities = 70/226 (30%), Positives = 94/226 (41%), Gaps = 18/226 (7%)
 Frame = +2

Query: 419  LDMQSNTSSTLGALNQPEITPVLVDPANSSSVQPESGSVGSNDSELSEIHPPIIDSHCRS 598
            L  + N++   G L      P  V  A+S+ V   S +  S  SE S + PP        
Sbjct: 95   LGFEVNSALVAGMLGPVLSAPCAVSLADSAPVVCSSSNDSSGGSEQSGLPPPP-RFLVLG 153

Query: 599  SVPQLWPPSYRGVSSLFPVVGQDKPQGFGLQRQYVETDAAVLGSKYFNDTI---QQGNLP 769
              P  WP ++  +SSL    G++  + FG     V  +  V GS    D     Q GN  
Sbjct: 154  EQPASWPSAFPRISSL---AGEETSRSFGFGA--VSDNDLVRGSSCVADVNKYPQIGNAR 208

Query: 770  ASLPEQNEMNNHYMCSFAAG--------HQIPLGRTAEIHSQMQLSYLTGGNSIKHYADQ 925
              + +  E N   M SFA G         Q  L     ++S  QLS      + +  +++
Sbjct: 209  LHVEDDVEFNTGKMLSFAPGLDFGDLQLSQKELSGLRHLNSGQQLSSFDATRNPEQSSNE 268

Query: 926  TP-------IPQLPHTPNTASGDCNGAAKHRVRARRGQATDPHSIA 1042
                      P      N A+G  NGA K RVRARRGQATDPHSIA
Sbjct: 269  ASGGGTGLNAPPFMVPANGAAG--NGAPKPRVRARRGQATDPHSIA 312