BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010870
         (1433 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]           561   e-157
gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]         553   e-155
sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly...   515   e-144
gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]            511   e-142
gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]      499   e-139

>dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum]
          Length = 1338

 Score =  561 bits (1447), Expect = e-157
 Identities = 290/481 (60%), Positives = 356/481 (74%), Gaps = 4/481 (0%)
 Frame = +1

Query: 1    YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAFTNDLVDSEPEVPTVER 180
            YG +  GYK YDP+ KK++RSRDVVF+EDQTI D ++ EK    T+D  + E     V R
Sbjct: 676  YGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDKVEKS---TDDSAEFELPPTVVPR 732

Query: 181  AEGIENAENHEFEAH---DENPIAH-DGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGA 348
              G ++ ++++ EA    +E+ +A  +G E  G +DADE  +P P      P        
Sbjct: 733  QVG-DDVQDNQPEAPGLPNEDELADTEGNEDNGDDDADEEDQPQPPILNNPPYHT----- 786

Query: 349  RRSDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYE 528
             RS R    STRY PH YVLL+DGGEP  +++A++   KEKW++AM DE+ SLH+N T+E
Sbjct: 787  -RSGRVVQQSTRYSPHEYVLLTDGGEPDSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFE 845

Query: 529  LVEKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSI 708
            LV+ P G++ LKNKW++K+KH+E+N  PR KARLVVKGF QRKGIDFDEIFSPVVKMTSI
Sbjct: 846  LVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSI 905

Query: 709  RVVLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLK 888
            R VLG+AAS+NLEVEQ+DVKTAFLHGDLEE++YM+QP+GF+ KGKE  VC+L KSLYGLK
Sbjct: 906  RTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYVCRLRKSLYGLK 965

Query: 889  QAPRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXX 1068
            QAPRQWY KF+S M + GYKK+ SDHC F Q+F D DFI+LLLYVDDMLIVG        
Sbjct: 966  QAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINS 1025

Query: 1069 XXXXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCP 1248
                    F MKDLG AKQILGMRI RDR++ KLWLSQE YIEKVL+RFNM++ K VSCP
Sbjct: 1026 LKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCP 1085

Query: 1249 LGGQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPG 1428
            L   FR++ +  P  + E+ +ME+IPYASAVGSLMYAMVCTRPDIA AVGVVSRFLSNPG
Sbjct: 1086 LANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPG 1145

Query: 1429 K 1431
            K
Sbjct: 1146 K 1146


>gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas]
          Length = 1415

 Score =  553 bits (1425), Expect = e-155
 Identities = 280/480 (58%), Positives = 354/480 (73%), Gaps = 3/480 (0%)
 Frame = +1

Query: 1    YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAF-TNDLVDSEPEVP--T 171
            YG ++FGY+LYDP+ KK++RSRDVVF E+QTI D ++ ++ ++  +  LVD EP     T
Sbjct: 674  YGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPESRDSGSLVDIEPVSRRYT 733

Query: 172  VERAEGIENAENHEFEAHDENPIAHDGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGAR 351
             +  E  EN +N +       P+     + +   D D   +    Q +  P + P D  R
Sbjct: 734  DDVDEVQENVQNGD-------PVPDYQGDTV---DVDGHADDVVHQEQEVPSQVPVDLPR 783

Query: 352  RSDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYEL 531
            RSDRER  STRY P  YVLL+DGGEP  Y++A+E   K +W +AM +EM+SL+ N T+EL
Sbjct: 784  RSDRERRPSTRYSPSQYVLLTDGGEPESYEEAMESDQKRQWFEAMQEEMNSLYVNDTFEL 843

Query: 532  VEKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSIR 711
            V+ P  RK LKN+W+Y+VKHEE    PR KARLVVKGF Q+KGIDFDEIFSPVVK +SIR
Sbjct: 844  VKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIR 903

Query: 712  VVLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQ 891
            VVLG+AA +++E+EQ+DVKTAFLHGDL+E++YM+QPEGF+VKGKE  VC+L KSLYGLKQ
Sbjct: 904  VVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQ 963

Query: 892  APRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXX 1071
            APRQWY KF S M K GYKK++SDHC FV R+ D DF++LLLYVDDMLIVG         
Sbjct: 964  APRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQEL 1023

Query: 1072 XXXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPL 1251
                  SF MKD+G AKQILGM+I RDR++ KLWLSQE YIEKVL+RF+M++AKPVS PL
Sbjct: 1024 KQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEKYIEKVLERFHMNEAKPVSTPL 1083

Query: 1252 GGQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGK 1431
               F++ K+ CP  E E+ +M+++PY+SAVGSLMYAMVCTRPDIA AVGVVSRFLSNPG+
Sbjct: 1084 DMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGR 1143


>sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT
            1-94; Includes: RecName: Full=Protease; Includes:
            RecName: Full=Reverse transcriptase; Includes: RecName:
            Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed
            protein product [Nicotiana tabacum]
          Length = 1328

 Score =  515 bits (1327), Expect = e-144
 Identities = 268/479 (55%), Positives = 337/479 (70%), Gaps = 2/479 (0%)
 Frame = +1

Query: 1    YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAFTNDLVDSEPEVPTVER 180
            YGDE+FGY+L+DP+ KKVIRSRDVVF E +     +  EK++   N ++ +   +P+   
Sbjct: 679  YGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVK---NGIIPNFVTIPSTSN 735

Query: 181  AEGIENAENHEFEAHDENP--IAHDGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGARR 354
                  +   E     E P  +   G +   +++  E  E P +  E H P       RR
Sbjct: 736  NPTSAESTTDEVSEQGEQPGEVIEQGEQ---LDEGVEEVEHPTQGEEQHQP------LRR 786

Query: 355  SDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYELV 534
            S+R R+ S RYP   YVL+SD  EP   ++ L   +K + +KAM +EM+SL KN TY+LV
Sbjct: 787  SERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLV 846

Query: 535  EKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSIRV 714
            E P G++ LK KW++K+K + +    R+KARLVVKGF Q+KGIDFDEIFSPVVKMTSIR 
Sbjct: 847  ELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRT 906

Query: 715  VLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQA 894
            +L +AAS++LEVEQLDVKTAFLHGDLEE++YM+QPEGFEV GK+H+VCKL KSLYGLKQA
Sbjct: 907  ILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQA 966

Query: 895  PRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXXX 1074
            PRQWY+KFDSFM  Q Y K+ SD C + +RF + +FI+LLLYVDDMLIVG          
Sbjct: 967  PRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLK 1026

Query: 1075 XXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLG 1254
                 SF+MKDLG A+QILGM+I R+R S KLWLSQE YIE+VL+RFNM  AKPVS PL 
Sbjct: 1027 GDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLA 1086

Query: 1255 GQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGK 1431
            G  +++K+MCP    E+  M K+PY+SAVGSLMYAMVCTRPDIA AVGVVSRFL NPGK
Sbjct: 1087 GHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGK 1145


>gb|AAW22873.1| putative polyprotein [Solanum lycopersicum]
          Length = 687

 Score =  511 bits (1315), Expect = e-142
 Identities = 267/485 (55%), Positives = 337/485 (69%), Gaps = 8/485 (1%)
 Frame = +1

Query: 1    YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKL--QAFTNDLVDSE-PEVPT 171
            YGDE+FGY+LYDP  +KV+RSRDVVF E +        +K     F++D++D   P V  
Sbjct: 23   YGDEEFGYRLYDPAKQKVVRSRDVVFYEHEMSFHLLGADKTYYSNFSHDVIDMPMPHVSA 82

Query: 172  VE-RAEGIENAENHEFEAHDENPIAH---DGIEPIGIEDA-DEMHEPPPEQAEVHPPEAP 336
             + +  G    + HE  AH+ + I     D + P   ++A D  H     Q E   P   
Sbjct: 83   SDDQLTGDAPEDGHEI-AHEHDHIEEVQPDVVVPQPDDEAVDVQHGESSNQGEKSSPHVE 141

Query: 337  ADGARRSDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKN 516
                R+S R R  S  YP   Y+L++D GEP   Q+ L  +DK+ WLKAM ++MDSL KN
Sbjct: 142  EPTLRKSTRVRQPSRLYPSSEYILITDEGEPESLQEVLSHSDKDHWLKAMQEDMDSLKKN 201

Query: 517  HTYELVEKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVK 696
             TY+LV+ P G+KVLKN+W++K K ++ N   + KARLVVKG  Q+KGIDFDEIF+PVVK
Sbjct: 202  ETYDLVKPPKGKKVLKNRWLFKNK-KDGNKLVKRKARLVVKGCHQKKGIDFDEIFAPVVK 260

Query: 697  MTSIRVVLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSL 876
            MTSIR++LG+A  +NLE+EQLDVKTAFLHGDL E++YM+QPEGFEVKGKE+ VCKL KSL
Sbjct: 261  MTSIRMILGLATCLNLELEQLDVKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKKSL 320

Query: 877  YGLKQAPRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXX 1056
            YGLKQAPRQWY KFDSFM    YK++ +D C + ++F +G+FI+L LYVDDMLIVG    
Sbjct: 321  YGLKQAPRQWYHKFDSFMSNNEYKRTTADPCVYFRKFSEGNFIILCLYVDDMLIVGQDVE 380

Query: 1057 XXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKP 1236
                       SF+MKDLG AKQILGM I RDRK+GKLWLSQE+YIE+VL+RFNM  AKP
Sbjct: 381  MICRLKEDLSKSFDMKDLGPAKQILGMEIARDRKAGKLWLSQENYIERVLERFNMKNAKP 440

Query: 1237 VSCPLGGQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFL 1416
            V+ PL   F+++K  CP  E E+  M  IPY+S VGSLMYAMVCTRPDIA AVG+VSR+L
Sbjct: 441  VNTPLAAHFKLSKRCCPTTEKEKESMSHIPYSSVVGSLMYAMVCTRPDIAHAVGLVSRYL 500

Query: 1417 SNPGK 1431
            +NP K
Sbjct: 501  ANPSK 505


>gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris]
          Length = 1556

 Score =  499 bits (1284), Expect = e-139
 Identities = 257/472 (54%), Positives = 337/472 (71%)
 Frame = +1

Query: 16   FGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAFTNDLVDSEPEVPTVERAEGIE 195
            FG K Y  ++KK +RSRDV F+EDQTI D ++ EK+ + T++ + +   V + E+ + ++
Sbjct: 643  FGCKAY--VHKKAVRSRDVKFMEDQTIEDIDKTEKITSETDNRLSNVDPVLSDEQHDDVD 700

Query: 196  NAENHEFEAHDENPIAHDGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGARRSDRERLA 375
            + +  +         A D    + I+D++E H    ++     PE P    RR       
Sbjct: 701  DQQLGD---------AFD----VPIDDSEEEHGMSQDEDLGDAPEPPQVQIRR------- 740

Query: 376  STRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYELVEKPTGRK 555
               YP   YV L+D GEP  Y +A+E  +K+KWL AM DEM SLH NHT++LV+ P  +K
Sbjct: 741  ---YPSDDYVTLTDEGEPECYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKK 797

Query: 556  VLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSIRVVLGMAAS 735
             L+N+WIY+VK E N+  PR+KARLVVKGF QRKGIDF+EIFSPVVKM+SIR+VL +AA+
Sbjct: 798  ALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAAT 857

Query: 736  MNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQAPRQWYIK 915
            ++LEVEQ+DVKTAFLHGDLEE++YM QP+GF V+GKE  VC+L KSLYGLKQAPRQWY K
Sbjct: 858  LDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKK 917

Query: 916  FDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSF 1095
            F+S M +QGYKK+ SDHC FV++F + DFI+LLLYVDD+LIVG               SF
Sbjct: 918  FESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESF 977

Query: 1096 EMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLGGQFRMTK 1275
             MKD+G AKQILG+RI RDR+  KLWLSQE+Y+++VL+RF M+ AK VS PL   F+++ 
Sbjct: 978  AMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLST 1037

Query: 1276 EMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGK 1431
            +  P  E+E+S M++IPYASAVGSLMYAMVCTRPDIA  VG VSRF+SNPG+
Sbjct: 1038 KQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGR 1089