BLASTX nr result
ID: Coptis25_contig00010870
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00010870 (1433 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] 561 e-157 gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] 553 e-155 sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol poly... 515 e-144 gb|AAW22873.1| putative polyprotein [Solanum lycopersicum] 511 e-142 gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] 499 e-139 >dbj|BAA11674.1| unnamed protein product [Nicotiana tabacum] Length = 1338 Score = 561 bits (1447), Expect = e-157 Identities = 290/481 (60%), Positives = 356/481 (74%), Gaps = 4/481 (0%) Frame = +1 Query: 1 YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAFTNDLVDSEPEVPTVER 180 YG + GYK YDP+ KK++RSRDVVF+EDQTI D ++ EK T+D + E V R Sbjct: 676 YGQDMLGYKFYDPVEKKLVRSRDVVFVEDQTIEDIDKVEKS---TDDSAEFELPPTVVPR 732 Query: 181 AEGIENAENHEFEAH---DENPIAH-DGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGA 348 G ++ ++++ EA +E+ +A +G E G +DADE +P P P Sbjct: 733 QVG-DDVQDNQPEAPGLPNEDELADTEGNEDNGDDDADEEDQPQPPILNNPPYHT----- 786 Query: 349 RRSDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYE 528 RS R STRY PH YVLL+DGGEP +++A++ KEKW++AM DE+ SLH+N T+E Sbjct: 787 -RSGRVVQQSTRYSPHEYVLLTDGGEPDSFEEAIDDEHKEKWIEAMQDEIKSLHENKTFE 845 Query: 529 LVEKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSI 708 LV+ P G++ LKNKW++K+KH+E+N PR KARLVVKGF QRKGIDFDEIFSPVVKMTSI Sbjct: 846 LVKLPKGKRALKNKWVFKMKHDEHNSLPRFKARLVVKGFNQRKGIDFDEIFSPVVKMTSI 905 Query: 709 RVVLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLK 888 R VLG+AAS+NLEVEQ+DVKTAFLHGDLEE++YM+QP+GF+ KGKE VC+L KSLYGLK Sbjct: 906 RTVLGLAASLNLEVEQMDVKTAFLHGDLEEEIYMEQPDGFQQKGKEDYVCRLRKSLYGLK 965 Query: 889 QAPRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXX 1068 QAPRQWY KF+S M + GYKK+ SDHC F Q+F D DFI+LLLYVDDMLIVG Sbjct: 966 QAPRQWYKKFESVMGQHGYKKTTSDHCVFAQKFSDDDFIILLLYVDDMLIVGRNVSRINS 1025 Query: 1069 XXXXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCP 1248 F MKDLG AKQILGMRI RDR++ KLWLSQE YIEKVL+RFNM++ K VSCP Sbjct: 1026 LKEQLSKFFAMKDLGPAKQILGMRIMRDREAKKLWLSQEKYIEKVLQRFNMEKTKAVSCP 1085 Query: 1249 LGGQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPG 1428 L FR++ + P + E+ +ME+IPYASAVGSLMYAMVCTRPDIA AVGVVSRFLSNPG Sbjct: 1086 LANHFRLSTKQSPSTDDERRKMERIPYASAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPG 1145 Query: 1429 K 1431 K Sbjct: 1146 K 1146 >gb|AAV88069.1| hypothetical retrotransposon [Ipomoea batatas] Length = 1415 Score = 553 bits (1425), Expect = e-155 Identities = 280/480 (58%), Positives = 354/480 (73%), Gaps = 3/480 (0%) Frame = +1 Query: 1 YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAF-TNDLVDSEPEVP--T 171 YG ++FGY+LYDP+ KK++RSRDVVF E+QTI D ++ ++ ++ + LVD EP T Sbjct: 674 YGFDEFGYRLYDPVEKKLVRSRDVVFFENQTIEDIDKVKQPESRDSGSLVDIEPVSRRYT 733 Query: 172 VERAEGIENAENHEFEAHDENPIAHDGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGAR 351 + E EN +N + P+ + + D D + Q + P + P D R Sbjct: 734 DDVDEVQENVQNGD-------PVPDYQGDTV---DVDGHADDVVHQEQEVPSQVPVDLPR 783 Query: 352 RSDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYEL 531 RSDRER STRY P YVLL+DGGEP Y++A+E K +W +AM +EM+SL+ N T+EL Sbjct: 784 RSDRERRPSTRYSPSQYVLLTDGGEPESYEEAMESDQKRQWFEAMQEEMNSLYVNDTFEL 843 Query: 532 VEKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSIR 711 V+ P RK LKN+W+Y+VKHEE PR KARLVVKGF Q+KGIDFDEIFSPVVK +SIR Sbjct: 844 VKAPKNRKALKNRWVYRVKHEEGTSVPRFKARLVVKGFSQKKGIDFDEIFSPVVKFSSIR 903 Query: 712 VVLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQ 891 VVLG+AA +++E+EQ+DVKTAFLHGDL+E++YM+QPEGF+VKGKE VC+L KSLYGLKQ Sbjct: 904 VVLGLAARLDIEIEQMDVKTAFLHGDLDEEIYMEQPEGFKVKGKEDYVCRLKKSLYGLKQ 963 Query: 892 APRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXX 1071 APRQWY KF S M K GYKK++SDHC FV R+ D DF++LLLYVDDMLIVG Sbjct: 964 APRQWYKKFTSVMSKHGYKKTSSDHCVFVNRYSDDDFVILLLYVDDMLIVGRNASRIQEL 1023 Query: 1072 XXXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPL 1251 SF MKD+G AKQILGM+I RDR++ KLWLSQE YIEKVL+RF+M++AKPVS PL Sbjct: 1024 KQELSKSFSMKDMGPAKQILGMKIIRDRQNKKLWLSQEKYIEKVLERFHMNEAKPVSTPL 1083 Query: 1252 GGQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGK 1431 F++ K+ CP E E+ +M+++PY+SAVGSLMYAMVCTRPDIA AVGVVSRFLSNPG+ Sbjct: 1084 DMHFKLCKKQCPSSEKEKEEMQRVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLSNPGR 1143 >sp|P10978.1|POLX_TOBAC RecName: Full=Retrovirus-related Pol polyprotein from transposon TNT 1-94; Includes: RecName: Full=Protease; Includes: RecName: Full=Reverse transcriptase; Includes: RecName: Full=Endonuclease gi|20045|emb|CAA32025.1| unnamed protein product [Nicotiana tabacum] Length = 1328 Score = 515 bits (1327), Expect = e-144 Identities = 268/479 (55%), Positives = 337/479 (70%), Gaps = 2/479 (0%) Frame = +1 Query: 1 YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAFTNDLVDSEPEVPTVER 180 YGDE+FGY+L+DP+ KKVIRSRDVVF E + + EK++ N ++ + +P+ Sbjct: 679 YGDEEFGYRLWDPVKKKVIRSRDVVFRESEVRTAADMSEKVK---NGIIPNFVTIPSTSN 735 Query: 181 AEGIENAENHEFEAHDENP--IAHDGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGARR 354 + E E P + G + +++ E E P + E H P RR Sbjct: 736 NPTSAESTTDEVSEQGEQPGEVIEQGEQ---LDEGVEEVEHPTQGEEQHQP------LRR 786 Query: 355 SDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYELV 534 S+R R+ S RYP YVL+SD EP ++ L +K + +KAM +EM+SL KN TY+LV Sbjct: 787 SERPRVESRRYPSTEYVLISDDREPESLKEVLSHPEKNQLMKAMQEEMESLQKNGTYKLV 846 Query: 535 EKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSIRV 714 E P G++ LK KW++K+K + + R+KARLVVKGF Q+KGIDFDEIFSPVVKMTSIR Sbjct: 847 ELPKGKRPLKCKWVFKLKKDGDCKLVRYKARLVVKGFEQKKGIDFDEIFSPVVKMTSIRT 906 Query: 715 VLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQA 894 +L +AAS++LEVEQLDVKTAFLHGDLEE++YM+QPEGFEV GK+H+VCKL KSLYGLKQA Sbjct: 907 ILSLAASLDLEVEQLDVKTAFLHGDLEEEIYMEQPEGFEVAGKKHMVCKLNKSLYGLKQA 966 Query: 895 PRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXXX 1074 PRQWY+KFDSFM Q Y K+ SD C + +RF + +FI+LLLYVDDMLIVG Sbjct: 967 PRQWYMKFDSFMKSQTYLKTYSDPCVYFKRFSENNFIILLLYVDDMLIVGKDKGLIAKLK 1026 Query: 1075 XXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLG 1254 SF+MKDLG A+QILGM+I R+R S KLWLSQE YIE+VL+RFNM AKPVS PL Sbjct: 1027 GDLSKSFDMKDLGPAQQILGMKIVRERTSRKLWLSQEKYIERVLERFNMKNAKPVSTPLA 1086 Query: 1255 GQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGK 1431 G +++K+MCP E+ M K+PY+SAVGSLMYAMVCTRPDIA AVGVVSRFL NPGK Sbjct: 1087 GHLKLSKKMCPTTVEEKGNMAKVPYSSAVGSLMYAMVCTRPDIAHAVGVVSRFLENPGK 1145 >gb|AAW22873.1| putative polyprotein [Solanum lycopersicum] Length = 687 Score = 511 bits (1315), Expect = e-142 Identities = 267/485 (55%), Positives = 337/485 (69%), Gaps = 8/485 (1%) Frame = +1 Query: 1 YGDEKFGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKL--QAFTNDLVDSE-PEVPT 171 YGDE+FGY+LYDP +KV+RSRDVVF E + +K F++D++D P V Sbjct: 23 YGDEEFGYRLYDPAKQKVVRSRDVVFYEHEMSFHLLGADKTYYSNFSHDVIDMPMPHVSA 82 Query: 172 VE-RAEGIENAENHEFEAHDENPIAH---DGIEPIGIEDA-DEMHEPPPEQAEVHPPEAP 336 + + G + HE AH+ + I D + P ++A D H Q E P Sbjct: 83 SDDQLTGDAPEDGHEI-AHEHDHIEEVQPDVVVPQPDDEAVDVQHGESSNQGEKSSPHVE 141 Query: 337 ADGARRSDRERLASTRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKN 516 R+S R R S YP Y+L++D GEP Q+ L +DK+ WLKAM ++MDSL KN Sbjct: 142 EPTLRKSTRVRQPSRLYPSSEYILITDEGEPESLQEVLSHSDKDHWLKAMQEDMDSLKKN 201 Query: 517 HTYELVEKPTGRKVLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVK 696 TY+LV+ P G+KVLKN+W++K K ++ N + KARLVVKG Q+KGIDFDEIF+PVVK Sbjct: 202 ETYDLVKPPKGKKVLKNRWLFKNK-KDGNKLVKRKARLVVKGCHQKKGIDFDEIFAPVVK 260 Query: 697 MTSIRVVLGMAASMNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSL 876 MTSIR++LG+A +NLE+EQLDVKTAFLHGDL E++YM+QPEGFEVKGKE+ VCKL KSL Sbjct: 261 MTSIRMILGLATCLNLELEQLDVKTAFLHGDLHEEIYMEQPEGFEVKGKENFVCKLKKSL 320 Query: 877 YGLKQAPRQWYIKFDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXX 1056 YGLKQAPRQWY KFDSFM YK++ +D C + ++F +G+FI+L LYVDDMLIVG Sbjct: 321 YGLKQAPRQWYHKFDSFMSNNEYKRTTADPCVYFRKFSEGNFIILCLYVDDMLIVGQDVE 380 Query: 1057 XXXXXXXXXXXSFEMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKP 1236 SF+MKDLG AKQILGM I RDRK+GKLWLSQE+YIE+VL+RFNM AKP Sbjct: 381 MICRLKEDLSKSFDMKDLGPAKQILGMEIARDRKAGKLWLSQENYIERVLERFNMKNAKP 440 Query: 1237 VSCPLGGQFRMTKEMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFL 1416 V+ PL F+++K CP E E+ M IPY+S VGSLMYAMVCTRPDIA AVG+VSR+L Sbjct: 441 VNTPLAAHFKLSKRCCPTTEKEKESMSHIPYSSVVGSLMYAMVCTRPDIAHAVGLVSRYL 500 Query: 1417 SNPGK 1431 +NP K Sbjct: 501 ANPSK 505 >gb|AER13172.1| putative gag/pol polyprotein [Phaseolus vulgaris] Length = 1556 Score = 499 bits (1284), Expect = e-139 Identities = 257/472 (54%), Positives = 337/472 (71%) Frame = +1 Query: 16 FGYKLYDPINKKVIRSRDVVFLEDQTIADFEEGEKLQAFTNDLVDSEPEVPTVERAEGIE 195 FG K Y ++KK +RSRDV F+EDQTI D ++ EK+ + T++ + + V + E+ + ++ Sbjct: 643 FGCKAY--VHKKAVRSRDVKFMEDQTIEDIDKTEKITSETDNRLSNVDPVLSDEQHDDVD 700 Query: 196 NAENHEFEAHDENPIAHDGIEPIGIEDADEMHEPPPEQAEVHPPEAPADGARRSDRERLA 375 + + + A D + I+D++E H ++ PE P RR Sbjct: 701 DQQLGD---------AFD----VPIDDSEEEHGMSQDEDLGDAPEPPQVQIRR------- 740 Query: 376 STRYPPHTYVLLSDGGEPMYYQKALEGTDKEKWLKAMHDEMDSLHKNHTYELVEKPTGRK 555 YP YV L+D GEP Y +A+E +K+KWL AM DEM SLH NHT++LV+ P +K Sbjct: 741 ---YPSDDYVTLTDEGEPECYLEAMESEEKKKWLDAMQDEMKSLHDNHTFDLVKLPKDKK 797 Query: 556 VLKNKWIYKVKHEENNPHPRHKARLVVKGFGQRKGIDFDEIFSPVVKMTSIRVVLGMAAS 735 L+N+WIY+VK E N+ PR+KARLVVKGF QRKGIDF+EIFSPVVKM+SIR+VL +AA+ Sbjct: 798 ALENRWIYRVKQESNSTSPRYKARLVVKGFRQRKGIDFNEIFSPVVKMSSIRIVLSLAAT 857 Query: 736 MNLEVEQLDVKTAFLHGDLEEDVYMDQPEGFEVKGKEHLVCKLIKSLYGLKQAPRQWYIK 915 ++LEVEQ+DVKTAFLHGDLEE++YM QP+GF V+GKE VC+L KSLYGLKQAPRQWY K Sbjct: 858 LDLEVEQMDVKTAFLHGDLEEEIYMKQPDGFLVEGKEDHVCRLRKSLYGLKQAPRQWYKK 917 Query: 916 FDSFMVKQGYKKSASDHCAFVQRFPDGDFIVLLLYVDDMLIVGPXXXXXXXXXXXXXXSF 1095 F+S M +QGYKK+ SDHC FV++F + DFI+LLLYVDD+LIVG SF Sbjct: 918 FESVMCEQGYKKTTSDHCVFVKKFANDDFIILLLYVDDILIVGKDISMINRLKKQLSESF 977 Query: 1096 EMKDLGQAKQILGMRITRDRKSGKLWLSQESYIEKVLKRFNMDQAKPVSCPLGGQFRMTK 1275 MKD+G AKQILG+RI RDR+ KLWLSQE+Y+++VL+RF M+ AK VS PL F+++ Sbjct: 978 AMKDMGAAKQILGIRIMRDRQEKKLWLSQENYVKRVLQRFQMENAKVVSTPLATHFKLST 1037 Query: 1276 EMCPKGEHEQSQMEKIPYASAVGSLMYAMVCTRPDIAFAVGVVSRFLSNPGK 1431 + P E+E+S M++IPYASAVGSLMYAMVCTRPDIA VG VSRF+SNPG+ Sbjct: 1038 KQSPSYEYEKSDMQRIPYASAVGSLMYAMVCTRPDIAHVVGTVSRFMSNPGR 1089