BLASTX nr result

ID: Coptis25_contig00010861 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010861
         (3338 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADJ18449.1| gag/pol protein [Bryonia dioica]                       634   0.0  
dbj|BAA22288.1| polyprotein [Oryza australiensis]                     637   0.0  
emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]   588   0.0  
gb|AAC26250.1| contains similarity to reverse transcriptase (Pfa...   626   0.0  
emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]   543   e-176

>gb|ADJ18449.1| gag/pol protein [Bryonia dioica]
          Length = 1292

 Score =  634 bits (1636), Expect(2) = 0.0
 Identities = 339/698 (48%), Positives = 446/698 (63%), Gaps = 11/698 (1%)
 Frame = -1

Query: 2063 GLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYF 1887
            G+L  L    +  CESCL GK TK+ F GK  RA   L+L+HSD+CGPMNV AR G  YF
Sbjct: 464  GILNQLEDNSLPPCESCLEGKMTKRSFTGKGLRAKVPLELVHSDLCGPMNVKARGGYEYF 523

Query: 1886 ITFTDDYTRHGTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKEL 1707
            I+F DD++R+G VYL+ HKS++ + FK+YK  VEN++ +TIK LR+DRG EY+  +F++ 
Sbjct: 524  ISFIDDFSRYGHVYLLHHKSESFEKFKEYKAEVENEIGKTIKTLRSDRGGEYMDSKFQDY 583

Query: 1706 CENKGIARQLTIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNL 1527
                GI  QL+ P TPQQNGVSERRN+TLLDMVRSMM+ A LP SFWG AL TA HILN 
Sbjct: 584  LIEFGIQSQLSAPSTPQQNGVSERRNRTLLDMVRSMMSYAQLPDSFWGYALETAIHILNN 643

Query: 1526 VPSKTVDKTPYELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCIFIRYSETSK 1347
            VPSK+V +TPYELW GR+  L Y + WGC A V  QN +  KL    K C+F+ Y + S+
Sbjct: 644  VPSKSVLETPYELWKGRKSSLRYFRIWGCPAHVLVQNPK--KLEPRSKLCLFVGYPKESR 701

Query: 1346 GYVFLGEDTQGHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNLITADEQGEDETFIN 1167
            G +F             + N  FLE+ +    +    I L E+    T            
Sbjct: 702  GGLFYHPQEN---KVFVSTNATFLEEDHXRNHQPRSKIVLKEMFKNATD----------K 748

Query: 1166 PDSSNNGIGQ--IIDQSQPRKSVRGHIPKRRFEIEGEINMTNALTEIS--------DEPK 1017
            P SS   + +  I DQS   + +R  +P+R   +  + N    L E          ++P 
Sbjct: 749  PSSSTKVVDKANISDQSHTSQELR--VPRRSGRVVHQPNRYLGLVETQIIIPDDGVEDPL 806

Query: 1016 TFKEAISGSNTSKWMEAMKEELESMKKNKVWDLVDLPPNMRSIGNRWVLKIKKNAEGNIN 837
            T+K+A++  +  +W++AM  E+ESM  N VW LVDLP +++ IG +W+ K K++  G + 
Sbjct: 807  TYKQAMNDVDRDQWIKAMNLEMESMYFNSVWTLVDLPSDVKPIGCKWIYKRKRDQAGKVQ 866

Query: 836  KFKARLVAKGYTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLEFYQIDVKTAFLNGEL 657
             FKARLVAKGYTQKEG+DYE+TFSPV    SI +LLS+    + E +Q+DVKTAFLNG L
Sbjct: 867  TFKARLVAKGYTQKEGVDYEETFSPVAMLKSIRILLSIATFYNYEIWQMDVKTAFLNGNL 926

Query: 656  QEEIYMDQPTGFSIKGQEHKVCKLNRSIYDLKQTSRQWNLRFHEAMLQDKFEMVNEDHCV 477
            +E IYM QP GF  + QE KVCKL +SIY LKQ SR WN+RF  A+    FE   ++ CV
Sbjct: 927  EESIYMVQPEGFIAQDQEQKVCKLQKSIYGLKQASRSWNIRFDTAIKSYGFEQNVDEPCV 986

Query: 476  YVKTSKNGFVILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDR 297
            Y K   +    L LYVDDILL GN+   +    +WL+  F+MKD+GEA Y+LG++I R+R
Sbjct: 987  YKKIVNSVVAFLILYVDDILLIGNDVEYLTDVKKWLNTQFQMKDLGEAQYILGIQIVRNR 1046

Query: 296  PKRLLSLSQETYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSS 117
              + L++SQ +YI KVL R+ M + K+  LP   G  LS    PK P E + M+N+PYSS
Sbjct: 1047 KNKTLAMSQASYIDKVLSRYKMQNSKKGQLPFRHGIHLSKEQCPKTPQEVEDMRNIPYSS 1106

Query: 116  AVGSLMYAMLCTRPDICYAVGLVSRFQTNPGVAHWKAV 3
            AVGSLMYAMLCTRPDICY+VG+VSR+Q+NPG  HW AV
Sbjct: 1107 AVGSLMYAMLCTRPDICYSVGIVSRYQSNPGRDHWTAV 1144



 Score =  115 bits (287), Expect(2) = 0.0
 Identities = 103/423 (24%), Positives = 189/423 (44%), Gaps = 32/423 (7%)
 Frame = -2

Query: 3313 AYTAVLKKYNEYTSKDNVARIAILGTMKNDFMMRYDGLGSAKELWEAVKADLGGTTTAQL 3134
            A   V + Y+ +   ++ AR+ IL +M +    ++D + +AK + ++++ ++ G  +  L
Sbjct: 51   ANRTVREAYDRWVKANDKARVYILASMTDVLAKKHDSIATAKGIMDSLR-EMFGQPSWSL 109

Query: 3133 RR--LQMSFDKFIKLPHTSMTQHCT--VMRNMVAELAQAGQVLSNEQQIQVVIRSLPKTW 2966
            R   ++  + K +K   TS+ +H    +M   +AE+   G  +    Q+  +++SLPK++
Sbjct: 110  RHEAIKHIYTKRMK-EGTSVREHVLDMMMHFNIAEVN--GGPIDEANQVSFILQSLPKSF 166

Query: 2965 EQFRLILTHDDSITNFAQVQRKCELEEQRLLNEKRVVQTEANVVNSKKRKAPWNXXXXXX 2786
              F+   + +    N   +    EL+  + L   +  + EANV  +K++    +      
Sbjct: 167  VPFQTNASLNKIEFNLTTLLN--ELQRFQNLTLSKGKEVEANVAVTKRKFIRGSSSKNKV 224

Query: 2785 XXXXXXKPN------PQQKKPRKSIDMTSVECFRCHQMGHYARACPS--PEVSFTLSTVN 2630
                           P   K +K+ D    +CF C+Q GH+ R CP    E     +T  
Sbjct: 225  GPSKAQMKKKGKGKAPNTSKVKKNADKG--KCFHCNQDGHWKRNCPKYLAEKKAEKATQG 282

Query: 2629 -----VISTVMLSDSSQYWIVDSAATDHISRDRSLFEDFRKLPQGTRRVHMGNQSVADVL 2465
                 V+ T ++   +  WI+DS AT+HI         ++KL +G   + +G   V    
Sbjct: 283  KYDLLVVETCLVECDASTWILDSGATNHICFSFQETSSWKKLKEGEITLKVGTGEVVSAE 342

Query: 2464 GTGTCRLDFASGRSILIEEVLFVPSIRRNLLSVLKLLQESYVFNFSQNSLEISLNNSLIG 2285
              G   L F   R +++++VL+VP ++RNL+S+  +L+  Y  +F  N + I      I 
Sbjct: 343  AVGDLTL-FFQDRYLILKDVLYVPLMKRNLISIACILEHIYTISFEVNEVFILCKGIQIC 401

Query: 2284 HAYLMNSFMTLHLAQTEVFMSKMV---------------GCQLWHARLGHIGHSRIDRLA 2150
             A   N+   L   +  V ++  +                  LWH RLGHI  +RI+RL 
Sbjct: 402  SAIRENNLYKLRPTRANVVLNTEMFRTLETQNKKQKVSSNAYLWHLRLGHINLNRIERLV 461

Query: 2149 GGG 2141
              G
Sbjct: 462  KSG 464


>dbj|BAA22288.1| polyprotein [Oryza australiensis]
          Length = 1317

 Score =  637 bits (1642), Expect(2) = 0.0
 Identities = 337/693 (48%), Positives = 455/693 (65%), Gaps = 6/693 (0%)
 Frame = -1

Query: 2063 GLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYF 1887
            GLL +      ETCESCL GK TK PF G ++RA+  L L+H+D+CGPM+ TAR G  YF
Sbjct: 459  GLLHSFDFESFETCESCLLGKMTKAPFTGHSERASDLLALVHTDVCGPMSSTARGGYQYF 518

Query: 1886 ITFTDDYTRHGTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKEL 1707
            ITFTDD++R+G +YLM HKS++ + FK+++N V+N L +TIK LR+DRG EY+S EF   
Sbjct: 519  ITFTDDFSRYGYIYLMRHKSESFEKFKEFQNEVQNHLGKTIKFLRSDRGGEYVSQEFGNH 578

Query: 1706 CENKGIARQLTIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNL 1527
             ++ GI  QLT P TPQ NGVSERRN+TLLDMVRSMM+Q++LP+SFWG AL TAA  LN 
Sbjct: 579  LKDCGIVPQLTPPGTPQWNGVSERRNRTLLDMVRSMMSQSDLPLSFWGYALETAALTLNR 638

Query: 1526 VPSKTVDKTPYELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCIFIRYSETSK 1347
            VPSK+V+KTPYE+WTG+ P L++LK WGC A+V     +  KL+    KC  + Y + +K
Sbjct: 639  VPSKSVEKTPYEIWTGQPPSLSFLKIWGCEAYVKRLQSD--KLTPKSDKCFVVGYPKETK 696

Query: 1346 GYVFLGEDTQGHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNL-----ITADEQGED 1182
            GY F   +         AR+  FLE ++  R      + L EV         T + Q ED
Sbjct: 697  GYYFYNRE---QAKVFVARHGVFLEKEFLSRRVSGIRVHLEEVQETPETVSATTEPQQED 753

Query: 1181 ETFINPDSSNNGIGQIIDQSQPRKSVRGHIPKRRFEIEGEINMTNALTEISDEPKTFKEA 1002
            ++   P         ++D   PR+S R      R+         + L   +DEPKT++EA
Sbjct: 754  QSVAPP---------VVDTPAPRRSERSRRAPDRYT---GAEQRDILLLDNDEPKTYEEA 801

Query: 1001 ISGSNTSKWMEAMKEELESMKKNKVWDLVDLPPNMRSIGNRWVLKIKKNAEGNINKFKAR 822
            + G +++KW+ AMK E+ESM  N+VW+LVD P  +++I  +W+ K K + +GN++ +KAR
Sbjct: 802  MVGHDSNKWLGAMKSEIESMYDNQVWNLVDPPDGVKTIECKWLFKKKADMDGNVHIYKAR 861

Query: 821  LVAKGYTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLEFYQIDVKTAFLNGELQEEIY 642
            LVAKG+ Q +G+DY++TFSPV    SI ++L++ A+ D E +Q+DVKTAFLNG L E++Y
Sbjct: 862  LVAKGFKQIQGVDYDETFSPVAMLKSIRIILAIAAYFDYEIWQMDVKTAFLNGNLSEDVY 921

Query: 641  MDQPTGFSIKGQEHKVCKLNRSIYDLKQTSRQWNLRFHEAMLQDKFEMVNEDHCVYVKTS 462
            M QP GF       K+CKL +SIY LKQ SR WN+RF E +    F    E+ CVY K S
Sbjct: 922  MIQPQGFVDPESPGKICKLQKSIYGLKQASRSWNIRFDEVIKGFGFIKNEEEACVYKKVS 981

Query: 461  KNGFVILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLL 282
             +  V L LYVDDILL GN+  ++ S    L  +F MKD+GEA+Y+LG++I RDR KRL+
Sbjct: 982  GSAIVFLILYVDDILLIGNDIPMLESVKSSLKNSFSMKDLGEAAYILGIRIYRDRSKRLI 1041

Query: 281  SLSQETYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAVGSL 102
             LSQ TYI KVL+RFNM D K+  LP+S G +LS    P+   E   M  VPY+SA+GS+
Sbjct: 1042 GLSQSTYIDKVLKRFNMHDSKKGFLPMSHGINLSKNQCPQTHDERNKMGMVPYASAIGSI 1101

Query: 101  MYAMLCTRPDICYAVGLVSRFQTNPGVAHWKAV 3
            MYAMLCTRPD+ YA+   SR+Q++PG  HW AV
Sbjct: 1102 MYAMLCTRPDVSYALSATSRYQSDPGEGHWTAV 1134



 Score = 95.9 bits (237), Expect(2) = 0.0
 Identities = 76/330 (23%), Positives = 132/330 (40%), Gaps = 16/330 (4%)
 Frame = -2

Query: 3082 MTQHCTVMRNMVAELAQAGQVLSNEQQIQVVIRSLPKTWEQFRLILTHDDSITNFAQVQR 2903
            ++ H   M   +  L + G  LS E    V+++SLP ++E F L    ++     A++  
Sbjct: 134  VSPHVIKMIGYIESLEKLGFPLSQELATDVILQSLPPSFEPFILNYHMNNMDRTLAELHG 193

Query: 2902 KCELEEQRLLNEKRVVQTEANVVNSKKRKAPWNXXXXXXXXXXXXKPNPQQ-KKPRKSID 2726
              +  E+ +      V    N     KRK P                +    KK +K   
Sbjct: 194  MLKTVEESIQKNGHHVMMMQNA----KRKPPVKKLCTKRKLTPDEIASASNAKKGKKGSA 249

Query: 2725 MTSVECFRCHQMGHYARACPS-------PEVSFTLSTVNVISTVMLSDSSQYWIVDSAAT 2567
             +   CF C + GH+ R C          + + + S +NVI   + +  +  W+ D+ + 
Sbjct: 250  ASDAVCFYCKETGHWKRNCKKYMEDLKKKQSTTSASGINVIDINLATSPTDSWVFDTGSV 309

Query: 2566 DHISRDRSLFEDFRKLPQGTRRVHMGNQSVADVLGTGTCRLDFASGRSILIEEVLFVPSI 2387
             H  +        R L +G   + +GN +    +  GT  L   SG  + +     VP++
Sbjct: 310  AHSCKSLQGMRRSRGLRRGEVNLRVGNGASVATVAVGTVPLHLPSGLVLELNNCYCVPTL 369

Query: 2386 RRNLLSVLKLLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQTEVF------- 2228
             +N++S   L  E Y F    N   I L +    HA L+N    L+L  + ++       
Sbjct: 370  CQNVISASCLQAEGYDFRSMNNGCSIYLRDMFYFHAPLVNGLYVLNLEASPIYNINTERQ 429

Query: 2227 -MSKMVGCQLWHARLGHIGHSRIDRLAGGG 2141
              + +    +WH RLGHI   R+++L   G
Sbjct: 430  LSNDINPTFIWHCRLGHINKKRMEKLHKDG 459


>emb|CAN67821.1| hypothetical protein VITISV_025855 [Vitis vinifera]
          Length = 1356

 Score =  588 bits (1517), Expect(2) = 0.0
 Identities = 318/717 (44%), Positives = 444/717 (61%), Gaps = 31/717 (4%)
 Frame = -1

Query: 2063 GLLGNLTSVKMETCESCLAGKATKKPFGKAQRATYHLQLIHSDICGPMNVTARHGDLYFI 1884
            G+L +L     + C  C+ GK TK     A RAT  L+LIH+DICGP    + +G  YFI
Sbjct: 454  GILDSLDFSDFDICVECIKGKQTKTKKLGANRATDVLELIHTDICGPYPTASWNGQQYFI 513

Query: 1883 TFTDDYTRHGTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLS------- 1725
            TF DDY+R+G ++L+  KS +LD FK +K  VE QL++ IK++R+DRG EY         
Sbjct: 514  TFIDDYSRYGYLFLIHEKSQSLDVFKTFKAEVELQLNKRIKSVRSDRGGEYYGRYDGSGE 573

Query: 1724 ---DEFKELCENKGIARQLTIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDAL 1554
                 F +  E  GI  Q T+P +P  NGV+ERRN+TL DMVRSM++ + LP   WG+AL
Sbjct: 574  QRPGPFAKYLEECGIVPQYTMPGSPSMNGVAERRNRTLKDMVRSMISHSTLPEKLWGEAL 633

Query: 1553 LTAAHILNLVPSKTVDKTPYELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCI 1374
             TAA+ILN VP+K   KTPYELWTGR+P L +   WGC A          KL +      
Sbjct: 634  KTAAYILNRVPTKAAAKTPYELWTGRKPSLKHFHIWGCPAEARPYKPHEKKLDSKTVSSY 693

Query: 1373 FIRYSETSKGYVFLGEDTQ-----GHVTEIE---------ARNVRFLEDQYPMRGEVDKD 1236
            FI Y+E S+G+ F     +     G  T  E         ARN+ F E++       +  
Sbjct: 694  FIGYAERSRGFKFYDPAIRSIFETGTATFFEDVEFGGRNQARNIVFEEEEGSTIAFDNVQ 753

Query: 1235 IQLYEVDNLITADEQGEDETFINPDSSNNGIGQIIDQSQPRKSV--RGHIPKRRFEIEGE 1062
            + L  +D  +  D Q  D   + P  +N  I       QP++++  R    +RR  I  +
Sbjct: 754  VSLPIIDQEVNLDPQPTDN-IVQPLIANEDIAPEEQTQQPQENMPLRRSTRERRNAISDD 812

Query: 1061 INMTNALTEIS-----DEPKTFKEAISGSNTSKWMEAMKEELESMKKNKVWDLVDLPPNM 897
              +     E+      D+P  F++A+  SN+ KW+EAM EE +SM+ NKVW+LV LP   
Sbjct: 813  YIVYLQEREVESGMMEDDPINFQQAMKSSNSHKWIEAMNEEYKSMQDNKVWELVPLPVGT 872

Query: 896  RSIGNRWVLKIKKNAEGNINKFKARLVAKGYTQKEGIDYEDTFSPVVRFASIHLLLSMVA 717
            + IG +W+ K K+++ GN+ ++KARLVAKG+TQKEGID+++TFSPV    S  +++++VA
Sbjct: 873  KPIGCKWIFKTKRDSNGNVERYKARLVAKGFTQKEGIDFKETFSPVSTKDSFRIIMALVA 932

Query: 716  HLDLEFYQIDVKTAFLNGELQEEIYMDQPTGFSIKGQEHKVCKLNRSIYDLKQTSRQWNL 537
            H DLE +Q+DVKTAFLNG++ E IYM QP  F  +  ++ VCKL +SIY LKQ SRQW  
Sbjct: 933  HYDLELHQMDVKTAFLNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYF 992

Query: 536  RFHEAMLQDKFEMVNEDHCVYVKTSKNGFVILSLYVDDILLAGNNKALINST*EWLSLNF 357
            +FH+ ++   FE    D CVY K S + ++ L LYVDDILLA N+ ++++ T  +LS +F
Sbjct: 993  KFHQIIVSYGFEANLMDECVYHKFSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHF 1052

Query: 356  EMKDMGEASYVLGVKITRDRPKRLLSLSQETYIKKVLERFNMTDCKQVDLPVSLGESLSS 177
            EMKD+G+AS+VLG++I RDR + +L LSQ TYI KVL+R+ M + K  D PV+ G+  S 
Sbjct: 1053 EMKDLGDASFVLGIQIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSL 1112

Query: 176  *MSPKNPTETQAMKNVPYSSAVGSLMYAMLCTRPDICYAVGLVSRFQTNPGVAHWKA 6
               PKN  E+Q M+ +PY+SAVGSLMYA +CTRPDI Y VG++ R+ +NPG+ HWKA
Sbjct: 1113 NQCPKNSLESQEMQKIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWKA 1169



 Score =  106 bits (264), Expect(2) = 0.0
 Identities = 91/335 (27%), Positives = 147/335 (43%), Gaps = 20/335 (5%)
 Frame = -2

Query: 3085 SMTQHCTVMRNMVAELAQAGQVLSNEQQIQVVIRSLPKTWEQFRLILTHDDSITNFAQVQ 2906
            ++ ++   M ++ ++L      LS++  + +V+ SLP  + QF++            ++ 
Sbjct: 134  NVREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPAQFNQFKVSYNCQKDKWTLNELI 193

Query: 2905 RKCELEEQRLLNEKRVVQTEANVVNSK-KRKAPWNXXXXXXXXXXXXKPNPQQKKPRKSI 2729
              C  EE+RL  +K      A+    K KRK   N               P+QKK +   
Sbjct: 194  SFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAASN--------GPEQKKQK--- 242

Query: 2728 DMTSVECFRCHQMGHYARACPSP---EVSFTLSTVNVISTVMLSDSSQY-WIVDSAATDH 2561
                V CF C++ GH  + C       V   +    V S V L+  S+  W +DS AT H
Sbjct: 243  --VEVTCFFCNKPGHTKKECTKYAAWRVKKGMFLTLVCSEVNLASVSRNTWWLDSGATTH 300

Query: 2560 ISRDRSLFEDFRKLPQGTRRVHMGNQSVADVLGTGTCRLDFASGRSILIEEVLFVPSIRR 2381
            I         +RK     R +++G+    +V   G  RL   SG  + + +   VPS RR
Sbjct: 301  ICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRLLLKSGYFLDLIDTFXVPSFRR 360

Query: 2380 NLLSVLKLLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQ------------- 2240
            NL+SV  L +  Y  +F  N   +S+N++ +G   L+N +  L+L +             
Sbjct: 361  NLISVSVLDKSGYCCSFGNNKFTLSINSNAVGTG-LLNVYDNLYLLETVPSYNETLHVES 419

Query: 2239 --TEVFMSKMVGCQLWHARLGHIGHSRIDRLAGGG 2141
              T+  ++K     LWH RLGHI  SR++RL   G
Sbjct: 420  RGTKRKLNKDNSASLWHKRLGHISKSRVERLVSDG 454


>gb|AAC26250.1| contains similarity to reverse transcriptase (Pfam: rvt.hmm, score
            19.29) [Arabidopsis thaliana] gi|7267136|emb|CAB80804.1|
            putative retrotransposon protein [Arabidopsis thaliana]
          Length = 964

 Score =  626 bits (1614), Expect(2) = 0.0
 Identities = 337/691 (48%), Positives = 449/691 (64%), Gaps = 4/691 (0%)
 Frame = -1

Query: 2063 GLLGNLTSVKMETCESCLAGKATKKPF-GKAQRATYHLQLIHSDICGPMNVTARHGDLYF 1887
            GLL +      ETCESCL GK TK PF G ++RA+  L LIH+D+CGPM+ +AR    YF
Sbjct: 103  GLLNSFDYESYETCESCLLGKMTKAPFTGHSERASDLLGLIHTDVCGPMSTSARGNYQYF 162

Query: 1886 ITFTDDYTRHGTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLSDEFKEL 1707
            ITFTDD++R+G VYLM HKS + + FK+++N V+NQ  ++IKALR+DRG EYLS  F + 
Sbjct: 163  ITFTDDFSRYGYVYLMKHKSKSFENFKEFQNEVQNQFGKSIKALRSDRGGEYLSQVFSDH 222

Query: 1706 CENKGIARQLTIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDALLTAAHILNL 1527
                GI  QLT P TPQ NGVSERRN+TLLDMVRSMM+  +LP  FWG AL T+A +LN 
Sbjct: 223  LRECGIVSQLTPPGTPQWNGVSERRNRTLLDMVRSMMSHTDLPSPFWGYALETSAFMLNR 282

Query: 1526 VPSKTVDKTPYELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCIFIRYSETSK 1347
             PSK+V+KTPYE+WTG+ P L++LK WGC ++      +  KL     KC F+ Y + +K
Sbjct: 283  CPSKSVEKTPYEIWTGKVPNLSFLKIWGCESYAKRLITD--KLGPKSDKCYFVGYPKETK 340

Query: 1346 GYVFLGEDTQGHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNLITADEQGEDETFIN 1167
            GY F    T   V  +  RN  FLE ++  +G     + L EV      + QG+  T   
Sbjct: 341  GYYFY-HPTDNKVFVV--RNGAFLEREFLSKGTSGSKVLLEEV-----REPQGDVPTSQE 392

Query: 1166 PDSSN--NGIGQIIDQSQPRKSVRGHIPKRRFEIEGEINMTNALTEI-SDEPKTFKEAIS 996
                +    +  I+ + + R+S R      RF     +   +AL  I SDEP +++EA+ 
Sbjct: 393  EHQLDLRRVVEPILVEPEVRRSERSRHEPDRFR--DWVMDDHALFMIESDEPTSYEEALM 450

Query: 995  GSNTSKWMEAMKEELESMKKNKVWDLVDLPPNMRSIGNRWVLKIKKNAEGNINKFKARLV 816
            G ++ KW+EA K E+ESM +NKVW LVDLP  ++ I  +W+ K K + +GNI  +KA LV
Sbjct: 451  GPDSDKWLEAAKSEMESMSQNKVWTLVDLPDGVKPIECKWIFKKKIDMDGNIQIYKAGLV 510

Query: 815  AKGYTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLEFYQIDVKTAFLNGELQEEIYMD 636
            AKGY Q  GIDY++T+SPV    SI +LL+  AH D E +Q+DVKTAFLNG L+E +YM 
Sbjct: 511  AKGYKQVHGIDYDETYSPVAMLKSIRILLATAAHYDYEIWQMDVKTAFLNGNLEEHVYMT 570

Query: 635  QPTGFSIKGQEHKVCKLNRSIYDLKQTSRQWNLRFHEAMLQDKFEMVNEDHCVYVKTSKN 456
            QP GF++     KVCKL+RSIY LKQ SR WNLRF+EA+ +  F    E+ CVY KTS +
Sbjct: 571  QPEGFTVPEAARKVCKLHRSIYGLKQASRSWNLRFNEAIKEFDFIRNEEEPCVYKKTSGS 630

Query: 455  GFVILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGVKITRDRPKRLLSL 276
                L LYVDDILL GN+  L+ S   WL   F MKDMGEA+Y+LG++I RDR  +++ L
Sbjct: 631  AVAFLVLYVDDILLLGNDIPLLQSVKTWLGSCFSMKDMGEAAYILGIRIYRDRLNKIIGL 690

Query: 275  SQETYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMKNVPYSSAVGSLMY 96
            SQ+TYI KVL RFNM D K+  +P+S G +LS    P    E + M  +PY+SA+GS+MY
Sbjct: 691  SQDTYIDKVLHRFNMHDSKKGFIPMSHGITLSKTQCPSTHDERERMSKIPYASAIGSIMY 750

Query: 95   AMLCTRPDICYAVGLVSRFQTNPGVAHWKAV 3
            AML TRPD+  A+ + SR+Q++PG +HW  V
Sbjct: 751  AMLYTRPDVACALSMTSRYQSDPGESHWIVV 781



 Score = 45.8 bits (107), Expect(2) = 0.0
 Identities = 27/99 (27%), Positives = 47/99 (47%), Gaps = 7/99 (7%)
 Frame = -2

Query: 2416 IEEVLFVPSIRRNLLSVLKLLQESYVFNFSQNSLEISLNNSLIGHA------YLMNSFMT 2255
            ++   +VP+I +N++SV  L  E + F+          ++   G A      +++N  M 
Sbjct: 5    LKNCYYVPAINKNIISVSCLDMEGFHFSIKNKCCSFDRDDMFYGSAPLDNGLHVLNQSMP 64

Query: 2254 LHLAQTEVFMSKMVGCQ-LWHARLGHIGHSRIDRLAGGG 2141
            ++  +T+ F S  +    LWH RLGHI    I +L   G
Sbjct: 65   IYNIRTKKFKSNDLNPTFLWHCRLGHINEKHIQKLHSDG 103


>emb|CAN81238.1| hypothetical protein VITISV_031073 [Vitis vinifera]
          Length = 1354

 Score =  543 bits (1398), Expect(2) = e-176
 Identities = 298/703 (42%), Positives = 418/703 (59%), Gaps = 17/703 (2%)
 Frame = -1

Query: 2063 GLLGNLTSVKMETCESCLAGKATKKPFGKAQRATYHLQLIHSDICGPMNVTARHGDLYFI 1884
            G+L +L     + C  C+ GK TK     A RAT  L+LIH+DI GP    + +G  YFI
Sbjct: 499  GILDSLDFSDFDICVECIKGKQTKTKKLGANRATDVLELIHTDIXGPYPTASWNGQXYFI 558

Query: 1883 TFTDDYTRHGTVYLMSHKSDALDCFKKYKNLVENQLDRTIKALRTDRGREYLS------- 1725
            TF DDY+R+G ++L+  KS +LD FK +K  VE QL++ IK++R+DRG EY         
Sbjct: 559  TFIDDYSRYGYLFLIHEKSQSLDVFKTFKXEVELQLNKRIKSVRSDRGGEYYGRYDGSGE 618

Query: 1724 ---DEFKELCENKGIARQLTIPYTPQQNGVSERRNKTLLDMVRSMMAQANLPISFWGDAL 1554
                 F +  E  GI  Q T+P +P  NGV+ERRN+ L DMVRSM++ + LP   WG+AL
Sbjct: 619  QHPGPFAKYLEECGIVPQYTMPGSPSMNGVAERRNRILKDMVRSMISHSTLPEKLWGEAL 678

Query: 1553 LTAAHILNLVPSKTVDKTPYELWTGRQPVLNYLKPWGCAAFVTSQNQEFGKLSAPGKKCI 1374
             TAA+ILN VP+K   KTPYELWTGR+P L +   WGC A          KL +      
Sbjct: 679  KTAAYILNRVPTKAAAKTPYELWTGRKPSLKHFHIWGCPAEARPYKPHEKKLDSKTVSSY 738

Query: 1373 FIRYSETSKGYVFLGEDTQGHVTEIEARNVRFLEDQYPMRGEVDKDIQLYEVDNLITADE 1194
            FI Y+E S+G+ F     +      +ARN+ F E++       +  + L  +D  +  D 
Sbjct: 739  FIGYAERSRGFKFYDPAIRN-----QARNIVFEEEEGSTIAFDNVQVSLPIIDQEVNLDP 793

Query: 1193 QGEDETFINPDSSNNGIGQIIDQSQPRK--SVRGHIPKRRFEIEGEINMTNALTEI---- 1032
            Q  D   + P  +N  I       QP++  S+R    +RR  I  +  +     E+    
Sbjct: 794  QPTD-NIVQPLIANEDIAPEEQTQQPQENMSLRRSTRERRNAISDDYIVYLQEREVESGM 852

Query: 1031 -SDEPKTFKEAISGSNTSKWMEAMKEELESMKKNKVWDLVDLPPNMRSIGNRWVLKIKKN 855
              D+P  F++A+  SN+ KW+EAM EE +SM+ NKVW+LV LP   + IG +W+ K K++
Sbjct: 853  MEDDPINFQQAMKSSNSQKWIEAMNEEYKSMQDNKVWELVPLPVGTKPIGCKWIFKTKRD 912

Query: 854  AEGNINKFKARLVAKGYTQKEGIDYEDTFSPVVRFASIHLLLSMVAHLDLEFYQIDVKTA 675
            + GN+ ++KARLVAKG+TQKEGID+++TFSP                             
Sbjct: 913  SNGNVERYKARLVAKGFTQKEGIDFKETFSP----------------------------R 944

Query: 674  FLNGELQEEIYMDQPTGFSIKGQEHKVCKLNRSIYDLKQTSRQWNLRFHEAMLQDKFEMV 495
            F NG++ E IYM QP  F  +  ++ VCKL +SIY LKQ SRQW  +FH+ ++   FE  
Sbjct: 945  FSNGDIDETIYMVQPENFVSEDSKNMVCKLTKSIYGLKQASRQWYFKFHQIIVSYGFEAN 1004

Query: 494  NEDHCVYVKTSKNGFVILSLYVDDILLAGNNKALINST*EWLSLNFEMKDMGEASYVLGV 315
              D CVY K S + ++ L LYVDDILLA N+ ++++ T  +LS +FEMKD+G+AS+VLG+
Sbjct: 1005 LMDECVYHKFSGSKYIFLVLYVDDILLATNDISILHDTKRFLSKHFEMKDLGDASFVLGI 1064

Query: 314  KITRDRPKRLLSLSQETYIKKVLERFNMTDCKQVDLPVSLGESLSS*MSPKNPTETQAMK 135
            +I RDR + +L LSQ TYI KVL+R+ M + K  D PV+ G+  S    PKN  E+Q M+
Sbjct: 1065 QIHRDRSRGILGLSQRTYIDKVLQRYGMQNSKPGDTPVAKGDKFSLNQCPKNSLESQEMQ 1124

Query: 134  NVPYSSAVGSLMYAMLCTRPDICYAVGLVSRFQTNPGVAHWKA 6
             +PY+SAVGSLMYA +CTRPDI Y VG++ R+ +NPG+ HW+A
Sbjct: 1125 KIPYASAVGSLMYAQVCTRPDIAYIVGMLGRYLSNPGMDHWRA 1167



 Score =  105 bits (261), Expect(2) = e-176
 Identities = 90/335 (26%), Positives = 147/335 (43%), Gaps = 20/335 (5%)
 Frame = -2

Query: 3085 SMTQHCTVMRNMVAELAQAGQVLSNEQQIQVVIRSLPKTWEQFRLILTHDDSITNFAQVQ 2906
            ++ ++   M ++ ++L      LS++  + +V+ SLP  + QF++            ++ 
Sbjct: 179  NVREYIMEMSHLASKLKALKLELSDDLLVHLVLISLPAQFNQFKVSYNCQKDKWTLNELI 238

Query: 2905 RKCELEEQRLLNEKRVVQTEANVVNSK-KRKAPWNXXXXXXXXXXXXKPNPQQKKPRKSI 2729
              C  EE+RL  +K      A+    K KRK   N               P+QKK +   
Sbjct: 239  SFCVQEEERLKQDKTESAHLASTSKDKGKRKNKDNKVAASN--------GPEQKKQK--- 287

Query: 2728 DMTSVECFRCHQMGHYARACPSP---EVSFTLSTVNVISTVMLSDSSQY-WIVDSAATDH 2561
                V CF C++ GH  + C       V   +    V S V L+  S+  W +DS AT H
Sbjct: 288  --VEVTCFFCNKPGHTKKECTKYAAWRVKKGMFLTLVCSEVNLASVSRNTWWLDSGATTH 345

Query: 2560 ISRDRSLFEDFRKLPQGTRRVHMGNQSVADVLGTGTCRLDFASGRSILIEEVLFVPSIRR 2381
            I         +RK     R +++G+    +V   G  RL   SG  + + +   VPS R+
Sbjct: 346  ICVSMQGCLSYRKPSDAERCIYVGDGQSVEVEAIGHFRLLLKSGYFLDLIDTFIVPSFRQ 405

Query: 2380 NLLSVLKLLQESYVFNFSQNSLEISLNNSLIGHAYLMNSFMTLHLAQ------------- 2240
            NL+SV  L +  Y  +F  N   +S+N++ +G   L+N +  L+L +             
Sbjct: 406  NLISVSVLDKSGYCCSFGNNKFTLSINSNAVGTG-LLNVYDNLYLLETVPSYNETLHVES 464

Query: 2239 --TEVFMSKMVGCQLWHARLGHIGHSRIDRLAGGG 2141
              T+  ++K     LWH RLGHI  SR++RL   G
Sbjct: 465  RGTKRKLNKDNSASLWHKRLGHISKSRVERLVSDG 499


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