BLASTX nr result

ID: Coptis25_contig00010856 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010856
         (762 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270003.1| PREDICTED: expansin-A13-like [Vitis vinifera]     412   e-113
ref|XP_002884363.1| ATEXPA13 [Arabidopsis lyrata subsp. lyrata] ...   398   e-109
ref|XP_004148906.1| PREDICTED: expansin-A13-like [Cucumis sativu...   397   e-108
ref|NP_566197.1| expansin A13 [Arabidopsis thaliana] gi|20138030...   393   e-107
gb|AAM67333.1| Alpha-expansin 13 precursor (At-EXP13) (AtEx13) (...   392   e-107

>ref|XP_002270003.1| PREDICTED: expansin-A13-like [Vitis vinifera]
          Length = 313

 Score =  412 bits (1060), Expect = e-113
 Identities = 189/240 (78%), Positives = 212/240 (88%)
 Frame = +1

Query: 22  SYTSPSSSNYLTEWKTARATFYAASDPRDAVAGACGYGDLVKRGFGMATVGLSTTLFERG 201
           S +S SSS  L+EW++ RAT+YAA+DPRDAV GACGYGDLVK G+GMATVGLS  LFERG
Sbjct: 75  SSSSSSSSATLSEWRSGRATYYAAADPRDAVGGACGYGDLVKSGYGMATVGLSEALFERG 134

Query: 202 QICGGCFELRCVDDLRWCHQGTSIIVTATNFCPPNYGLEGDGGGGHCNPPNKHFVLPIDA 381
           QICGGCFELRCVDDLRWC  GTSIIVTATNFC PNYG   DGGG HCNPPN HFVLPI+A
Sbjct: 135 QICGGCFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFPADGGG-HCNPPNNHFVLPIEA 193

Query: 382 FEKIAFWKASNMNVHYRRIKCVREGGVRFIIDGSGYFISVLISNVAGAGDVLAVKIKGSR 561
           FEKIA WKA+NM VHYRRIKC +EGGVRF +DGSG F+SVLISNV GAGD++ VK+KGSR
Sbjct: 194 FEKIAIWKAANMPVHYRRIKCRKEGGVRFSLDGSGIFLSVLISNVGGAGDIVGVKVKGSR 253

Query: 562 TGWLPMGRNWGQTWHVSADLKNQPLSFEVTTSDGVTVTSYNVAPKNWSFGQSFVGKQFQS 741
           TGWLPMGRNWGQ WH++ADLKNQPLSFE+T SDG+T+TSYNVAPK W+FGQ+F GKQF+S
Sbjct: 254 TGWLPMGRNWGQNWHLNADLKNQPLSFEITASDGITLTSYNVAPKGWNFGQTFEGKQFES 313


>ref|XP_002884363.1| ATEXPA13 [Arabidopsis lyrata subsp. lyrata]
           gi|297330203|gb|EFH60622.1| ATEXPA13 [Arabidopsis lyrata
           subsp. lyrata]
          Length = 266

 Score =  398 bits (1023), Expect = e-109
 Identities = 188/243 (77%), Positives = 210/243 (86%), Gaps = 3/243 (1%)
 Frame = +1

Query: 22  SYTSPSSSNY---LTEWKTARATFYAASDPRDAVAGACGYGDLVKRGFGMATVGLSTTLF 192
           S +SPSSS+     +EW+ ARAT+YAAS+PRDAV GACGYGDLVK G+GMATVGLS TLF
Sbjct: 24  STSSPSSSSVSSDASEWRPARATYYAASNPRDAVGGACGYGDLVKSGYGMATVGLSETLF 83

Query: 193 ERGQICGGCFELRCVDDLRWCHQGTSIIVTATNFCPPNYGLEGDGGGGHCNPPNKHFVLP 372
           ERGQICG CFELRCVDDLRWC  GTSIIVTATNFC PNYG + DGGG HCNPPNKHFVLP
Sbjct: 84  ERGQICGACFELRCVDDLRWCIPGTSIIVTATNFCAPNYGFDPDGGG-HCNPPNKHFVLP 142

Query: 373 IDAFEKIAFWKASNMNVHYRRIKCVREGGVRFIIDGSGYFISVLISNVAGAGDVLAVKIK 552
           I+AFEKIA WKA NM V YRRI C REG +RF +DG G FISVLI+NVAG+GDV AVKIK
Sbjct: 143 IEAFEKIAIWKAGNMPVQYRRINCRREGSMRFTVDGGGIFISVLITNVAGSGDVAAVKIK 202

Query: 553 GSRTGWLPMGRNWGQTWHVSADLKNQPLSFEVTTSDGVTVTSYNVAPKNWSFGQSFVGKQ 732
           GSRTGWLPMGRNWGQ WH++ADLKNQ LSFEVT+SD  TVTSYNV+PKNW++GQ+F GKQ
Sbjct: 203 GSRTGWLPMGRNWGQNWHINADLKNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQ 262

Query: 733 FQS 741
           F++
Sbjct: 263 FET 265


>ref|XP_004148906.1| PREDICTED: expansin-A13-like [Cucumis sativus]
           gi|449484934|ref|XP_004157021.1| PREDICTED:
           expansin-A13-like [Cucumis sativus]
          Length = 268

 Score =  397 bits (1019), Expect = e-108
 Identities = 182/240 (75%), Positives = 209/240 (87%)
 Frame = +1

Query: 22  SYTSPSSSNYLTEWKTARATFYAASDPRDAVAGACGYGDLVKRGFGMATVGLSTTLFERG 201
           S  SP SS  L++W++ARAT+YAASDPRDAV GACGYGDLVK G+GMATVGLS +LFERG
Sbjct: 30  SSPSPDSSPSLSDWRSARATYYAASDPRDAVGGACGYGDLVKAGYGMATVGLSESLFERG 89

Query: 202 QICGGCFELRCVDDLRWCHQGTSIIVTATNFCPPNYGLEGDGGGGHCNPPNKHFVLPIDA 381
           QICG CF+LRCV+DLRWC  GTSIIVT TNFC PNYG   +GGG HCNPPNKHFVLPI+A
Sbjct: 90  QICGACFQLRCVEDLRWCIPGTSIIVTVTNFCAPNYGFTAEGGG-HCNPPNKHFVLPIEA 148

Query: 382 FEKIAFWKASNMNVHYRRIKCVREGGVRFIIDGSGYFISVLISNVAGAGDVLAVKIKGSR 561
           FEKIA WKA NM V YRRIKC +EGG+R+ + G G ++SVLISNVAGAGDV AVKIKG+R
Sbjct: 149 FEKIAIWKAGNMPVQYRRIKCRKEGGIRYTVSGYGIYLSVLISNVAGAGDVSAVKIKGTR 208

Query: 562 TGWLPMGRNWGQTWHVSADLKNQPLSFEVTTSDGVTVTSYNVAPKNWSFGQSFVGKQFQS 741
           TGWLPMGRNWGQ WH++ADL +Q LSFEVT+SDGVT+TSYNVAPK+W+FGQ+F GKQF+S
Sbjct: 209 TGWLPMGRNWGQNWHINADLNHQALSFEVTSSDGVTITSYNVAPKDWNFGQTFEGKQFES 268


>ref|NP_566197.1| expansin A13 [Arabidopsis thaliana]
           gi|20138030|sp|Q9M9P0.2|EXP13_ARATH RecName:
           Full=Expansin-A13; Short=AtEXPA13; AltName:
           Full=Alpha-expansin-13; Short=At-EXP13; Short=AtEx13;
           AltName: Full=Ath-ExpAlpha-1.22; Flags: Precursor
           gi|16604575|gb|AAL24089.1| putative expansin precursor
           protein [Arabidopsis thaliana]
           gi|21281243|gb|AAM45038.1| putative expansin precursor
           protein [Arabidopsis thaliana]
           gi|332640393|gb|AEE73914.1| expansin A13 [Arabidopsis
           thaliana]
          Length = 266

 Score =  393 bits (1010), Expect = e-107
 Identities = 183/243 (75%), Positives = 210/243 (86%), Gaps = 3/243 (1%)
 Frame = +1

Query: 22  SYTSPSSSNY---LTEWKTARATFYAASDPRDAVAGACGYGDLVKRGFGMATVGLSTTLF 192
           S +SPSSS+     +EW+ ARAT+YAA++PRDAV GACGYGDLVK G+GMATVGLS TLF
Sbjct: 24  STSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLF 83

Query: 193 ERGQICGGCFELRCVDDLRWCHQGTSIIVTATNFCPPNYGLEGDGGGGHCNPPNKHFVLP 372
           ERGQICG CFELRCVDDLRWC  GTSII+TATNFC PNYG + DGGG HCNPPNKHFVLP
Sbjct: 84  ERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGG-HCNPPNKHFVLP 142

Query: 373 IDAFEKIAFWKASNMNVHYRRIKCVREGGVRFIIDGSGYFISVLISNVAGAGDVLAVKIK 552
           I+AFEKIA WKA NM V YRRI C +EG +RF +DG G FISVLI+NVAG+GD+ AVKIK
Sbjct: 143 IEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIK 202

Query: 553 GSRTGWLPMGRNWGQTWHVSADLKNQPLSFEVTTSDGVTVTSYNVAPKNWSFGQSFVGKQ 732
           GSRTGWLPMGRNWGQ WH++ADL+NQ LSFEVT+SD  TVTSYNV+PKNW++GQ+F GKQ
Sbjct: 203 GSRTGWLPMGRNWGQNWHINADLRNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQ 262

Query: 733 FQS 741
           F++
Sbjct: 263 FET 265


>gb|AAM67333.1| Alpha-expansin 13 precursor (At-EXP13) (AtEx13) (Ath-ExpAlpha-1.22)
           [Arabidopsis thaliana]
          Length = 266

 Score =  392 bits (1008), Expect = e-107
 Identities = 183/243 (75%), Positives = 209/243 (86%), Gaps = 3/243 (1%)
 Frame = +1

Query: 22  SYTSPSSSNY---LTEWKTARATFYAASDPRDAVAGACGYGDLVKRGFGMATVGLSTTLF 192
           S +SPSSS+     +EW+ ARAT+YAA++PRDAV GACGYGDLVK G+GMATVGLS TLF
Sbjct: 24  STSSPSSSSVSSDASEWRPARATYYAATNPRDAVGGACGYGDLVKSGYGMATVGLSETLF 83

Query: 193 ERGQICGGCFELRCVDDLRWCHQGTSIIVTATNFCPPNYGLEGDGGGGHCNPPNKHFVLP 372
           ERGQICG CFELRCVDDLRWC  GTSII+TATNFC PNYG + DGGG HCNPPNKHFVLP
Sbjct: 84  ERGQICGACFELRCVDDLRWCIPGTSIILTATNFCAPNYGFDPDGGG-HCNPPNKHFVLP 142

Query: 373 IDAFEKIAFWKASNMNVHYRRIKCVREGGVRFIIDGSGYFISVLISNVAGAGDVLAVKIK 552
           I+AFEKIA WKA NM V YRRI C +EG +RF +DG G FISVLI+NVAG+GD+ AVKIK
Sbjct: 143 IEAFEKIAIWKAGNMPVQYRRINCRKEGSMRFTVDGGGIFISVLITNVAGSGDIAAVKIK 202

Query: 553 GSRTGWLPMGRNWGQTWHVSADLKNQPLSFEVTTSDGVTVTSYNVAPKNWSFGQSFVGKQ 732
           GSRTGWLPMGRNWGQ WH++ADL NQ LSFEVT+SD  TVTSYNV+PKNW++GQ+F GKQ
Sbjct: 203 GSRTGWLPMGRNWGQNWHINADLSNQALSFEVTSSDRSTVTSYNVSPKNWNYGQTFEGKQ 262

Query: 733 FQS 741
           F++
Sbjct: 263 FET 265


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