BLASTX nr result
ID: Coptis25_contig00010806
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00010806
(1045 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Rici... 390 e-106
ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 382 e-104
ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-li... 382 e-104
emb|CBI21038.3| unnamed protein product [Vitis vinifera] 370 e-100
ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [V... 370 e-100
>ref|XP_002515520.1| RNA-dependent RNA polymerase, putative [Ricinus communis]
gi|223545464|gb|EEF46969.1| RNA-dependent RNA polymerase,
putative [Ricinus communis]
Length = 1203
Score = 390 bits (1001), Expect = e-106
Identities = 196/324 (60%), Positives = 238/324 (73%), Gaps = 21/324 (6%)
Frame = -2
Query: 1041 KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 886
KRSW PM Y A V ++DIIDFF KNMV+E LG I NAHVVHAD SE GA+D+
Sbjct: 883 KRSWLPMQYDAAEAKQLNRPVNHQDIIDFFAKNMVNENLGAICNAHVVHADLSEYGALDE 942
Query: 885 NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKVI- 709
NCI+LA+LAATAVDFP+TG+ VTMP HLKPK+YPDFM KED+QSY S+KILG+LYR+V
Sbjct: 943 NCIKLAELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEDYQSYNSNKILGRLYRQVKD 1002
Query: 708 -YSD-----------IQLSSAAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQ 565
Y+D +L+ GD+PYDKDLE+ GS+ +I DAW++KCSYDGQL L+ Q
Sbjct: 1003 DYNDDDDDDDDAATSSELNLVRGDIPYDKDLEVSGSSDYILDAWDQKCSYDGQLKGLLAQ 1062
Query: 564 YKVNGEDEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVD 385
YKV E+EVVTGHIWS+ K NSRKQG+LKERLK +YHSLK EF+ FE + D QLT D
Sbjct: 1063 YKVKREEEVVTGHIWSMPKCNSRKQGELKERLKQSYHSLKKEFRQVFEKMDSDFEQLTED 1122
Query: 384 AKNTVYEQKASAWYQVTYDPKWAMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIR 205
KN +YEQKASAWYQV Y PKW K++ ++EP+A A +LSFAWI A+YL RIKIR
Sbjct: 1123 EKNLLYEQKASAWYQVAYHPKWVNKSMELQEPDAAGC---ASMLSFAWIAADYLARIKIR 1179
Query: 204 CLGTKELDNQKPINTLAHYLAKKI 133
C G +D KP+N+L YLA +I
Sbjct: 1180 CRGFDGVDTSKPVNSLVKYLADRI 1203
>ref|XP_004160762.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
Length = 1197
Score = 382 bits (981), Expect = e-104
Identities = 184/319 (57%), Positives = 240/319 (75%), Gaps = 16/319 (5%)
Frame = -2
Query: 1041 KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 886
K+SW PM+Y+PA +T DI++FF KNM++E LGTI NAHVVHADRS+ GA+D+
Sbjct: 882 KKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDE 941
Query: 885 NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV-- 712
NCI+L++LAATAVDFP+TG+ VTMP HLKPK+YPDFM KE QSYKS KILG++YR++
Sbjct: 942 NCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRD 1001
Query: 711 ------IYSDIQLSSAAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNG 550
+ + +L+ GD+ YD DLE+ G+ FI +AW++KCSYDGQL+ L+GQYKVN
Sbjct: 1002 AYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNR 1061
Query: 549 EDEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTV 370
E+E+VTGHIWS+ KY SRKQG+LKE+LKH+Y +LK +F+ FENLG + QLT D +N +
Sbjct: 1062 EEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNAL 1121
Query: 369 YEQKASAWYQVTYDPKWAMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTK 190
YE+KASAWYQV Y P W K+L +REP+A E +LSF WI A+YL RIKI+C TK
Sbjct: 1122 YEKKASAWYQVAYHPTWLKKSLELREPDAPE---AVPMLSFPWIAADYLARIKIKCRRTK 1178
Query: 189 ELDNQKPINTLAHYLAKKI 133
D KPIN+LA YL+ ++
Sbjct: 1179 SFDPTKPINSLASYLSDRM 1197
>ref|XP_004138727.1| PREDICTED: RNA-dependent RNA polymerase 6-like [Cucumis sativus]
gi|316989907|gb|ADU77019.1| RNA-dependent RNA polymerase
6 [Cucumis sativus]
Length = 1197
Score = 382 bits (981), Expect = e-104
Identities = 184/319 (57%), Positives = 240/319 (75%), Gaps = 16/319 (5%)
Frame = -2
Query: 1041 KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 886
K+SW PM+Y+PA +T DI++FF KNM++E LGTI NAHVVHADRS+ GA+D+
Sbjct: 882 KKSWPPMEYAPAEVKTLQRKITRWDIMEFFAKNMINESLGTICNAHVVHADRSKHGALDE 941
Query: 885 NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV-- 712
NCI+L++LAATAVDFP+TG+ VTMP HLKPK+YPDFM KE QSYKS KILG++YR++
Sbjct: 942 NCIQLSELAATAVDFPKTGKLVTMPPHLKPKLYPDFMGKEATQSYKSTKILGKMYRRIRD 1001
Query: 711 ------IYSDIQLSSAAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNG 550
+ + +L+ GD+ YD DLE+ G+ FI +AW++KCSYDGQL+ L+GQYKVN
Sbjct: 1002 AYDDDDMITSRELNFTPGDVHYDVDLEVAGAEDFIAEAWDQKCSYDGQLSGLLGQYKVNR 1061
Query: 549 EDEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTV 370
E+E+VTGHIWS+ KY SRKQG+LKE+LKH+Y +LK +F+ FENLG + QLT D +N +
Sbjct: 1062 EEEIVTGHIWSMPKYVSRKQGELKEKLKHSYSTLKKDFRQVFENLGPEFEQLTCDERNAL 1121
Query: 369 YEQKASAWYQVTYDPKWAMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTK 190
YE+KASAWYQV Y P W K+L +REP+A E +LSF WI A+YL RIKI+C TK
Sbjct: 1122 YEKKASAWYQVAYHPTWLKKSLELREPDAPE---AVPMLSFPWIAADYLARIKIKCRRTK 1178
Query: 189 ELDNQKPINTLAHYLAKKI 133
D KPIN+LA YL+ ++
Sbjct: 1179 SFDPTKPINSLASYLSDRM 1197
>emb|CBI21038.3| unnamed protein product [Vitis vinifera]
Length = 1035
Score = 370 bits (951), Expect = e-100
Identities = 188/318 (59%), Positives = 232/318 (72%), Gaps = 15/318 (4%)
Frame = -2
Query: 1041 KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 886
K+SW PM Y A VT+ DIIDFF KNMV+E LG I NAHVVHADRSE GA+D+
Sbjct: 720 KQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDE 779
Query: 885 NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV-- 712
C+ LA+ AATAVDFP+TG+ VT+P +LKPK+YPDFM KE+FQ+Y+S+KILG++YR++
Sbjct: 780 ACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKD 839
Query: 711 -IYSDIQLSS----AAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGE 547
D+ SS A +P+D+DL +PGSA FI DAW KCSYDGQLN L+GQYKV E
Sbjct: 840 AYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKRE 899
Query: 546 DEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTVY 367
+EVVTGH+WS+ KY SRKQG+L ERLKHAY SLK EF+ FE + D QLT D KN +Y
Sbjct: 900 EEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLY 959
Query: 366 EQKASAWYQVTYDPKWAMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKE 187
EQKASAWYQVTY P W K+L ++ P +E +LSFAWI A+YL RIKIR GT
Sbjct: 960 EQKASAWYQVTYHPTWVKKSLELQNP--DEVFGERVMLSFAWITADYLARIKIRRKGTGN 1017
Query: 186 LDNQKPINTLAHYLAKKI 133
+D+ KPIN+LA +L +I
Sbjct: 1018 VDSSKPINSLARFLVDRI 1035
>ref|XP_002282647.1| PREDICTED: RNA-dependent RNA polymerase 6 [Vitis vinifera]
Length = 1197
Score = 370 bits (951), Expect = e-100
Identities = 188/318 (59%), Positives = 232/318 (72%), Gaps = 15/318 (4%)
Frame = -2
Query: 1041 KRSWKPMDYSPA--------VTNEDIIDFFVKNMVDEKLGTIFNAHVVHADRSEQGAMDK 886
K+SW PM Y A VT+ DIIDFF KNMV+E LG I NAHVVHADRSE GA+D+
Sbjct: 882 KQSWPPMQYDSAEAKALAREVTSLDIIDFFTKNMVNENLGAICNAHVVHADRSEYGALDE 941
Query: 885 NCIRLAKLAATAVDFPQTGRTVTMPQHLKPKVYPDFMEKEDFQSYKSDKILGQLYRKV-- 712
C+ LA+ AATAVDFP+TG+ VT+P +LKPK+YPDFM KE+FQ+Y+S+KILG++YR++
Sbjct: 942 ACLDLAERAATAVDFPKTGKLVTLPPYLKPKMYPDFMGKEEFQTYRSNKILGKMYRQIKD 1001
Query: 711 -IYSDIQLSS----AAGDLPYDKDLELPGSAQFIPDAWNKKCSYDGQLNALMGQYKVNGE 547
D+ SS A +P+D+DL +PGSA FI DAW KCSYDGQLN L+GQYKV E
Sbjct: 1002 AYNEDVSESSEQIFGADKVPFDEDLGIPGSADFINDAWIHKCSYDGQLNGLLGQYKVKRE 1061
Query: 546 DEVVTGHIWSLLKYNSRKQGDLKERLKHAYHSLKNEFKHAFENLGEDHRQLTVDAKNTVY 367
+EVVTGH+WS+ KY SRKQG+L ERLKHAY SLK EF+ FE + D QLT D KN +Y
Sbjct: 1062 EEVVTGHVWSMPKYKSRKQGELTERLKHAYSSLKKEFRQIFEKMNSDFDQLTDDEKNRLY 1121
Query: 366 EQKASAWYQVTYDPKWAMKALGMREPEAEEYRQPARLLSFAWIPAEYLVRIKIRCLGTKE 187
EQKASAWYQVTY P W K+L ++ P +E +LSFAWI A+YL RIKIR GT
Sbjct: 1122 EQKASAWYQVTYHPTWVKKSLELQNP--DEVFGERVMLSFAWITADYLARIKIRRKGTGN 1179
Query: 186 LDNQKPINTLAHYLAKKI 133
+D+ KPIN+LA +L +I
Sbjct: 1180 VDSSKPINSLARFLVDRI 1197