BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010792
         (1400 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002529848.1| DNA repair and recombination protein RAD26, ...   491   e-136
ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-...   478   e-132
ref|XP_003541362.1| PREDICTED: DNA repair and recombination prot...   476   e-132
ref|XP_002307656.1| chromatin remodeling complex subunit [Populu...   476   e-132
emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]   474   e-131

>ref|XP_002529848.1| DNA repair and recombination protein RAD26, putative [Ricinus
            communis] gi|223530676|gb|EEF32549.1| DNA repair and
            recombination protein RAD26, putative [Ricinus communis]
          Length = 1230

 Score =  491 bits (1263), Expect = e-136
 Identities = 261/402 (64%), Positives = 300/402 (74%), Gaps = 4/402 (0%)
 Frame = +1

Query: 1    IIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKN 180
            IIFDPDWNPSTDMQARERAWRIGQ RDVT+YRLITRGTIEEKVYHRQIYKHFLTNK+LKN
Sbjct: 834  IIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 893

Query: 181  PQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQDRNTTSSSAA 360
            PQQRRFFKARDMKDLFTL DD   G TETSNIFSQLS ++NVV   KE +D+      +A
Sbjct: 894  PQQRRFFKARDMKDLFTLNDDGGSGLTETSNIFSQLSEEVNVVGAKKEKEDKKKHYKGSA 953

Query: 361  IVSDDTEVGRGARSLVLEPS--TTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHD 534
              +DD  + +   S  + PS    KGKEK +  + E+DEETN+L+SL DA GIHSA+NHD
Sbjct: 954  SHADDAALDK-ENSPEIGPSHRKGKGKEKANHSDGEVDEETNILRSLIDAQGIHSAVNHD 1012

Query: 535  VIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSSVRK 714
             IMNAHDEEK RL+EQASQVAQRAAEALRQSRMLRS DS+SVPTWTG+SG AGAPSSVR+
Sbjct: 1013 AIMNAHDEEKTRLEEQASQVAQRAAEALRQSRMLRSHDSVSVPTWTGKSGTAGAPSSVRR 1072

Query: 715  KFGSTVNSKLXXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQEIAVGS 894
            KFGSTVNS+L              TS  N                   RIRG QE AVG+
Sbjct: 1073 KFGSTVNSQLIRSSDVSSNK----TSSMNGMGVGASAGKALSSAELLARIRGNQERAVGA 1128

Query: 895  GFEHQFDLASSSSNR--NKPSTTNKPSRSSYSTQPEILIRHICTFIQQNGGSTTSSSVVA 1068
            G E QF LAS+S+NR  ++ +  ++PS++    QPEILIR ICTFIQQ GG T S+++V 
Sbjct: 1129 GLEQQFGLASTSANRAGSENNGVSRPSKNLSGVQPEILIRKICTFIQQRGGITDSATIVN 1188

Query: 1069 HFKERIPSKDLALFKNLLMEIATLEKRPTGKLWVLKPEYQQQ 1194
            HFK+RI  KD+ LFKNLL EIATLEK P GK+WVLKPEY+QQ
Sbjct: 1189 HFKDRILEKDMPLFKNLLKEIATLEKDPNGKVWVLKPEYRQQ 1230


>ref|XP_002272543.1| PREDICTED: DNA excision repair protein ERCC-6-like [Vitis vinifera]
          Length = 1227

 Score =  478 bits (1231), Expect = e-132
 Identities = 260/405 (64%), Positives = 301/405 (74%), Gaps = 9/405 (2%)
 Frame = +1

Query: 1    IIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKN 180
            II+DPDWNPSTDMQARERAWRIGQTRDVT+YRLITRGTIEEKVY RQIYKHFLTNK+LKN
Sbjct: 832  IIYDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTNKILKN 891

Query: 181  PQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQDRNTT----S 348
            PQQ+RFFKARDMKDLF L DD    STETSNIFSQLS D+NVV  HK+SQD+  +    S
Sbjct: 892  PQQKRFFKARDMKDLFVLNDDGEDASTETSNIFSQLSEDVNVVGKHKDSQDKQKSIIPVS 951

Query: 349  SSAAIVSDDTEVGRGARSLVLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMN 528
            S A    D+        +  + PS +   EKDDQ ++E+D+ETN+L+SLFDAH +HSA+N
Sbjct: 952  SHACGAVDE------GNNSTIGPSRSGENEKDDQ-SDEMDKETNILRSLFDAHRLHSAVN 1004

Query: 529  HDVIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSSV 708
            HD IMNAH +EKMRL+E+AS+VA+RA+EALRQS+MLRSR+SISVPTWTGRSGAAGAPSSV
Sbjct: 1005 HDAIMNAHGDEKMRLEEEASRVAKRASEALRQSQMLRSRESISVPTWTGRSGAAGAPSSV 1064

Query: 709  RKKFGSTVNSKLXXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQEIAV 888
             +KFGSTV+S+L               SKPN                   RIRG QE A 
Sbjct: 1065 SRKFGSTVSSQLINRSKSSEESSSNGMSKPNGIAAGASAGKALSSAELLARIRGNQERAT 1124

Query: 889  GSGFEHQFDLASSSSNRNKPSTTNKP--SRSSY---STQPEILIRHICTFIQQNGGSTTS 1053
              G EHQ  L SSS+NR + ST + P  SRS++   S QPE+LIR ICTFIQQ GGST S
Sbjct: 1125 DDGLEHQ--LGSSSANRAR-STDSGPSSSRSTHNLSSVQPEVLIRKICTFIQQKGGSTNS 1181

Query: 1054 SSVVAHFKERIPSKDLALFKNLLMEIATLEKRPTGKLWVLKPEYQ 1188
            +S+V HFK+RIPSKDL LFKNLL EIATLEK P G  WVLKPEY+
Sbjct: 1182 TSIVQHFKDRIPSKDLPLFKNLLKEIATLEKDPNGSSWVLKPEYR 1226


>ref|XP_003541362.1| PREDICTED: DNA repair and recombination protein RAD26-like [Glycine
            max]
          Length = 1210

 Score =  476 bits (1226), Expect = e-132
 Identities = 249/398 (62%), Positives = 296/398 (74%), Gaps = 2/398 (0%)
 Frame = +1

Query: 1    IIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKN 180
            IIFDPDWNPSTDMQARERAWRIGQ RDVT+YRLITRGTIEEKVYHRQIYKHFLTNK+LKN
Sbjct: 827  IIFDPDWNPSTDMQARERAWRIGQKRDVTVYRLITRGTIEEKVYHRQIYKHFLTNKILKN 886

Query: 181  PQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQDRNTTSSSAA 360
            PQQ+RFFKARDMKDLFTL  D   GSTETSNIFSQ+S ++NV+ T+KE++D+   S +A 
Sbjct: 887  PQQKRFFKARDMKDLFTLNVDGETGSTETSNIFSQISEEVNVIGTYKENKDKYKHSQTAE 946

Query: 361  IVSDDTEVGRGARSLVLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVI 540
            +VS+D  VG   +S               ++   + EETN+L+SLFDA+GIHSAMNHD+I
Sbjct: 947  LVSEDVAVGNDDKS---------------ERGNGVGEETNILKSLFDANGIHSAMNHDLI 991

Query: 541  MNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSSVRKKF 720
            MNAHDEEK+RL+EQASQVAQRAAEALRQSRMLRS DS+SVPTWTGRSG AGAPSSV++KF
Sbjct: 992  MNAHDEEKIRLEEQASQVAQRAAEALRQSRMLRSHDSVSVPTWTGRSGTAGAPSSVKRKF 1051

Query: 721  GSTVNSKLXXXXXXXXXXXXXLTSKPN-XXXXXXXXXXXXXXXXXXXRIRGTQEIAVGSG 897
            GSTVN +L              T+K N                    +IRG QE A+G+G
Sbjct: 1052 GSTVNPQLVNNSKASDELPNKGTNKINGFAAAGASAGKALSSAELLAQIRGNQEKAIGAG 1111

Query: 898  FEHQFDLASSSSNRNKP-STTNKPSRSSYSTQPEILIRHICTFIQQNGGSTTSSSVVAHF 1074
             EHQF ++SSS+N+ +     +  +  + S QPE+LIR ICTFIQQ GGS+ S+S+V +F
Sbjct: 1112 LEHQFGVSSSSTNQPRSGDVRSSRATENSSVQPEVLIRKICTFIQQRGGSSDSASIVQYF 1171

Query: 1075 KERIPSKDLALFKNLLMEIATLEKRPTGKLWVLKPEYQ 1188
            K+RIPSKDLALFKNLL EIATL K   G  WVLKP+YQ
Sbjct: 1172 KDRIPSKDLALFKNLLKEIATLHKGSNGSYWVLKPDYQ 1209


>ref|XP_002307656.1| chromatin remodeling complex subunit [Populus trichocarpa]
            gi|222857105|gb|EEE94652.1| chromatin remodeling complex
            subunit [Populus trichocarpa]
          Length = 1206

 Score =  476 bits (1224), Expect = e-132
 Identities = 258/398 (64%), Positives = 289/398 (72%), Gaps = 2/398 (0%)
 Frame = +1

Query: 1    IIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKN 180
            IIFDPDWNPSTDMQARERAWRIGQ +DVT+YRLIT GTIEEKVYHRQIYKHFLTNK+LKN
Sbjct: 830  IIFDPDWNPSTDMQARERAWRIGQKKDVTVYRLITGGTIEEKVYHRQIYKHFLTNKILKN 889

Query: 181  PQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQDRNTTSSSAA 360
            PQQRRFF+ARDMKDLFTL DD  GGSTETSNIFSQLS D+NVV T KE   +   +   A
Sbjct: 890  PQQRRFFRARDMKDLFTLNDDGEGGSTETSNIFSQLSEDVNVVGTKKEKLKKRKKNKGIA 949

Query: 361  IVSDDTEVGRGARSLVLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMNHDVI 540
              +DD                   KEK D  + E+DEETN+L+SLFDA+GIHSA+NHDVI
Sbjct: 950  QHADDAI-----------------KEKADCSDGEVDEETNILKSLFDANGIHSAVNHDVI 992

Query: 541  MNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSSVRKKF 720
            MNAHD EKMRL+EQASQVAQRAAEALRQSRMLRSRDSISVPTWTG+SG AGAPSSVR+KF
Sbjct: 993  MNAHDGEKMRLEEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGKSGTAGAPSSVRQKF 1052

Query: 721  GSTVNSKLXXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQEIAVGSGF 900
            GSTVNS+L             L                        RIRG QE AVG+G 
Sbjct: 1053 GSTVNSQLIKSSDSSSSNKSNL----KGIAAGTSAGKALSSAELLARIRGNQERAVGAGL 1108

Query: 901  EHQFDLASSS--SNRNKPSTTNKPSRSSYSTQPEILIRHICTFIQQNGGSTTSSSVVAHF 1074
            + QF  ASSS  S  ++ S  +KP ++  S QPEILIR ICTFIQ+ GGS+ SSS+V HF
Sbjct: 1109 DQQFGFASSSGTSAMSENSGASKPPQTLSSVQPEILIRQICTFIQRRGGSSDSSSIVQHF 1168

Query: 1075 KERIPSKDLALFKNLLMEIATLEKRPTGKLWVLKPEYQ 1188
            K+RIPSKDL LFKNLL EIA+L +   GK WVLKPEYQ
Sbjct: 1169 KDRIPSKDLPLFKNLLKEIASLREDANGKQWVLKPEYQ 1206


>emb|CAN67815.1| hypothetical protein VITISV_002502 [Vitis vinifera]
          Length = 1249

 Score =  474 bits (1221), Expect = e-131
 Identities = 257/405 (63%), Positives = 301/405 (74%), Gaps = 9/405 (2%)
 Frame = +1

Query: 1    IIFDPDWNPSTDMQARERAWRIGQTRDVTIYRLITRGTIEEKVYHRQIYKHFLTNKVLKN 180
            II+DPDWNPSTDMQARERAWRIGQTRDVT+YRLITRGTIEEKVY RQIYKHFLTNK+LKN
Sbjct: 854  IIYDPDWNPSTDMQARERAWRIGQTRDVTVYRLITRGTIEEKVYQRQIYKHFLTNKILKN 913

Query: 181  PQQRRFFKARDMKDLFTLQDDAVGGSTETSNIFSQLSGDINVVQTHKESQDRNTT----S 348
            PQQ+RFFKARDMKDLF L DD    STETSNIFSQLS D+NVV  HK++QD+  +    S
Sbjct: 914  PQQKRFFKARDMKDLFVLNDDGEDASTETSNIFSQLSEDVNVVGKHKDNQDKQKSIIPVS 973

Query: 349  SSAAIVSDDTEVGRGARSLVLEPSTTKGKEKDDQKNEELDEETNVLQSLFDAHGIHSAMN 528
            S A    D+     G  S +   S+  G+ + D +++E+D+ETN+L+SLFDAH +HSA+N
Sbjct: 974  SHACGAVDE-----GNNSTI--GSSRSGENEKDDQSDEMDKETNILRSLFDAHRLHSAVN 1026

Query: 529  HDVIMNAHDEEKMRLDEQASQVAQRAAEALRQSRMLRSRDSISVPTWTGRSGAAGAPSSV 708
            HD IMNAH +EKMRL+E+AS+VA+RA+EALRQS+MLRSR+SISVPTWTGRSGAAGAPSSV
Sbjct: 1027 HDAIMNAHGDEKMRLEEEASRVAKRASEALRQSQMLRSRESISVPTWTGRSGAAGAPSSV 1086

Query: 709  RKKFGSTVNSKLXXXXXXXXXXXXXLTSKPNXXXXXXXXXXXXXXXXXXXRIRGTQEIAV 888
             +KFGSTV+S+L               SKPN                   RIRG QE A 
Sbjct: 1087 SRKFGSTVSSQLINRSKSSEESSSNGMSKPNGIAAGASAGKALSSAELLARIRGNQERAT 1146

Query: 889  GSGFEHQFDLASSSSNRNKPSTTNKP--SRSSY---STQPEILIRHICTFIQQNGGSTTS 1053
              G EHQ  L SSS+NR + ST + P  SRS++   S QPE+LIR ICTFIQQ GGST S
Sbjct: 1147 DDGLEHQ--LGSSSANRAR-STDSGPSSSRSTHNLSSVQPEVLIRKICTFIQQKGGSTNS 1203

Query: 1054 SSVVAHFKERIPSKDLALFKNLLMEIATLEKRPTGKLWVLKPEYQ 1188
            +S+V HFK+RIPSKDL LFKNLL EIATLEK P G  WVLKPEY+
Sbjct: 1204 TSIVQHFKDRIPSKDLPLFKNLLKEIATLEKDPNGSSWVLKPEYR 1248