BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010782
         (1597 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D sub...   323   8e-86
ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D sub...   322   2e-85
emb|CBI21137.3| unnamed protein product [Vitis vinifera]              321   4e-85
ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D sub...   321   4e-85
ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putativ...   312   1e-82

>ref|XP_004157128.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1031

 Score =  323 bits (828), Expect = 8e-86
 Identities = 152/288 (52%), Positives = 212/288 (73%), Gaps = 3/288 (1%)
 Frame = -3

Query: 866 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 687
           L   C+++S +FF +YGL+SHQI+SYNDF++NG+QK FD  G+I V+PGYDPSKKG DG 
Sbjct: 48  LKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKG-DGE 106

Query: 686 WRRAKVKFGKVKLEKPMFWSND-SGKALKFLPRHARLQHMTYSSRMKVEIDFEVFKLENK 510
           WR A VKFGKV L+KP FW    SGK    LPRHARLQ+MTYSSRMK+ I  E++  +  
Sbjct: 107 WRYATVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLV 166

Query: 509 SSDKFKTGKETYTQKVGI--SEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFV 336
           SSDKFKTGK+ Y  K  +  + + ++V IGR+PVMV S+LCWM  ++K DCEFD GGYF+
Sbjct: 167 SSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDEQKRDCEFDRGGYFL 226

Query: 335 VKGAEKAFVAQERISLKRLWVFDQPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKV 156
           +KGAEK F+AQE+I L+RLW+ +   W ++YR+E++R R+ +++ E S SE +   + KV
Sbjct: 227 IKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSE-DLKSKEKV 285

Query: 155 LNVHFLGCTIPLWVFLFALGMPSDKEIIEMIDCNLSDESSVKLLLSTI 12
           LNV+FL   +P+W+  FALG+ SDKEI+++ID    D + + +L +++
Sbjct: 286 LNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASV 333


>ref|XP_004145500.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Cucumis
           sativus]
          Length = 1197

 Score =  322 bits (825), Expect = 2e-85
 Identities = 152/288 (52%), Positives = 211/288 (73%), Gaps = 3/288 (1%)
 Frame = -3

Query: 866 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 687
           L   C+++S +FF +YGL+SHQI+SYNDF++NG+QK FD  G+I V+PGYDPSKKG DG 
Sbjct: 48  LKDFCKKSSMAFFNQYGLISHQINSYNDFIKNGIQKAFDFFGDILVQPGYDPSKKG-DGE 106

Query: 686 WRRAKVKFGKVKLEKPMFWSND-SGKALKFLPRHARLQHMTYSSRMKVEIDFEVFKLENK 510
           WR A VKFGKV L+KP FW    SGK    LPRHARLQ+MTYSSRMK+ I  E++  +  
Sbjct: 107 WRYATVKFGKVTLDKPKFWGGAASGKEYNMLPRHARLQNMTYSSRMKINISLEIYTQKLV 166

Query: 509 SSDKFKTGKETYTQKVGI--SEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFV 336
           SSDKFKTGK+ Y  K  +  + + ++V IGR+PVMV S+LCWM   +K DCEFD GGYF+
Sbjct: 167 SSDKFKTGKDQYVDKEPVEGASDNRDVFIGRLPVMVNSDLCWMKDGQKRDCEFDRGGYFL 226

Query: 335 VKGAEKAFVAQERISLKRLWVFDQPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKV 156
           +KGAEK F+AQE+I L+RLW+ +   W ++YR+E++R R+ +++ E S SE +   + KV
Sbjct: 227 IKGAEKIFIAQEQICLRRLWISNVQGWTVAYRSEVKRNRLIIRLVENSKSE-DLKSKEKV 285

Query: 155 LNVHFLGCTIPLWVFLFALGMPSDKEIIEMIDCNLSDESSVKLLLSTI 12
           LNV+FL   +P+W+  FALG+ SDKEI+++ID    D + + +L +++
Sbjct: 286 LNVYFLSTEVPVWILFFALGVSSDKEIVDLIDYGRDDPTVLNILFASV 333


>emb|CBI21137.3| unnamed protein product [Vitis vinifera]
          Length = 1220

 Score =  321 bits (822), Expect = 4e-85
 Identities = 153/291 (52%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
 Frame = -3

Query: 866 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 687
           L   C++ + SFF EYGL+ HQI+S+NDF++NG+Q+VFD  GEI VEPGYDPSK+G +G 
Sbjct: 82  LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRG-EGD 140

Query: 686 WRRAKVKFGKVKLEKPMFWSNDSG--KALKFLPRHARLQHMTYSSRMKVEIDFEVFKLEN 513
           WR A V+FGKV LE+P  W+ +S   ++L FLPRHARLQ+MTYSSRMK ++ F+V+  + 
Sbjct: 141 WRYASVRFGKVTLERPRVWAGESDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKL 200

Query: 512 KSSDKFKTGKET-YTQKVGISEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFV 336
             SDK+KTGK+  Y +K  I E+ ++++IGRIPVMV S LCWMNG E+ DCE+DHGGYF+
Sbjct: 201 VRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFL 260

Query: 335 VKGAEKAFVAQERISLKRLWVFDQPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKV 156
           +KGAEK F+AQE+I LKRLWV   P W ++YR   +R+RV +K+E     +  +    KV
Sbjct: 261 IKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLE--PPKDENNRGGEKV 318

Query: 155 LNVHFLGCTIPLWVFLFALGMPSDKEIIEMIDCNLSDESSVKLLLSTISYA 3
           L V+F    IP+W+  FALG  SDKE++++ID N+ D     +L+++I  A
Sbjct: 319 LTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEA 369


>ref|XP_002283296.1| PREDICTED: DNA-directed RNA polymerase D subunit 2a-like [Vitis
           vinifera]
          Length = 1198

 Score =  321 bits (822), Expect = 4e-85
 Identities = 153/291 (52%), Positives = 211/291 (72%), Gaps = 3/291 (1%)
 Frame = -3

Query: 866 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 687
           L   C++ + SFF EYGL+ HQI+S+NDF++NG+Q+VFD  GEI VEPGYDPSK+G +G 
Sbjct: 46  LKTFCKKVAVSFFNEYGLIQHQINSFNDFIKNGIQRVFDSFGEIPVEPGYDPSKRG-EGD 104

Query: 686 WRRAKVKFGKVKLEKPMFWSNDSG--KALKFLPRHARLQHMTYSSRMKVEIDFEVFKLEN 513
           WR A V+FGKV LE+P  W+ +S   ++L FLPRHARLQ+MTYSSRMK ++ F+V+  + 
Sbjct: 105 WRYASVRFGKVTLERPRVWAGESDGKESLNFLPRHARLQNMTYSSRMKAQVHFQVYTQKL 164

Query: 512 KSSDKFKTGKET-YTQKVGISEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFV 336
             SDK+KTGK+  Y +K  I E+ ++++IGRIPVMV S LCWMNG E+ DCE+DHGGYF+
Sbjct: 165 VRSDKYKTGKDNKYVEKKVIFEDNRDILIGRIPVMVKSELCWMNGVERGDCEYDHGGYFL 224

Query: 335 VKGAEKAFVAQERISLKRLWVFDQPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKV 156
           +KGAEK F+AQE+I LKRLWV   P W ++YR   +R+RV +K+E     +  +    KV
Sbjct: 225 IKGAEKTFIAQEQICLKRLWVSSNPTWMVAYRPIWKRKRVYVKLE--PPKDENNRGGEKV 282

Query: 155 LNVHFLGCTIPLWVFLFALGMPSDKEIIEMIDCNLSDESSVKLLLSTISYA 3
           L V+F    IP+W+  FALG  SDKE++++ID N+ D     +L+++I  A
Sbjct: 283 LTVYFSSTEIPIWILFFALGASSDKEVVDLIDFNIDDAGISNILVASIHEA 333


>ref|XP_002515428.1| DNA-directed RNA polymerase subunit, putative [Ricinus communis]
           gi|223545372|gb|EEF46877.1| DNA-directed RNA polymerase
           subunit, putative [Ricinus communis]
          Length = 1203

 Score =  312 bits (800), Expect = 1e-82
 Identities = 151/285 (52%), Positives = 200/285 (70%)
 Frame = -3

Query: 866 LSKLCREASRSFFKEYGLLSHQIHSYNDFVENGVQKVFDDIGEIDVEPGYDPSKKGGDGG 687
           L   C +A+  FF EYGL+SHQI+SYNDF+ NG+QK FD  GE+ VEPGYDPSKKG +  
Sbjct: 59  LKDFCNKAATLFFNEYGLISHQINSYNDFINNGIQKAFDSFGELVVEPGYDPSKKG-ENE 117

Query: 686 WRRAKVKFGKVKLEKPMFWSNDSGKALKFLPRHARLQHMTYSSRMKVEIDFEVFKLENKS 507
           WR A VKFGKV LEKP FWS       K LPRHARLQ+MTYSS+MKV +  EV+  +   
Sbjct: 118 WRYASVKFGKVALEKPTFWSGADEH--KMLPRHARLQNMTYSSKMKVNVSVEVYTRKVVR 175

Query: 506 SDKFKTGKETYTQKVGISEEKKEVVIGRIPVMVGSNLCWMNGKEKDDCEFDHGGYFVVKG 327
           SDKFKTGK+ Y  K  ++ + + + IG +PVMV S+LCWM   EK DC+FDHGGYF++KG
Sbjct: 176 SDKFKTGKDQYVDKEVLNTDNRNITIGSLPVMVKSDLCWMKTAEKGDCDFDHGGYFLIKG 235

Query: 326 AEKAFVAQERISLKRLWVFDQPDWNISYRTEIRRRRVDLKIEEVSASECEHLQRTKVLNV 147
           AEK F+AQE+I LKRLW+ +   W +SY++EI+R R+ +++  +SA E    ++ K L V
Sbjct: 236 AEKVFIAQEQICLKRLWISNIQGWTVSYKSEIKRNRLIVRLVGLSALEDVKAEK-KCLTV 294

Query: 146 HFLGCTIPLWVFLFALGMPSDKEIIEMIDCNLSDESSVKLLLSTI 12
           +FL   IPLW+  FALG+ SDKE+I++I    +D   V +  ++I
Sbjct: 295 YFLSTEIPLWILFFALGVTSDKEVIDLIGYGSNDARIVNIFFASI 339