BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010777
         (1306 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulga...   141   4e-31
gb|ABA98898.1| retrotransposon protein, putative, unclassified [...   122   2e-25
emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabid...   120   1e-24
gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japo...   114   4e-23
gb|ABN07997.1| contains similarity to reverse trancriptase , rel...   114   7e-23

>emb|CCA66044.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1355

 Score =  141 bits (355), Expect = 4e-31
 Identities = 119/428 (27%), Positives = 189/428 (44%), Gaps = 9/428 (2%)
 Frame = -2

Query: 1302 DILIWDENWIPSLDHRRPMGPNPNKPGLQYVSDLIKENSL-WDEPLIRSNFLPHEVHAIL 1126
            ++ IW++ W+  LD       +     L  VS+LI  + + W   LI + F   ++  IL
Sbjct: 935  NVRIWEDPWV--LDELGRFITSEKHGNLNMVSELIDFDRMEWKVSLIETVFNERDIKCIL 992

Query: 1125 AIKLPHNGSGCSDKLVWLSEKNGKFSVKAAYN-GLSSSLTPTHTSVMQPLWKHIWKIGAP 949
            +I  P +     D+L W   KN  +SVK AY  G   +L   H +     W  IW +   
Sbjct: 993  SI--PLSSLPLKDELTWAFTKNAHYSVKTAYMLGKGGNLDSFHQA-----WIDIWSMEVS 1045

Query: 948  HRVKLFLWKTMHNCLPVKEFLSVRNISSNNICPRCTSQPETVTHALLTCPFVSRVWFASS 769
             +VK FLW+   N LPV+  L  R++  +++CPR   +PE+  HA+  CPF+  +W  S 
Sbjct: 1046 PKVKHFLWRLGTNTLPVRSLLKHRHMLDDDLCPRGCGEPESQFHAIFGCPFIRDLWVDSG 1105

Query: 768  FSWRPEFWNHDISISEVVRNLKQCSPSKTAFISLLTDFALNAYFIWLSRNCFIFKGKEEY 589
                      D +++E + N      S     S+ T  A  A+ +W  RN  +F      
Sbjct: 1106 CD-NFRALTTDTAMTEALVN------SHGLDASVRTKGAFMAWVLWSERNSIVFNQSSTP 1158

Query: 588  IPVILAQARHSNTIIDRTPT------PFRAILIELSAKLHPLLSNGYLLLFSDASFYSSG 427
              ++LA+    + +++   T      P R      SA++        + L  DAS  S+G
Sbjct: 1159 PHILLARV---SRLVEEHGTYTARIYPNRNCCAIPSARVWAAPPPEVIKLNVDASLASAG 1215

Query: 426  HDAGLGFIAYNSHESTPFAGCDKVKVSXXXXXXXXAVFN-GLQASFNHGIKKVVVASDCL 250
               GL  IA +SH +  FA   KV+                L+    +G   ++V SDC 
Sbjct: 1216 W-VGLSVIARDSHGTVLFAAVRKVRAQWSAEIAEAKAIEMALRLGRRYGFAAIIVESDCQ 1274

Query: 249  SLVNALSVNLDNLSWTNSILVHDILKLVESFSSVIFVYIPRFCNTASHHLAAWGFLFGHN 70
             +VN LS     L+    I++H+I     +F SV++ ++ R  N+ +HHLA         
Sbjct: 1275 VVVNRLSKQALYLA-DLDIILHNIFSSCINFPSVLWSHVKRDANSVAHHLAKLTPFGIEQ 1333

Query: 69   FWTEDVPP 46
             W   VPP
Sbjct: 1334 IWENHVPP 1341


>gb|ABA98898.1| retrotransposon protein, putative, unclassified [Oryza sativa
            Japonica Group]
          Length = 1188

 Score =  122 bits (307), Expect = 2e-25
 Identities = 106/436 (24%), Positives = 180/436 (41%), Gaps = 32/436 (7%)
 Frame = -2

Query: 1299 ILIWDENWIPSLDHRRPMGPNPNKPGLQYVSDLIKENSLWDEPLIRSNFLPHEVHAILAI 1120
            I IW + W+P    RRP+ P  N   L++V+DL+ +N  WD  +I   F P +   I +I
Sbjct: 746  IKIWRDPWLPRDFSRRPITPKGNCR-LKWVADLLDQNGSWDRDVISQLFWPLDGEIIKSI 804

Query: 1119 KLPHNGSGCSDKLVWLSEKNGKFSVKAAYN--------GLSSSLTPTHTSVMQPLWKHIW 964
            +L        D + W  +K G+FS+++AY         G SSS +   T   + +W H+W
Sbjct: 805  RLSSRQD--EDFIAWYPDKMGQFSIRSAYMLAVQLANAGESSSSSGNDT---KKVWNHVW 859

Query: 963  KIGAPHRVKLFLWKTMHNCLPVKEFLSVRNISSNNICPRCTSQPETVTHALLTCPFVSRV 784
            K   P +VK+F W+ + NCLP       RN   +++C  C  +PE V HAL  CP   R 
Sbjct: 860  KCNIPQKVKVFSWRAISNCLPTMVNKKKRNPELSDVCSFCGLEPEDVAHALWRCPHARRY 919

Query: 783  WFASSFSWRPEFWNHDISISEVVRNLKQCSPSKTAFISLLTD-----FALNAYFIWLSRN 619
            W         +  + ++ +  ++    + S     F+  +++     F ++ + IW +RN
Sbjct: 920  W---------DLMSSEMQVQRILYGSGEGSDWILDFLESISEDDRPVFLMSLWRIWYTRN 970

Query: 618  CFIFKGKEEYIPVILAQARHSNTIIDRTPTPFRAILIELSAKLHPL-------------- 481
                   ++  P +    R   + ++            L +  H +              
Sbjct: 971  EIT---HDKAAPPVEVSKRFVRSYVNSLKEIKARPNANLGSGKHVIGEDRPKCKKQSVLA 1027

Query: 480  ----LSNGYLLLFSDASFYSSGHDAGLGFIAYNSHESTPFAGCDKV-KVSXXXXXXXXAV 316
                  +G++ L  D S Y   +   +  I  NS     FA C  V +          A 
Sbjct: 1028 KWEKPPSGWMKLNVDGS-YQEDNIGEISAILRNSTGDVIFAACGFVEQCQSALEAEILAC 1086

Query: 315  FNGLQASFNHGIKKVVVASDCLSLVNALSVNLDNLSWTNSILVHDILKLVESFSSVIFVY 136
              G+  +    +  +++ SDC   +  L ++   L   N  LV +I  +V+    +    
Sbjct: 1087 KEGIGLALQWTLLPIIIESDCAEALQ-LILSEGKLRSVNKFLVREIQGMVKGAREMKLKK 1145

Query: 135  IPRFCNTASHHLAAWG 88
            + R CN  SH LA  G
Sbjct: 1146 VNRNCNHISHVLANKG 1161


>emb|CAB39638.1| RNA-directed DNA polymerase-like protein [Arabidopsis thaliana]
            gi|7267666|emb|CAB78094.1| RNA-directed DNA
            polymerase-like protein [Arabidopsis thaliana]
          Length = 1274

 Score =  120 bits (300), Expect = 1e-24
 Identities = 114/417 (27%), Positives = 185/417 (44%), Gaps = 16/417 (3%)
 Frame = -2

Query: 1299 ILIWDENWIPSLDHRRPMGPNPNKPGLQYVSDLIKEN-SLWDEPLIRSNFLPHEVHAILA 1123
            I +W E W+     + P+GP         V DLI  +   W+   IR + LP     I  
Sbjct: 867  INVWTEAWLSPSSPQTPIGPPTETNKDLSVHDLICHDVKSWNVEAIRKH-LPQYEDQIRK 925

Query: 1122 IKLPHNGSGCSDKLVWLSEKNGKFSVKAAYNGLSSSLTPTHTSVMQPLW-KHIWKIGAPH 946
            I +  N     D LVWL  K+G+++ K  Y    + L     S +   W K+IWKI    
Sbjct: 926  ITI--NALPLQDSLVWLPVKSGEYTTKTGY--ALAKLNSFPASQLDFNWQKNIWKIHTSP 981

Query: 945  RVKLFLWKTMHNCLPVKEFLSVRNISSNNICPRCTSQPETVTHALLTCPFVSRVWFASSF 766
            +VK FLWK M   LPV E LS RNI +   C RC  Q E+  H +L CP+  +VW  +  
Sbjct: 982  KVKHFLWKAMKGALPVGEALSRRNIEAEVTCKRC-GQTESSLHLMLLCPYAKKVWELAPV 1040

Query: 765  SWRPEFWNHDISISEVVRNLKQCSPSKTAFISLLTDFALNAYFIWLSRNCFIFKG---KE 595
             + P    H  S++ ++ + K+        +     +    + +W +RN  IF      E
Sbjct: 1041 LFNPSEATHS-SVALLLVDAKRMVALPPTGLGSAPLYPWLLWHLWKARNRLIFDNHSCSE 1099

Query: 594  EYI---PVILAQARHSNTIIDRTPTPFRAILIELSAKLHPLLSNGYLLLFSDASFYSSGH 424
            E +    ++ A+A     ++   P+P       +S    P  +      F DA++ +SG+
Sbjct: 1100 EGLVLKAILDARAWMEAQLLIHHPSP-------ISDYPSPTPNLKVTSCFVDAAWTTSGY 1152

Query: 423  DAGLGFIAYNSHE--------STPFAGCDKVKVSXXXXXXXXAVFNGLQASFNHGIKKVV 268
              G+G+   + ++        S+ F G   +  +        AV   L  + + G++++ 
Sbjct: 1153 -CGMGWFLQDPYKVKIKENQSSSSFVGSALMAET-------LAVHLALVDALSTGVRQLN 1204

Query: 267  VASDCLSLVNALSVNLDNLSWTNSILVHDILKLVESFSSVIFVYIPRFCNTASHHLA 97
            V SDC  L++ L+     +      L+HDI +L  SF+ + F +IPR  N  +  LA
Sbjct: 1205 VFSDCKELISLLNSGKSIVELRG--LLHDIRELSVSFTHLCFFFIPRLSNVVADSLA 1259


>gb|EEE69144.1| hypothetical protein OsJ_28268 [Oryza sativa Japonica Group]
          Length = 1256

 Score =  114 bits (286), Expect = 4e-23
 Identities = 115/442 (26%), Positives = 181/442 (40%), Gaps = 36/442 (8%)
 Frame = -2

Query: 1305 RDILIWDENWIPSLDHRRPMGPNPNKPGLQYVSDLIKENSLWDEPLIRSNFLPHEVHAIL 1126
            + + +W + WIP    RRP+    N   L++VSDLI ++  WD   I  +FLP +  AIL
Sbjct: 806  KSVRLWKDPWIPRSYSRRPISAKRNCR-LRWVSDLIDQSGSWDNDKISHHFLPMDAEAIL 864

Query: 1125 AIKLPHNGSGCSDKLVWLSEKNGKFSVKAAYN----------GLSSSLTPTHTSVMQPLW 976
             I L        D + W  ++ G+FSV++AY+          G SSS   +  +      
Sbjct: 865  NIHLSSRLE--EDFIAWHPDRLGRFSVRSAYHLAVALAQVNDGSSSSGNGSSRAC----- 917

Query: 975  KHIWKIGAPHRVKLFLWKTMHNCLPVKEFLSVRNISSNNICPRCTSQPETVTHALLTCPF 796
              +WK  AP +VK+F W+ + N L   E    R +  ++IC  C  + E V HAL  CP 
Sbjct: 918  NALWKCNAPQKVKIFAWRAITNSLTTLENKKKRKLEVSDICTICGVESEYVVHALFHCPH 977

Query: 795  VSRVWFASS--FSWRPEFWNHDISISEVVRNLKQCSPSKTAFISLLTDFALNAYFIWLSR 622
              ++W A S      P    H+     ++  L+Q  P     + ++       + IW +R
Sbjct: 978  ARQLWEAMSDDMQLNPLSNIHNGDSKVILDLLEQSQPEDQVMLLMV------LWRIWHTR 1031

Query: 621  NCFIFKGKEEYIPVILAQARHSNTII----------DRTPTPFRAILIELSAKLHPLLSN 472
            N  I  GK    P IL   R   + +             P   + ++  +  K H +  +
Sbjct: 1032 N-EIVHGKP--APGILVSKRFIESYVLSLAEIKQHPQANPEKGKHVVDVVLKKSHSIKRS 1088

Query: 471  -------------GYLLLFSDASFYSSGHDAGLGFIAYNSHESTPFAGCDKV-KVSXXXX 334
                         G + L  D SF  S    G+G +  N      FA C  V   S    
Sbjct: 1089 REPAPDKWSKPLPGSMKLNVDGSFQESEGKGGIGAVLRNCTGEVIFAACGHVDHCSSALE 1148

Query: 333  XXXXAVFNGLQASFNHGIKKVVVASDCLSLVNALSVNLDNLSWTNSILVHDILKLVESFS 154
                A  +GL  +    +  +V+ +DCL++V+ L  +        + L+ +I  L+    
Sbjct: 1149 MELLASRDGLALALQWTLLPIVIETDCLAMVH-LFRDATGAKSELAFLITEIDSLLVGNR 1207

Query: 153  SVIFVYIPRFCNTASHHLAAWG 88
             + F    R  N  SH LA  G
Sbjct: 1208 DISFNKCLRSQNLISHCLANKG 1229


>gb|ABN07997.1| contains similarity to reverse trancriptase , related [Medicago
            truncatula]
          Length = 407

 Score =  114 bits (284), Expect = 7e-23
 Identities = 62/183 (33%), Positives = 97/183 (53%), Gaps = 6/183 (3%)
 Frame = -2

Query: 1299 ILIWDENWIPSLDHRRPMGPNPNKPGLQYVSDLIK-ENSLWDEPLIRSNFLPHEVHAILA 1123
            I IW++NW+P+    + M        +  V DLI  + SLW++ ++   F+   +  I  
Sbjct: 212  INIWEDNWVPTYKGLKVMTTKGPNHFVNRVKDLINNQESLWNKVILEDQFISINIDQISH 271

Query: 1122 IKLPHNGSGCSDKLVWLSEKNGKFSVKAAYNGL----SSSLTPTHTSVMQPL-WKHIWKI 958
            I L +  +   D L+W+    G +SVK+ YN L    +  +  T TS  + L WK IW +
Sbjct: 272  IPLVNTTN--PDSLMWMHNPTGIYSVKSGYNTLRTWQTQQINNTSTSSDETLIWKKIWSL 329

Query: 957  GAPHRVKLFLWKTMHNCLPVKEFLSVRNISSNNICPRCTSQPETVTHALLTCPFVSRVWF 778
                R K+ LW+ +++ LPV+  L  R I    +CPRC S+ ET+TH  ++CP   RVWF
Sbjct: 330  HTIPRHKVLLWRILNDSLPVRSSLRKRGIQCYPLCPRCHSKTETITHLFMSCPLSKRVWF 389

Query: 777  ASS 769
             S+
Sbjct: 390  GSN 392