BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010688
         (196 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...    71   8e-11
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...    70   2e-10
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...    69   4e-10
ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containi...    66   3e-09

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score = 71.2 bits (173), Expect = 8e-11
 Identities = 38/64 (59%), Positives = 42/64 (65%)
 Frame = +3

Query: 3   VYDKLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKP 182
           +Y KL ELME I +LGYKE               + LWYHSEKLAVAFGVVS AAPPGK 
Sbjct: 478 IYAKLVELMEKIEELGYKE-----------GVKKETLWYHSEKLAVAFGVVSDAAPPGKA 526

Query: 183 LRVV 194
           LR+V
Sbjct: 527 LRIV 530


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score = 70.1 bits (170), Expect = 2e-10
 Identities = 36/64 (56%), Positives = 42/64 (65%)
 Frame = +3

Query: 3   VYDKLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKP 182
           +Y KL ELM  I KLGY++               +ALWYHSEKLAVAFGV+ G APPGKP
Sbjct: 465 IYQKLAELMGDIEKLGYEK-------------RKEALWYHSEKLAVAFGVLCGPAPPGKP 511

Query: 183 LRVV 194
           LR+V
Sbjct: 512 LRIV 515


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score = 69.7 bits (169), Expect = 2e-10
 Identities = 35/64 (54%), Positives = 43/64 (67%)
 Frame = +3

Query: 3   VYDKLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKP 182
           +Y KL ELM  I KLGY++               ++LWYHSEKLAVAFGV+ G+APPGKP
Sbjct: 465 IYQKLAELMGDIEKLGYEK-------------RKESLWYHSEKLAVAFGVLCGSAPPGKP 511

Query: 183 LRVV 194
           LR+V
Sbjct: 512 LRIV 515


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 32/61 (52%), Positives = 43/61 (70%)
 Frame = +3

Query: 12  KLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKPLRV 191
           KL+EL+  I KLGY  V    LH +   E  +AL YHSEKLA+A+G+++G APPGK LR+
Sbjct: 477 KLKELVGEIEKLGYVPVCSETLHKVGEKERKEALLYHSEKLALAYGILTGVAPPGKALRI 536

Query: 192 V 194
           +
Sbjct: 537 I 537


>ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
           chloroplastic-like [Glycine max]
          Length = 858

 Score = 66.2 bits (160), Expect = 3e-09
 Identities = 30/63 (47%), Positives = 45/63 (71%)
 Frame = +3

Query: 3   VYDKLEELMEAIRKLGYKEVSDAMLHNMDVAENSKALWYHSEKLAVAFGVVSGAAPPGKP 182
           +Y KL++L + + K GY  + +  +HN+D +E  K L++HSEKLAVAFG++  A PPG P
Sbjct: 751 IYAKLDQLGDLLSKAGYSSIVEIDIHNVDKSEKEKLLYHHSEKLAVAFGLI--ATPPGGP 808

Query: 183 LRV 191
           +RV
Sbjct: 809 IRV 811