BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010611
         (475 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002517454.1| conserved hypothetical protein [Ricinus comm...    69   4e-10
ref|XP_003533129.1| PREDICTED: F-box protein At5g49610-like [Gly...    65   7e-09
ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|2...    64   1e-08
ref|NP_201386.1| F-box protein [Arabidopsis thaliana] gi|7517065...    63   2e-08
ref|XP_003546303.1| PREDICTED: LOW QUALITY PROTEIN: F-box protei...    63   2e-08

>ref|XP_002517454.1| conserved hypothetical protein [Ricinus communis]
           gi|223543465|gb|EEF44996.1| conserved hypothetical
           protein [Ricinus communis]
          Length = 401

 Score = 68.9 bits (167), Expect = 4e-10
 Identities = 47/136 (34%), Positives = 65/136 (47%), Gaps = 3/136 (2%)
 Frame = +2

Query: 26  FSKLPSDIVLDIISRLPLKTISACKWVSKTWYALILNPRFAQIHFAKSIQANNSPSLLFR 205
           F KLP +I  DI+SR P+ ++  CK VS+ WY  + NP  A +H  ++ +  N   L F 
Sbjct: 19  FEKLPQEIYFDILSRQPIVSLLECKPVSRHWYTSVRNPLLANMHLNRAAE-QNLCLLFFS 77

Query: 206 VW-HNKFHLIDNECFD--NFETSATAYHIXXXXXXXXXXPACYEVVGTVNGLICFCPVDK 376
            W  +K  L+  E  +    +T  T +               +EVVG+ NGLIC      
Sbjct: 78  DWPRSKLELVQVEHPEPRKLKTLKTPFESVLSE---------FEVVGSCNGLICLY---- 124

Query: 377 DGYFSRSPYYICNPIT 424
             YFS  P YI NP T
Sbjct: 125 -DYFSDDPLYIYNPFT 139


>ref|XP_003533129.1| PREDICTED: F-box protein At5g49610-like [Glycine max]
          Length = 372

 Score = 64.7 bits (156), Expect = 7e-09
 Identities = 40/150 (26%), Positives = 68/150 (45%)
 Frame = +2

Query: 17  LNGFSKLPSDIVLDIISRLPLKTISACKWVSKTWYALILNPRFAQIHFAKSIQANNSPSL 196
           + G    P ++V+ I++RLP+K++   K V K WY L L+  F Q++   S     +P +
Sbjct: 15  VRGDGIFPDEVVIQILARLPVKSLFRFKTVCKLWYRLSLDKYFIQLYNEVS---RKNPMI 71

Query: 197 LFRVWHNKFHLIDNECFDNFETSATAYHIXXXXXXXXXXPACYEVVGTVNGLICFCPVDK 376
           L  +  +        C DN     + + +           +C       NGL+C   +  
Sbjct: 72  LVEISDSSESKTSLICVDNLR-GVSEFSLNFLNDRVKVRASC-------NGLLCCSSIPD 123

Query: 377 DGYFSRSPYYICNPITKDYVIPPKSPTNHI 466
            G F     Y+CNP+T++Y + PKS   H+
Sbjct: 124 KGVF-----YVCNPVTREYRLLPKSRERHV 148


>ref|XP_002317261.1| predicted protein [Populus trichocarpa] gi|222860326|gb|EEE97873.1|
           predicted protein [Populus trichocarpa]
          Length = 410

 Score = 63.9 bits (154), Expect = 1e-08
 Identities = 44/147 (29%), Positives = 76/147 (51%), Gaps = 8/147 (5%)
 Frame = +2

Query: 29  SKLPSDIVLDIISRLPLKTISACKWVSKTWYALILNPRFAQIHFAKS---IQANNSPSLL 199
           S LP DI  DI+ +LPLK+   C+ V +TW  L+ +  F+++   ++   +   + PS +
Sbjct: 26  SALPDDITADILLQLPLKSKIQCRCVCRTWRNLLSDSYFSEVQRERAQSMLVLRSPPSCV 85

Query: 200 FR----VWHNKFHLIDNECFDNFETSATAYHIXXXXXXXXXXPACY-EVVGTVNGLICFC 364
            R    +  N F+++D E       S +  +           P C+ E+VG+ NGL+C  
Sbjct: 86  SRKAAALAPNDFYVVDLE-------SGSVRNNVMKLNTKNNLPTCHVELVGSCNGLLCL- 137

Query: 365 PVDKDGYFSRSPYYICNPITKDYVIPP 445
             DK+   S+  +Y+CNP+T ++V  P
Sbjct: 138 -FDKN---SKKVFYLCNPVTGEHVRTP 160


>ref|NP_201386.1| F-box protein [Arabidopsis thaliana]
           gi|75170652|sp|Q9FHP3.1|FB300_ARATH RecName: Full=F-box
           protein At5g65850 gi|9759569|dbj|BAB11132.1| unnamed
           protein product [Arabidopsis thaliana]
           gi|50253490|gb|AAT71947.1| At5g65850 [Arabidopsis
           thaliana] gi|51972136|gb|AAU15172.1| At5g65850
           [Arabidopsis thaliana] gi|332010731|gb|AED98114.1| F-box
           protein [Arabidopsis thaliana]
          Length = 392

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 44/149 (29%), Positives = 70/149 (46%), Gaps = 2/149 (1%)
 Frame = +2

Query: 32  KLPSDIVLDIISRLPLKTISACKWVSKTWYALILNPRFAQIHFAKSIQANNSPSLLF--R 205
           ++P DI+++I+ RLP K+I+ C+ VSK W ++I    F ++   +S+   + P LLF  +
Sbjct: 34  QIPVDIIIEILLRLPAKSIATCRCVSKLWISVICRQDFTELFLTRSL---HRPQLLFCCK 90

Query: 206 VWHNKFHLIDNECFDNFETSATAYHIXXXXXXXXXXPACYEVVGTVNGLICFCPVDKDGY 385
              N F     +  + +E S+                 CY++   VNGLICF    K   
Sbjct: 91  KDGNLFFFSSPQLQNPYENSSA--------ISLKNFSLCYKISRPVNGLICF----KRKE 138

Query: 386 FSRSPYYICNPITKDYVIPPKSPTNHIEP 472
            + +   ICNP T   +  PK     I P
Sbjct: 139 MNETVTVICNPSTGHTLSLPKPMKTSIGP 167


>ref|XP_003546303.1| PREDICTED: LOW QUALITY PROTEIN: F-box protein At5g49610-like
           [Glycine max]
          Length = 359

 Score = 63.2 bits (152), Expect = 2e-08
 Identities = 39/150 (26%), Positives = 67/150 (44%)
 Frame = +2

Query: 17  LNGFSKLPSDIVLDIISRLPLKTISACKWVSKTWYALILNPRFAQIHFAKSIQANNSPSL 196
           + G    P ++V+ I++RLP+K++   K V K WY L L+  F Q+       +  +P +
Sbjct: 3   VRGDGIFPDEVVIQILARLPVKSLFRFKTVCKLWYRLSLDKYFIQLXQV----SRKNPMI 58

Query: 197 LFRVWHNKFHLIDNECFDNFETSATAYHIXXXXXXXXXXPACYEVVGTVNGLICFCPVDK 376
           L  +  +        C DN     + + +           +C       NGL+C   +  
Sbjct: 59  LVEISDSSESKTSLICVDNLR-GVSEFSLNFLNDRVKVRASC-------NGLLCCSSIPD 110

Query: 377 DGYFSRSPYYICNPITKDYVIPPKSPTNHI 466
            G F     Y+CNP+T++Y + PKS   H+
Sbjct: 111 KGVF-----YVCNPVTREYRLLPKSRERHV 135