BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010581
         (1873 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containi...   689   0.0  
emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]   689   0.0  
ref|XP_002519315.1| pentatricopeptide repeat-containing protein,...   679   0.0  
ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containi...   662   0.0  
ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|2...   657   0.0  

>ref|XP_002274904.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic [Vitis vinifera]
          Length = 498

 Score =  689 bits (1779), Expect = 0.0
 Identities = 345/470 (73%), Positives = 387/470 (82%), Gaps = 8/470 (1%)
 Frame = +2

Query: 62   TINTKPKQNHFR----VSCSYV---RAPPSSSPGTNRRGPSLGGDKKRHWKQGEFPGKLS 220
            T  TKP+ +H      V C++    R   SS+P ++    ++G  KKR WKQGEFPG  +
Sbjct: 25   TSATKPRDHHGSLCGVVRCAFASPARRKTSSTPSSSSSSSAVG--KKRLWKQGEFPGTSA 82

Query: 221  RS-PRRGPXXXXXXXXXXXXXXXXWVNTVTEALSDRILKKQWQDALQVFQMLKEQPFYSA 397
                R+ P                W NTV EALSD +LKKQW  AL+VF+ML+EQPFY  
Sbjct: 83   EGRSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQP 142

Query: 398  KQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTALLASYCRNNLVDEAFAVL 577
            K+GTYMKLLVLLGK  QP RA +LFD M+EE CEPT+ELYTALLASYCR+NL+DEAF++L
Sbjct: 143  KEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSIL 202

Query: 578  DEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYEEMAERLITPNTVTQNIVLNGYGK 757
            ++MKTLP+CQPDVFTYSTL+K CVD  RFELV+SLYEEM  R ITPNTVTQNIVL+GYGK
Sbjct: 203  NQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGK 262

Query: 758  AGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRSFGIEPETR 937
            AGKFD+MEKVLSGMLEST  KPDVWTMNTILSLFGNKGQIEIMEKWYEKFR+FGIEPETR
Sbjct: 263  AGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETR 322

Query: 938  TFNILIGAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFADVGDAKNMEYTFDQM 1117
            TFNILIGAYGKK +YDKMSSVMEYMRKL FPWTTSTYNNVIEAF+DVGDAKNMEYTFDQM
Sbjct: 323  TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQM 382

Query: 1118 RSERMRMDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLEIPENTSFYNAVLSACAKAEDL 1297
            R+E M+ DTKT CCLIRGY NAG+FHKVVSSVQLA K EIPENTSFYNAV+SACAKAEDL
Sbjct: 383  RAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDL 442

Query: 1298 IEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLEQENLNVIA 1447
            IEMERVF RMKDK C PDSTT+SIM+EAY+KEGMNDKIYDLEQE   ++A
Sbjct: 443  IEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMVA 492


>emb|CAN74604.1| hypothetical protein VITISV_025315 [Vitis vinifera]
          Length = 525

 Score =  689 bits (1777), Expect = 0.0
 Identities = 345/471 (73%), Positives = 387/471 (82%), Gaps = 8/471 (1%)
 Frame = +2

Query: 62   TINTKPKQNHFR----VSCSYV---RAPPSSSPGTNRRGPSLGGDKKRHWKQGEFPGKLS 220
            T  TKP+ +H      V C++    R   SS+P ++    ++G  KKR WKQGEFPG  +
Sbjct: 25   TSATKPRDHHGSLCGVVRCAFASPARRKTSSTPSSSSSSSAVG--KKRLWKQGEFPGTSA 82

Query: 221  RS-PRRGPXXXXXXXXXXXXXXXXWVNTVTEALSDRILKKQWQDALQVFQMLKEQPFYSA 397
                R+ P                W NTV EALSD +LKKQW  AL+VF+ML+EQPFY  
Sbjct: 83   EGRSRKTPIKNIKKKLDRKNDAKAWANTVAEALSDLVLKKQWLQALEVFEMLREQPFYQP 142

Query: 398  KQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTALLASYCRNNLVDEAFAVL 577
            K+GTYMKLLVLLGK  QP RA +LFD M+EE CEPT+ELYTALLASYCR+NL+DEAF++L
Sbjct: 143  KEGTYMKLLVLLGKSGQPLRAHELFDTMVEEGCEPTTELYTALLASYCRSNLIDEAFSIL 202

Query: 578  DEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYEEMAERLITPNTVTQNIVLNGYGK 757
            ++MKTLP+CQPDVFTYSTL+K CVD  RFELV+SLYEEM  R ITPNTVTQNIVL+GYGK
Sbjct: 203  NQMKTLPRCQPDVFTYSTLLKACVDASRFELVESLYEEMDVRSITPNTVTQNIVLSGYGK 262

Query: 758  AGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRSFGIEPETR 937
            AGKFD+MEKVLSGMLEST  KPDVWTMNTILSLFGNKGQIEIMEKWYEKFR+FGIEPETR
Sbjct: 263  AGKFDEMEKVLSGMLESTSSKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRNFGIEPETR 322

Query: 938  TFNILIGAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFADVGDAKNMEYTFDQM 1117
            TFNILIGAYGKK +YDKMSSVMEYMRKL FPWTTSTYNNVIEAF+DVGDAKNMEYTFDQM
Sbjct: 323  TFNILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFSDVGDAKNMEYTFDQM 382

Query: 1118 RSERMRMDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLEIPENTSFYNAVLSACAKAEDL 1297
            R+E M+ DTKT CCLIRGY NAG+FHKVVSSVQLA K EIPENTSFYNAV+SACAKAEDL
Sbjct: 383  RAEGMKADTKTFCCLIRGYANAGLFHKVVSSVQLAGKFEIPENTSFYNAVISACAKAEDL 442

Query: 1298 IEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLEQENLNVIAS 1450
            IEMERVF RMKDK C PDSTT+SIM+EAY+KEGMNDKIYDLEQE   ++ S
Sbjct: 443  IEMERVFNRMKDKHCQPDSTTYSIMVEAYKKEGMNDKIYDLEQERQRMMCS 493


>ref|XP_002519315.1| pentatricopeptide repeat-containing protein, putative [Ricinus
            communis] gi|223541630|gb|EEF43179.1| pentatricopeptide
            repeat-containing protein, putative [Ricinus communis]
          Length = 491

 Score =  679 bits (1751), Expect = 0.0
 Identities = 335/464 (72%), Positives = 382/464 (82%), Gaps = 4/464 (0%)
 Frame = +2

Query: 68   NTKPKQN---HFRVSCSYVRAPPSSSPGTNRRGPSLGGDKKRHWKQGEFPGKLSRSP-RR 235
            NTKP+ +   H  V C+Y  AP S+SP            KK+HWKQGEFPG    SP RR
Sbjct: 29   NTKPRSHQPKHTLVLCAY--APTSTSP------------KKKHWKQGEFPGFTETSPPRR 74

Query: 236  GPXXXXXXXXXXXXXXXXWVNTVTEALSDRILKKQWQDALQVFQMLKEQPFYSAKQGTYM 415
             P                WVNTVTEALSDRILKKQW  AL+VF+MLKEQPFY  K+GTYM
Sbjct: 75   TPIKNIKKKLDRKNKAKAWVNTVTEALSDRILKKQWFQALEVFEMLKEQPFYHPKEGTYM 134

Query: 416  KLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTALLASYCRNNLVDEAFAVLDEMKTL 595
            KLLVLLG+  QP RA +LFDEM+EE  EPT+ELYTALLA+YCRN+L DEAF++L +MKTL
Sbjct: 135  KLLVLLGRTGQPQRAHQLFDEMVEEGIEPTAELYTALLAAYCRNHLTDEAFSILQQMKTL 194

Query: 596  PQCQPDVFTYSTLIKVCVDECRFELVDSLYEEMAERLITPNTVTQNIVLNGYGKAGKFDQ 775
            P+C PDV+TYSTL+K CVD  RFELV++LY+EM ERLITPNTVTQNIVL+GYGKAG +DQ
Sbjct: 195  PRCLPDVYTYSTLLKACVDASRFELVEALYQEMGERLITPNTVTQNIVLSGYGKAGMYDQ 254

Query: 776  MEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRSFGIEPETRTFNILI 955
            ME+VLSGMLESTECKPDVWTMN ILS+FGNKGQI++MEKWYEKFRSFGIEPETRTFNILI
Sbjct: 255  MERVLSGMLESTECKPDVWTMNIILSVFGNKGQIDLMEKWYEKFRSFGIEPETRTFNILI 314

Query: 956  GAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFADVGDAKNMEYTFDQMRSERMR 1135
            GAYGKK +YDKMSSVME+MRKL FPWTTSTYNNVIEAFA  GD K+MEYTFDQMR+E M+
Sbjct: 315  GAYGKKRMYDKMSSVMEFMRKLQFPWTTSTYNNVIEAFAVAGDVKHMEYTFDQMRAEGMK 374

Query: 1136 MDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLEIPENTSFYNAVLSACAKAEDLIEMERV 1315
             DTKT CCLI GY NAG+FHKV+SSVQLA K EIPENT+FYNA++SACAKAEDL+EMERV
Sbjct: 375  ADTKTFCCLINGYANAGLFHKVISSVQLATKFEIPENTTFYNAIISACAKAEDLMEMERV 434

Query: 1316 FKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLEQENLNVIA 1447
            FKRMKD  C PDSTT+SIM+EAY++EGMNDK+Y LEQE   ++A
Sbjct: 435  FKRMKDNQCQPDSTTYSIMVEAYKREGMNDKVYYLEQEKQGMVA 478


>ref|XP_004138596.1| PREDICTED: pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic-like [Cucumis sativus]
            gi|449522692|ref|XP_004168360.1| PREDICTED:
            pentatricopeptide repeat-containing protein At3g06430,
            chloroplastic-like [Cucumis sativus]
          Length = 496

 Score =  662 bits (1708), Expect = 0.0
 Identities = 328/473 (69%), Positives = 381/473 (80%), Gaps = 1/473 (0%)
 Frame = +2

Query: 50   FPTTTINTKPKQNHFRVSCSYVRAPPSSSPGTNRRGPSLGGDKKRHWKQGEFPGKLSRSP 229
            F +++ ++    N   V C++  AP   SP  +    S    KKRHWKQGEFPG    S 
Sbjct: 28   FVSSSCSSSSHPNSRIVRCAFA-APTRKSPVPST---SSSPAKKRHWKQGEFPGTTETST 83

Query: 230  RR-GPXXXXXXXXXXXXXXXXWVNTVTEALSDRILKKQWQDALQVFQMLKEQPFYSAKQG 406
            RR  P                W NTVTEALSD I  K+W  AL+VF+ML+EQPFY  K+G
Sbjct: 84   RRRAPLKRVKKKLDRKNNAKAWANTVTEALSDHITNKRWLQALEVFEMLREQPFYEPKEG 143

Query: 407  TYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSELYTALLASYCRNNLVDEAFAVLDEM 586
            TYMKLLVLLG+  QP+RAR LFD M++E CEPT ELYTALLA+YCRNNL+D+AF+ L+ M
Sbjct: 144  TYMKLLVLLGRSGQPHRARLLFDTMVQERCEPTPELYTALLAAYCRNNLIDDAFSTLNLM 203

Query: 587  KTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYEEMAERLITPNTVTQNIVLNGYGKAGK 766
            KTLP+CQPDV+TYS LIK CVD+ RFE+V+SLYEEMAERLITPNTVTQNIVL+GYGK GK
Sbjct: 204  KTLPRCQPDVYTYSILIKACVDDSRFEIVESLYEEMAERLITPNTVTQNIVLSGYGKIGK 263

Query: 767  FDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQIEIMEKWYEKFRSFGIEPETRTFN 946
            +DQMEKVL GMLEST C+PDVWTMN ILS+FGNKG IE+ME+WYEKFR+FGIEPETRTFN
Sbjct: 264  YDQMEKVLIGMLESTTCRPDVWTMNIILSVFGNKGHIEMMERWYEKFRNFGIEPETRTFN 323

Query: 947  ILIGAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNNVIEAFADVGDAKNMEYTFDQMRSE 1126
            ILIGAYGKK +YDKMSSVMEYMRKL FPWTTSTYNNVIEAFADVGDAKNMEYTF+QMR+E
Sbjct: 324  ILIGAYGKKRMYDKMSSVMEYMRKLQFPWTTSTYNNVIEAFADVGDAKNMEYTFEQMRAE 383

Query: 1127 RMRMDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLEIPENTSFYNAVLSACAKAEDLIEM 1306
             MR DTKT CCLI GY NAG+FHKV+ SV+LA KLEIPENTSFYNAV+SACAKAEDL+EM
Sbjct: 384  GMRADTKTFCCLINGYANAGLFHKVIGSVKLAGKLEIPENTSFYNAVISACAKAEDLMEM 443

Query: 1307 ERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIYDLEQENLNVIASSLDSE 1465
            +RVFKRMKDK C PD+ T+SIM+EAY KEGMND+++ LE E   VI ++ ++E
Sbjct: 444  DRVFKRMKDKHCQPDNKTYSIMMEAYGKEGMNDRVHYLELEKKQVIDNASNNE 496


>ref|XP_002316075.1| predicted protein [Populus trichocarpa] gi|222865115|gb|EEF02246.1|
            predicted protein [Populus trichocarpa]
          Length = 434

 Score =  657 bits (1696), Expect = 0.0
 Identities = 314/430 (73%), Positives = 363/430 (84%), Gaps = 1/430 (0%)
 Frame = +2

Query: 158  PSLGGDKKRHWKQGEFPGKLSRS-PRRGPXXXXXXXXXXXXXXXXWVNTVTEALSDRILK 334
            PS    KK+HWKQGEFPG    S PRR                  WVNTV EAL+D +LK
Sbjct: 5    PSSTFPKKKHWKQGEFPGFTDASRPRRTAIKNIKKKLDRKSKAKAWVNTVAEALTDCVLK 64

Query: 335  KQWQDALQVFQMLKEQPFYSAKQGTYMKLLVLLGKCRQPYRARKLFDEMLEECCEPTSEL 514
            KQW  A+QVF+MLKEQPFY  K+ TYMKLLVLLG+C QP RA +LFDEM+EE  EPT+EL
Sbjct: 65   KQWLQAIQVFEMLKEQPFYQPKEATYMKLLVLLGRCGQPQRAHQLFDEMVEEGIEPTTEL 124

Query: 515  YTALLASYCRNNLVDEAFAVLDEMKTLPQCQPDVFTYSTLIKVCVDECRFELVDSLYEEM 694
            YTALLA+YCRNNL+DE F+++++MK+LP+CQPDV+TYSTL+K CVD  RFEL+D+LY+EM
Sbjct: 125  YTALLAAYCRNNLIDEGFSIINQMKSLPRCQPDVYTYSTLLKACVDASRFELIDTLYQEM 184

Query: 695  AERLITPNTVTQNIVLNGYGKAGKFDQMEKVLSGMLESTECKPDVWTMNTILSLFGNKGQ 874
             ERLI+PNTVTQN+VL+GYG+ G +DQME+VLS MLES  CKPDVWTMN ILS+FGN+GQ
Sbjct: 185  DERLISPNTVTQNVVLSGYGRVGMYDQMERVLSEMLESAACKPDVWTMNIILSVFGNEGQ 244

Query: 875  IEIMEKWYEKFRSFGIEPETRTFNILIGAYGKKHLYDKMSSVMEYMRKLSFPWTTSTYNN 1054
            I++ME+WYEKFR+FGIEPETRTFNILIGAYGKK +YDKMSSVMEYMRK+ FPWTTSTYNN
Sbjct: 245  IDLMERWYEKFRNFGIEPETRTFNILIGAYGKKRMYDKMSSVMEYMRKVQFPWTTSTYNN 304

Query: 1055 VIEAFADVGDAKNMEYTFDQMRSERMRMDTKTLCCLIRGYGNAGIFHKVVSSVQLAEKLE 1234
            VIEAFADVGDAKNMEY FDQMR+E M+ DTKT CCLI GY NAG+FHKV+SSVQLA K E
Sbjct: 305  VIEAFADVGDAKNMEYAFDQMRAESMKADTKTFCCLINGYANAGLFHKVISSVQLAAKFE 364

Query: 1235 IPENTSFYNAVLSACAKAEDLIEMERVFKRMKDKLCAPDSTTHSIMIEAYRKEGMNDKIY 1414
            IPENTSF+NAV+SACAKA+DL+EMERVFKRMKDK C PDS T+SIM+EAYRKEGMNDKIY
Sbjct: 365  IPENTSFFNAVISACAKADDLMEMERVFKRMKDKQCPPDSRTYSIMVEAYRKEGMNDKIY 424

Query: 1415 DLEQENLNVI 1444
             LEQE   +I
Sbjct: 425  YLEQEKQEMI 434