BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010513
         (869 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]      183   5e-44
ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arab...   168   2e-39
gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]      158   2e-36
ref|XP_002304323.1| predicted protein [Populus trichocarpa] gi|2...   157   3e-36
ref|XP_003629302.1| Major cold-shock protein [Medicago truncatul...   156   7e-36

>gb|ADE80751.1| cold shock domain protein 1 [Eutrema salsugineum]
          Length = 263

 Score =  183 bits (464), Expect = 5e-44
 Identities = 108/260 (41%), Positives = 126/260 (48%), Gaps = 45/260 (17%)
 Frame = +1

Query: 145 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 324
           +TG V WFN  KGYGFITPD+ D E+LFVHQS+I S+G+R+L+ G+SVEF V    DG K
Sbjct: 11  STGKVNWFNDSKGYGFITPDD-DGEELFVHQSAILSEGFRSLTVGDSVEFAVTQGTDG-K 68

Query: 325 TQAVNVLRKGKXXXXXXXIIE------------------------------------CYT 396
           T+AVNV   G        I                                      CYT
Sbjct: 69  TKAVNVTAPGGAPLHRKEISSRGNGARRGGSCYHCGEVGHMAKDCSSSDRGDRSSGGCYT 128

Query: 397 CSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKST-------AGE 555
           C   GH ARDC QK+      G    GA   CYNC   GH ARDC+ KS        +G 
Sbjct: 129 CGDTGHFARDCVQKSSGNGGSGGERGGAGGECYNCGNTGHFARDCVQKSVGNVGDRGSGG 188

Query: 556 GGRCYNCDGKGHIARECQVKL--GGCYNCGGPGHIARDCQEKXXXXXXXXXXXXXXXXXX 729
           GG CYNC G GH+AR+C  K   G CY CGG GH+ARDC  +                  
Sbjct: 189 GGVCYNCGGAGHMARDCPTKRQPGACYECGGTGHMARDCDRRGSGGGRGNAGGGG----- 243

Query: 730 XXRDGGCFNCGQHGHRARDC 789
               G CF CGQ GH AR+C
Sbjct: 244 ---GGNCFKCGQGGHFAREC 260



 Score = 67.8 bits (164), Expect = 3e-09
 Identities = 39/106 (36%), Positives = 43/106 (40%), Gaps = 30/106 (28%)
 Frame = +1

Query: 385 ECYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVK-------- 540
           ECY C   GH ARDC QK+   V D     G V  CYNC   GH+ARDC  K        
Sbjct: 159 ECYNCGNTGHFARDCVQKSVGNVGDRGSGGGGV--CYNCGGAGHMARDCPTKRQPGACYE 216

Query: 541 ----------------------STAGEGGRCYNCDGKGHIARECQV 612
                                 +  G GG C+ C   GH AREC V
Sbjct: 217 CGGTGHMARDCDRRGSGGGRGNAGGGGGGNCFKCGQGGHFARECSV 262


>ref|XP_002867041.1| hypothetical protein ARALYDRAFT_491032 [Arabidopsis lyrata subsp.
           lyrata] gi|297312877|gb|EFH43300.1| hypothetical protein
           ARALYDRAFT_491032 [Arabidopsis lyrata subsp. lyrata]
          Length = 257

 Score =  168 bits (425), Expect = 2e-39
 Identities = 105/264 (39%), Positives = 126/264 (47%), Gaps = 49/264 (18%)
 Frame = +1

Query: 145 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 324
           +TG V WFN  KGYGFITPD++ +E+LFVHQSSI S+GYR+L+EG+SVEF +   +DG K
Sbjct: 11  STGKVNWFNDSKGYGFITPDDR-SEELFVHQSSIVSEGYRSLAEGDSVEFAITQGSDG-K 68

Query: 325 TQAVNVLRKGKXXXXXXXIIE------------------------------------CYT 396
           T+AV V   G                                               CY 
Sbjct: 69  TKAVEVTALGGGALKKENNSRGNGARRGGGSGCYNCGELGHIGGGSGGGERGSRREGCYN 128

Query: 397 CSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDC-LVKSTAGE------ 555
           C   GH ARDC QK+         A      CYNC  IGH ARDC   K TAG       
Sbjct: 129 CGDAGHFARDCTQKSVGNGDQRGAAGAGKDGCYNCGDIGHFARDCGNQKVTAGSVRSGGG 188

Query: 556 GGRCYNCDGKGHIARECQVK---LGGCYNCGGPGHIARDCQEKXXXXXXXXXXXXXXXXX 726
            G CY C G GHIAREC  K     GCY CGG GH+ARDC ++                 
Sbjct: 189 SGSCYTCGGVGHIARECATKRQPSRGCYQCGGSGHLARDCDQRASGG------------- 235

Query: 727 XXXRDGG---CFNCGQHGHRARDC 789
               +GG   C++CG+ GH AR+C
Sbjct: 236 ----NGGGNKCYSCGKEGHFAREC 255



 Score = 71.6 bits (174), Expect = 2e-10
 Identities = 35/77 (45%), Positives = 45/77 (58%), Gaps = 2/77 (2%)
 Frame = +1

Query: 388 CYTCSQVGHIARDCPQKNKILVTDGVVANGAVIRCYNCKRIGHVARDCLVKSTAGEGG-- 561
           CYTC  VGHIAR+C  K +        + G    CY C   GH+ARDC  +++ G GG  
Sbjct: 192 CYTCGGVGHIARECATKRQ-------PSRG----CYQCGGSGHLARDCDQRASGGNGGGN 240

Query: 562 RCYNCDGKGHIARECQV 612
           +CY+C  +GH AREC V
Sbjct: 241 KCYSCGKEGHFARECSV 257


>gb|ADE80750.1| cold shock domain protein 3 [Eutrema salsugineum]
          Length = 295

 Score =  158 bits (399), Expect = 2e-36
 Identities = 96/245 (39%), Positives = 121/245 (49%), Gaps = 27/245 (11%)
 Frame = +1

Query: 145 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELANDGKK 324
           +TG V WF+  KGYGFITPD+   E LFVHQSSI SDG+R+L+ GESVE+ + L +DG K
Sbjct: 11  STGKVNWFSDGKGYGFITPDDGGDE-LFVHQSSIVSDGFRSLTVGESVEYAITLGSDG-K 68

Query: 325 TQAVNVLRKGKXXXXXXXIIE------CYTCSQVGHIARDCPQKNKILVTDGVVANGAVI 486
           T+AV V   G        I        C+ C ++GH+A+DC          G   +G   
Sbjct: 69  TKAVEVTAPGGGSLKNKEISSRGNGGGCFNCGEIGHMAKDCVGGKSF--GGGGRRSGGEG 126

Query: 487 RCYNCKRIGHVARDCLVKS-----TAGEGGRCYNCDGKGHIARECQVKLG---------- 621
            CYNC  +GH ARDC   +       G GG CYNC   GH+A++C+   G          
Sbjct: 127 SCYNCGNVGHFARDCRQNAGGNSVGGGGGGACYNCGEVGHMAKDCRGGSGGNRYGGGGRG 186

Query: 622 ----GCYNCGGPGHIARDCQEKXXXXXXXXXXXXXXXXXXXXRDGG--CFNCGQHGHRAR 783
               GCY CG  GH ARDC++                       GG  C+ CG  GH AR
Sbjct: 187 SGGEGCYMCGDVGHFARDCRQNVGGDVGGGG------------GGGNTCYTCGGFGHMAR 234

Query: 784 DCQEK 798
            C  K
Sbjct: 235 VCTSK 239


>ref|XP_002304323.1| predicted protein [Populus trichocarpa] gi|222841755|gb|EEE79302.1|
           predicted protein [Populus trichocarpa]
          Length = 225

 Score =  157 bits (397), Expect = 3e-36
 Identities = 96/238 (40%), Positives = 115/238 (48%), Gaps = 20/238 (8%)
 Frame = +1

Query: 145 ATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDG-YRTLSEGESVEFQVELANDGK 321
           +TG V  F+ KKG+GFI PD  D +DLFVH S+I SDG YRTL E + VEF + L  D  
Sbjct: 3   STGRVVRFSDKKGFGFIKPDVGD-KDLFVHHSAIKSDGGYRTLYEDDVVEFTILLTED-- 59

Query: 322 KTQAVNVLRKG----------------KXXXXXXXIIECYTCSQVGHIARDCPQKNKILV 453
           K QA+ V   G                +        + C+ C   GHIARDC   +    
Sbjct: 60  KYQAIEVTAPGGGPIKRRTTTSGGFSRRNNNNNNNGVGCFNCGNPGHIARDCNNNSSKSY 119

Query: 454 TDGVVAN---GAVIRCYNCKRIGHVARDCLVKSTAGEGGRCYNCDGKGHIARECQVKLGG 624
            +    N   GA   CY C   GH AR+C    T G    CY+C G GH+AR+C    G 
Sbjct: 120 NNYNNNNNNRGADFGCYKCGSSGHFAREC----TKGNNNGCYSCGGIGHVARDCPGGSGA 175

Query: 625 CYNCGGPGHIARDCQEKXXXXXXXXXXXXXXXXXXXXRDGGCFNCGQHGHRARDCQEK 798
           CYNCGG GH+ARDC                         GGCFNCG  GH ARDC E+
Sbjct: 176 CYNCGGYGHLARDCTS---------ARVTGGGRFGGGNSGGCFNCGNEGHFARDCPEQ 224


>ref|XP_003629302.1| Major cold-shock protein [Medicago truncatula]
           gi|355523324|gb|AET03778.1| Major cold-shock protein
           [Medicago truncatula]
          Length = 329

 Score =  156 bits (394), Expect = 7e-36
 Identities = 102/277 (36%), Positives = 126/277 (45%), Gaps = 55/277 (19%)
 Frame = +1

Query: 130 LVEMSATGIVKWFNGKKGYGFITPDNKDTEDLFVHQSSIDSDGYRTLSEGESVEFQVELA 309
           + E   +G+V+WFN  KG+GFI PD+ D+EDLFVHQS I S+G+R+LSEG+ VEF +   
Sbjct: 1   MAEERISGVVQWFNNTKGFGFIKPDD-DSEDLFVHQSDIRSEGFRSLSEGDRVEFTIADG 59

Query: 310 NDGKKTQAVNV-----------------------LRKGKXXXXXXXIIECYTCSQVGHIA 420
           ++GK T+AV+V                        R G+          CYTC   GHIA
Sbjct: 60  DNGK-TKAVDVTGPKGEPLQVRQDNHGGGGGGRGFRGGERRNGGGG---CYTCGDTGHIA 115

Query: 421 RDCPQKNKILVTDGVVANGAVIR---CYNCKRIGHVARDCLVKST---------AGEGGR 564
           RDC + ++    D     G   R   CY C    H ARDC+              G G  
Sbjct: 116 RDCDRSDRNDRNDRSGGGGGGDRDRACYTCGSFEHFARDCMRGGGNNNNGGGGYGGGGTS 175

Query: 565 CYNCDGKGHIARECQVKLGG------CYNCGGPGHIARDCQEK-----------XXXXXX 693
           CY C G GHIAR+C     G      CY CG  GHIARDC  +                 
Sbjct: 176 CYRCGGVGHIARDCATPSSGGGGGGACYKCGEVGHIARDCSNEGGRFDGGNGRYDDGNGR 235

Query: 694 XXXXXXXXXXXXXXRDGG---CFNCGQHGHRARDCQE 795
                          DGG   CFNCG+ GH ARDC E
Sbjct: 236 FGGGNRRFGSGGGGHDGGKGTCFNCGKAGHFARDCVE 272