BLASTX nr result

ID: Coptis25_contig00010511 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010511
         (203 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004166514.1| PREDICTED: LOW QUALITY PROTEIN: conserved ol...   117   1e-24
ref|XP_004140637.1| PREDICTED: conserved oligomeric Golgi comple...   117   1e-24
ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi comple...   115   5e-24
emb|CBI38713.3| unnamed protein product [Vitis vinifera]              115   5e-24
ref|XP_003626606.1| Conserved oligomeric Golgi complex subunit [...   108   3e-22

>ref|XP_004166514.1| PREDICTED: LOW QUALITY PROTEIN: conserved oligomeric Golgi complex
           subunit 4-like [Cucumis sativus]
          Length = 751

 Score =  117 bits (292), Expect = 1e-24
 Identities = 60/70 (85%), Positives = 62/70 (88%), Gaps = 3/70 (4%)
 Frame = -3

Query: 201 LLSNEYQEALQQKMMEPS---KLFLGGAGVQKTGTEIATALNNMDVSGEYVLKLRHEIVE 31
           LLSNEYQEALQQKM EP+   KLFLGG GVQKTGTEIATALNNMDVS EYVLKL+HEI E
Sbjct: 479 LLSNEYQEALQQKMREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEE 538

Query: 30  QCVEVFPAPA 1
           QC EVFPAPA
Sbjct: 539 QCAEVFPAPA 548


>ref|XP_004140637.1| PREDICTED: conserved oligomeric Golgi complex subunit 4-like
           [Cucumis sativus]
          Length = 751

 Score =  117 bits (292), Expect = 1e-24
 Identities = 60/70 (85%), Positives = 62/70 (88%), Gaps = 3/70 (4%)
 Frame = -3

Query: 201 LLSNEYQEALQQKMMEPS---KLFLGGAGVQKTGTEIATALNNMDVSGEYVLKLRHEIVE 31
           LLSNEYQEALQQKM EP+   KLFLGG GVQKTGTEIATALNNMDVS EYVLKL+HEI E
Sbjct: 479 LLSNEYQEALQQKMREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLKHEIEE 538

Query: 30  QCVEVFPAPA 1
           QC EVFPAPA
Sbjct: 539 QCAEVFPAPA 548


>ref|XP_002267721.2| PREDICTED: conserved oligomeric Golgi complex subunit 4-like [Vitis
            vinifera]
          Length = 1105

 Score =  115 bits (287), Expect = 5e-24
 Identities = 59/70 (84%), Positives = 60/70 (85%), Gaps = 3/70 (4%)
 Frame = -3

Query: 201  LLSNEYQEALQQKMMEPS---KLFLGGAGVQKTGTEIATALNNMDVSGEYVLKLRHEIVE 31
            LL NEYQEALQQKM EP+   KLFLGG GVQKTGTEIATALNNMDVS EYVLKLRHEI E
Sbjct: 833  LLGNEYQEALQQKMREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLRHEIEE 892

Query: 30   QCVEVFPAPA 1
            QC EVFP PA
Sbjct: 893  QCAEVFPTPA 902


>emb|CBI38713.3| unnamed protein product [Vitis vinifera]
          Length = 707

 Score =  115 bits (287), Expect = 5e-24
 Identities = 59/70 (84%), Positives = 60/70 (85%), Gaps = 3/70 (4%)
 Frame = -3

Query: 201 LLSNEYQEALQQKMMEPS---KLFLGGAGVQKTGTEIATALNNMDVSGEYVLKLRHEIVE 31
           LL NEYQEALQQKM EP+   KLFLGG GVQKTGTEIATALNNMDVS EYVLKLRHEI E
Sbjct: 435 LLGNEYQEALQQKMREPNLGAKLFLGGVGVQKTGTEIATALNNMDVSSEYVLKLRHEIEE 494

Query: 30  QCVEVFPAPA 1
           QC EVFP PA
Sbjct: 495 QCAEVFPTPA 504


>ref|XP_003626606.1| Conserved oligomeric Golgi complex subunit [Medicago truncatula]
           gi|87240849|gb|ABD32707.1| Conserved oligomeric Golgi
           complex component 4, related [Medicago truncatula]
           gi|355501621|gb|AES82824.1| Conserved oligomeric Golgi
           complex subunit [Medicago truncatula]
          Length = 747

 Score =  108 bits (271), Expect = 3e-22
 Identities = 55/70 (78%), Positives = 59/70 (84%), Gaps = 3/70 (4%)
 Frame = -3

Query: 201 LLSNEYQEALQQKMMEPS---KLFLGGAGVQKTGTEIATALNNMDVSGEYVLKLRHEIVE 31
           LLSNEY EALQQK+ EP+   KLF GG GVQKTGT+IA ALNNMDVS EYVLKL+HEI E
Sbjct: 475 LLSNEYHEALQQKIREPNLGAKLFFGGVGVQKTGTDIAAALNNMDVSSEYVLKLKHEIEE 534

Query: 30  QCVEVFPAPA 1
           QC EVFPAPA
Sbjct: 535 QCAEVFPAPA 544


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