BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00010510
         (369 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containi...   187   6e-46
ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containi...   177   1e-42
ref|XP_002299667.1| predicted protein [Populus trichocarpa] gi|2...   170   1e-40
ref|XP_002529286.1| pentatricopeptide repeat-containing protein,...   167   6e-40
ref|XP_002304067.1| predicted protein [Populus trichocarpa] gi|2...   165   4e-39

>ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic [Vitis vinifera]
           gi|298204537|emb|CBI23812.3| unnamed protein product
           [Vitis vinifera]
          Length = 659

 Score =  187 bits (476), Expect = 6e-46
 Identities = 93/118 (78%), Positives = 102/118 (86%)
 Frame = -2

Query: 356 EAKSIFNEMVTKDVKSDGYSDNIMISAYCQSGLLHEAKQLTRDFEARHEKYDLVMLNTVL 177
           EAKSIF EM  K VKSDGY  +IMISA+C+SGLL EAKQL RDFEA ++KYDLVMLNT+L
Sbjct: 364 EAKSIFEEMKKKQVKSDGYCYSIMISAFCRSGLLKEAKQLARDFEATYDKYDLVMLNTML 423

Query: 176 RAYCKVGEMESVM*MLRKMDELKISPDWNTFHILIKYFYKEKLYQLAYRTMVDMHSKG 3
            AYC+ GEMESVM M+RKMDEL ISPDWNTFHILIKYF KEKLY LAYRTM DMH+KG
Sbjct: 424 CAYCRAGEMESVMQMMRKMDELAISPDWNTFHILIKYFCKEKLYLLAYRTMEDMHNKG 481


>ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910,
           chloroplastic-like [Cucumis sativus]
          Length = 668

 Score =  177 bits (448), Expect = 1e-42
 Identities = 82/122 (67%), Positives = 104/122 (85%)
 Frame = -2

Query: 368 GHVNEAKSIFNEMVTKDVKSDGYSDNIMISAYCQSGLLHEAKQLTRDFEARHEKYDLVML 189
           G + EAK++F+EM  K+VK+DGY+ +IMISA+C+ GLL EAK L +DFEA +++YD+V+L
Sbjct: 362 GSIREAKTVFDEMKAKNVKTDGYAHSIMISAFCRGGLLEEAKLLAKDFEATYDRYDIVIL 421

Query: 188 NTVLRAYCKVGEMESVM*MLRKMDELKISPDWNTFHILIKYFYKEKLYQLAYRTMVDMHS 9
           NT+L AYC+ GEMESVM MLRKMD+L ISPD+NTFHILIKYF+KEKLY L YRT+ DMH 
Sbjct: 422 NTMLCAYCRAGEMESVMQMLRKMDDLAISPDYNTFHILIKYFFKEKLYLLCYRTLEDMHR 481

Query: 8   KG 3
           KG
Sbjct: 482 KG 483


>ref|XP_002299667.1| predicted protein [Populus trichocarpa] gi|222846925|gb|EEE84472.1|
           predicted protein [Populus trichocarpa]
          Length = 562

 Score =  170 bits (430), Expect = 1e-40
 Identities = 81/122 (66%), Positives = 101/122 (82%)
 Frame = -2

Query: 368 GHVNEAKSIFNEMVTKDVKSDGYSDNIMISAYCQSGLLHEAKQLTRDFEARHEKYDLVML 189
           G ++EA+S+FNEM  K VKS GYS +IMIS++C+ GL  EAK+L  +FEA+++KYD+V+L
Sbjct: 263 GLLDEARSVFNEMKEKRVKSGGYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVVIL 322

Query: 188 NTVLRAYCKVGEMESVM*MLRKMDELKISPDWNTFHILIKYFYKEKLYQLAYRTMVDMHS 9
           NT+L AYC+ GE ESVM  +RKMDEL ISPD+NTFHILIKYF KEKLY LAY+TM DMH 
Sbjct: 323 NTILCAYCRTGEKESVMRTMRKMDELAISPDYNTFHILIKYFCKEKLYMLAYQTMEDMHR 382

Query: 8   KG 3
           KG
Sbjct: 383 KG 384


>ref|XP_002529286.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223531275|gb|EEF33118.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 672

 Score =  167 bits (424), Expect = 6e-40
 Identities = 81/122 (66%), Positives = 102/122 (83%)
 Frame = -2

Query: 368 GHVNEAKSIFNEMVTKDVKSDGYSDNIMISAYCQSGLLHEAKQLTRDFEARHEKYDLVML 189
           G V+EA+S F+EM  K+VKSDGY+ +IMISAYC+  LL EAKQL ++FEA+++KYD+V+L
Sbjct: 371 GRVDEARSFFDEMKEKNVKSDGYAYSIMISAYCRGRLLEEAKQLAKEFEAKYDKYDVVIL 430

Query: 188 NTVLRAYCKVGEMESVM*MLRKMDELKISPDWNTFHILIKYFYKEKLYQLAYRTMVDMHS 9
           NT+L AYC+ G+MESVM  +RKMDEL ISP + TFHILIKYF K+KLY LAY+TM DMH 
Sbjct: 431 NTMLCAYCRAGDMESVMQTMRKMDELAISPSYCTFHILIKYFCKQKLYLLAYQTMEDMHR 490

Query: 8   KG 3
           KG
Sbjct: 491 KG 492


>ref|XP_002304067.1| predicted protein [Populus trichocarpa] gi|222841499|gb|EEE79046.1|
           predicted protein [Populus trichocarpa]
          Length = 378

 Score =  165 bits (417), Expect = 4e-39
 Identities = 78/122 (63%), Positives = 98/122 (80%)
 Frame = -2

Query: 368 GHVNEAKSIFNEMVTKDVKSDGYSDNIMISAYCQSGLLHEAKQLTRDFEARHEKYDLVML 189
           G ++EA+S+FNEM  K VK  GYS +IMIS++C+ GL  EAK+L  +FEA+++KYD+ + 
Sbjct: 145 GCIDEARSVFNEMKEKCVKPGGYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVAIS 204

Query: 188 NTVLRAYCKVGEMESVM*MLRKMDELKISPDWNTFHILIKYFYKEKLYQLAYRTMVDMHS 9
           N +L AYC+ GEMESVM  +RKMDEL ISPD+NTFHILIKYF KEKLY LAY+TM DMH 
Sbjct: 205 NAILCAYCRAGEMESVMRTMRKMDELAISPDYNTFHILIKYFCKEKLYMLAYQTMEDMHR 264

Query: 8   KG 3
           KG
Sbjct: 265 KG 266