BLASTX nr result
ID: Coptis25_contig00010509
seq
BLASTX 2.2.25 [Feb-01-2011] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= Coptis25_contig00010509 (374 letters) Database: ./nr 23,641,837 sequences; 8,123,359,852 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containi... 199 3e-49 ref|XP_002529286.1| pentatricopeptide repeat-containing protein,... 196 2e-48 ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containi... 195 4e-48 ref|XP_002299667.1| predicted protein [Populus trichocarpa] gi|2... 179 3e-43 ref|XP_003531588.1| PREDICTED: pentatricopeptide repeat-containi... 176 2e-42 >ref|XP_002270184.2| PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic [Vitis vinifera] gi|298204537|emb|CBI23812.3| unnamed protein product [Vitis vinifera] Length = 659 Score = 199 bits (505), Expect = 3e-49 Identities = 100/124 (80%), Positives = 109/124 (87%) Frame = +1 Query: 1 VYVRGGLFEKSRQLLLELETLGYARDEMPYCLLMDGLAKAGHVNEAKSIFNEMVTKDVKS 180 VYVRGGLFEKSR+LL ELE LGYA DEMPYCLLMDGLAK+ + EAKSIF EM K VKS Sbjct: 320 VYVRGGLFEKSRELLAELEDLGYAEDEMPYCLLMDGLAKSRRILEAKSIFEEMKKKQVKS 379 Query: 181 DGYSDSIMISAYCRSGLLHEAKQLARDFEARHERYDLVMLNTMLRAYCKAGEMESVMQML 360 DGY SIMISA+CRSGLL EAKQLARDFEA +++YDLVMLNTML AYC+AGEMESVMQM+ Sbjct: 380 DGYCYSIMISAFCRSGLLKEAKQLARDFEATYDKYDLVMLNTMLCAYCRAGEMESVMQMM 439 Query: 361 RKMD 372 RKMD Sbjct: 440 RKMD 443 >ref|XP_002529286.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] gi|223531275|gb|EEF33118.1| pentatricopeptide repeat-containing protein, putative [Ricinus communis] Length = 672 Score = 196 bits (498), Expect = 2e-48 Identities = 95/124 (76%), Positives = 113/124 (91%) Frame = +1 Query: 1 VYVRGGLFEKSRQLLLELETLGYARDEMPYCLLMDGLAKAGHVNEAKSIFNEMVTKDVKS 180 VYVRGGLFEKS+QLLLELETLGYA DEMPYCLLMDGL+KAG V+EA+S F+EM K+VKS Sbjct: 331 VYVRGGLFEKSQQLLLELETLGYAEDEMPYCLLMDGLSKAGRVDEARSFFDEMKEKNVKS 390 Query: 181 DGYSDSIMISAYCRSGLLHEAKQLARDFEARHERYDLVMLNTMLRAYCKAGEMESVMQML 360 DGY+ SIMISAYCR LL EAKQLA++FEA++++YD+V+LNTML AYC+AG+MESVMQ + Sbjct: 391 DGYAYSIMISAYCRGRLLEEAKQLAKEFEAKYDKYDVVILNTMLCAYCRAGDMESVMQTM 450 Query: 361 RKMD 372 RKMD Sbjct: 451 RKMD 454 >ref|XP_004141206.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like [Cucumis sativus] Length = 668 Score = 195 bits (495), Expect = 4e-48 Identities = 94/124 (75%), Positives = 111/124 (89%) Frame = +1 Query: 1 VYVRGGLFEKSRQLLLELETLGYARDEMPYCLLMDGLAKAGHVNEAKSIFNEMVTKDVKS 180 VYVRGGLFEKSR+LL ELE+LGY +EMPYCLLMDGLAKAG + EAK++F+EM K+VK+ Sbjct: 322 VYVRGGLFEKSRKLLSELESLGYGENEMPYCLLMDGLAKAGSIREAKTVFDEMKAKNVKT 381 Query: 181 DGYSDSIMISAYCRSGLLHEAKQLARDFEARHERYDLVMLNTMLRAYCKAGEMESVMQML 360 DGY+ SIMISA+CR GLL EAK LA+DFEA ++RYD+V+LNTML AYC+AGEMESVMQML Sbjct: 382 DGYAHSIMISAFCRGGLLEEAKLLAKDFEATYDRYDIVILNTMLCAYCRAGEMESVMQML 441 Query: 361 RKMD 372 RKMD Sbjct: 442 RKMD 445 >ref|XP_002299667.1| predicted protein [Populus trichocarpa] gi|222846925|gb|EEE84472.1| predicted protein [Populus trichocarpa] Length = 562 Score = 179 bits (453), Expect = 3e-43 Identities = 85/124 (68%), Positives = 108/124 (87%) Frame = +1 Query: 1 VYVRGGLFEKSRQLLLELETLGYARDEMPYCLLMDGLAKAGHVNEAKSIFNEMVTKDVKS 180 VYVRGGLFEKSR LL+EL+TLG+A++EMPYCLLMDGLAK G ++EA+S+FNEM K VKS Sbjct: 223 VYVRGGLFEKSRDLLVELDTLGFAKNEMPYCLLMDGLAKNGLLDEARSVFNEMKEKRVKS 282 Query: 181 DGYSDSIMISAYCRSGLLHEAKQLARDFEARHERYDLVMLNTMLRAYCKAGEMESVMQML 360 GYS SIMIS++CR GL EAK+LA +FEA++++YD+V+LNT+L AYC+ GE ESVM+ + Sbjct: 283 GGYSYSIMISSFCRGGLFEEAKELAEEFEAKYDKYDVVILNTILCAYCRTGEKESVMRTM 342 Query: 361 RKMD 372 RKMD Sbjct: 343 RKMD 346 >ref|XP_003531588.1| PREDICTED: pentatricopeptide repeat-containing protein At1g10910, chloroplastic-like [Glycine max] Length = 630 Score = 176 bits (445), Expect = 2e-42 Identities = 83/124 (66%), Positives = 104/124 (83%) Frame = +1 Query: 1 VYVRGGLFEKSRQLLLELETLGYARDEMPYCLLMDGLAKAGHVNEAKSIFNEMVTKDVKS 180 VYV+GGLFEKSR+LL EL++LGYA DEMPYC+ MDGLAKAG ++EAK IF+EM+ V+S Sbjct: 290 VYVKGGLFEKSRELLAELKSLGYAEDEMPYCIFMDGLAKAGQIHEAKLIFDEMMKNHVRS 349 Query: 181 DGYSDSIMISAYCRSGLLHEAKQLARDFEARHERYDLVMLNTMLRAYCKAGEMESVMQML 360 DGY+ SIMISA+CR+ L EAKQLA+DFE +YDLV+LN+ML A+C+ GEME VM+ L Sbjct: 350 DGYAHSIMISAFCRAKLFREAKQLAKDFETTSNKYDLVILNSMLCAFCRVGEMERVMETL 409 Query: 361 RKMD 372 +KMD Sbjct: 410 KKMD 413