BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009808
         (351 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AAB82639.1| putative non-LTR retroelement reverse transcripta...    59   5e-07
gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japo...    58   7e-07
gb|ABN08038.1| RNA-directed DNA polymerase (Reverse transcriptas...    56   1e-06
emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulga...    57   1e-06
gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptas...    57   1e-06

>gb|AAB82639.1| putative non-LTR retroelement reverse transcriptase [Arabidopsis
           thaliana]
          Length = 1374

 Score = 58.5 bits (140), Expect = 5e-07
 Identities = 38/102 (37%), Positives = 51/102 (50%), Gaps = 4/102 (3%)
 Frame = -3

Query: 295 CLNP*GKKKE*LNQFRPICKDNSLMKAISKIMQRRLNLIVPRIISKEQADFVPSRC---- 128
           CL P   K E +  FRPI   N + K I K+M  RL  I+P +IS+ QA FV  R     
Sbjct: 490 CLIPKILKAEKMTDFRPISLCNVIYKVIGKLMANRLKKILPSLISETQAAFVKGRLISDN 549

Query: 127 XXXXXXXXXXXSVNFKLRGMYVAIKLDVSQAYNTMSWEFIFK 2
                      S N K    ++AIK D+S+AY+ + W F+ K
Sbjct: 550 ILIAHELLHALSSNNKCSEEFIAIKTDISKAYDRVEWPFLEK 591


>gb|EEE51862.1| hypothetical protein OsJ_33393 [Oryza sativa Japonica Group]
          Length = 662

 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 35/93 (37%), Positives = 48/93 (51%), Gaps = 4/93 (4%)
 Frame = -3

Query: 274 KKE*LNQFRPICKDNSLMKAISKIMQRRLNLIVPRIISKEQADFVPSR--CXXXXXXXXX 101
           K E +   RPI   N L K +SK++  RL  I+P +IS  Q+ FVP R            
Sbjct: 191 KPENIKDLRPISLCNVLYKIVSKVLANRLKTILPEVISPTQSAFVPGRLISDNILVAYEM 250

Query: 100 XXSVNFKLRGM--YVAIKLDVSQAYNTMSWEFI 8
              +  K RG   Y AIKLD+S+AY+ + W F+
Sbjct: 251 THYMRSKKRGKMGYAAIKLDMSKAYDRVEWSFL 283


>gb|ABN08038.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 573

 Score = 56.2 bits (134), Expect(2) = 1e-06
 Identities = 35/99 (35%), Positives = 53/99 (53%), Gaps = 4/99 (4%)
 Frame = -3

Query: 292 LNP*GKKKE*LNQFRPICKDNSLMKAISKIMQRRLNLIVPRIISKEQADFVPSR--CXXX 119
           L P G   E +   RPI   N L K ISK++  RL  ++ + IS EQA FVPSR      
Sbjct: 51  LAPKGDNPEYMKDLRPISLCNVLYKIISKVLANRLRPLIDKWISTEQAAFVPSRSIMDNA 110

Query: 118 XXXXXXXXSVNFKLRGMY--VAIKLDVSQAYNTMSWEFI 8
                    +  K +G    +A+KLD+S+A++++SW ++
Sbjct: 111 ITAFEVLHCMKCKRKGKTGDIALKLDISKAFDSVSWSYL 149



 Score = 21.2 bits (43), Expect(2) = 1e-06
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -1

Query: 324 FPRGLNANFIALIPEG 277
           FP  LNA  I L P+G
Sbjct: 40  FPPELNATHIVLAPKG 55


>emb|CCA65995.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
          Length = 1389

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 31/88 (35%), Positives = 49/88 (55%), Gaps = 3/88 (3%)
 Frame = -3

Query: 259 NQFRPICKDNSLMKAISKIMQRRLNLIVPRIISKEQADFVPSRCXXXXXXXXXXXSVNFK 80
           N FRPI   +++ K ISKI+  RL + + +II   Q  F+P R              +FK
Sbjct: 518 NHFRPISLCSTIYKVISKIITNRLKITLGKIIHPLQGAFIPERLIQDNILIAHEVFHSFK 577

Query: 79  L---RGMYVAIKLDVSQAYNTMSWEFIF 5
               RG ++AIKLD+ +AY+ + W++I+
Sbjct: 578 NKTGRGGWIAIKLDMEKAYDRLEWKYIY 605


>gb|ABN09154.1| RNA-directed DNA polymerase (Reverse transcriptase) [Medicago
           truncatula]
          Length = 528

 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 32/89 (35%), Positives = 51/89 (57%), Gaps = 2/89 (2%)
 Frame = -3

Query: 262 LNQFRPICKDNSLMKAISKIMQRRLNLIVPRIISKEQADFVPSR--CXXXXXXXXXXXSV 89
           ++QFRPI   N   K ISKI+  RL  I+P I+S+EQ  F+  R               +
Sbjct: 189 MDQFRPIAMANFKFKIISKILADRLAQIMPNIVSQEQRGFIQGRNIKDCVCLASEAINML 248

Query: 88  NFKLRGMYVAIKLDVSQAYNTMSWEFIFK 2
           + K  G  +A K+D+S+A++T++W+F+ K
Sbjct: 249 DQKSFGGNLAFKVDISKAFDTLNWKFLLK 277