BLASTX nr result

ID: Coptis25_contig00009747 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009747
         (413 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002319481.1| predicted protein [Populus trichocarpa] gi|2...   108   4e-22
gb|ABK94876.1| unknown [Populus trichocarpa]                          108   4e-22
ref|XP_002277564.1| PREDICTED: NHL repeat-containing protein 2-l...   107   1e-21
emb|CAN61591.1| hypothetical protein VITISV_030553 [Vitis vinifera]   107   1e-21
ref|XP_002891968.1| hypothetical protein ARALYDRAFT_892829 [Arab...    98   6e-19

>ref|XP_002319481.1| predicted protein [Populus trichocarpa] gi|222857857|gb|EEE95404.1|
           predicted protein [Populus trichocarpa]
          Length = 1065

 Score =  108 bits (270), Expect = 4e-22
 Identities = 62/123 (50%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
 Frame = +3

Query: 69  KLSSPYYPQSFKQFRPTIFF--SLLQRRKQTQPQTPFSSRQNRNTI------ITCCLKLE 224
           KL SP    S  +F  ++FF  S  +  K          R+++N +      +  C+K+E
Sbjct: 9   KLLSPPSSLSSPRFAKSLFFFTSNPKGSKPISSLVQLFQRRSKNLVFNKKMEVKACVKVE 68

Query: 225 NSNAIETEEEKNTWGKVSAVLFDMDGVLCDSEESSRLAGVDVFAEMGVQVTTQDFIPFMG 404
             +  ETE   N WGKVSAVLFDMDGVLC+SEE SR+AGVDVFAEMGV+VT  DF+PFMG
Sbjct: 69  QKS--ETEVTGNEWGKVSAVLFDMDGVLCNSEEPSRMAGVDVFAEMGVEVTVDDFVPFMG 126

Query: 405 TGE 413
           TGE
Sbjct: 127 TGE 129


>gb|ABK94876.1| unknown [Populus trichocarpa]
          Length = 308

 Score =  108 bits (270), Expect = 4e-22
 Identities = 62/123 (50%), Positives = 78/123 (63%), Gaps = 8/123 (6%)
 Frame = +3

Query: 69  KLSSPYYPQSFKQFRPTIFF--SLLQRRKQTQPQTPFSSRQNRNTI------ITCCLKLE 224
           KL SP    S  +F  ++FF  S  +  K          R+++N +      +  C+K+E
Sbjct: 9   KLLSPPSSLSSPRFAKSLFFFTSNPKGSKPISSLVQLFQRRSKNLVFNKKMEVKACVKVE 68

Query: 225 NSNAIETEEEKNTWGKVSAVLFDMDGVLCDSEESSRLAGVDVFAEMGVQVTTQDFIPFMG 404
             +  ETE   N WGKVSAVLFDMDGVLC+SEE SR+AGVDVFAEMGV+VT  DF+PFMG
Sbjct: 69  QKS--ETEVTGNEWGKVSAVLFDMDGVLCNSEEPSRMAGVDVFAEMGVEVTVDDFVPFMG 126

Query: 405 TGE 413
           TGE
Sbjct: 127 TGE 129


>ref|XP_002277564.1| PREDICTED: NHL repeat-containing protein 2-like [Vitis vinifera]
          Length = 1078

 Score =  107 bits (267), Expect = 1e-21
 Identities = 55/80 (68%), Positives = 60/80 (75%)
 Frame = +3

Query: 174 SSRQNRNTIITCCLKLENSNAIETEEEKNTWGKVSAVLFDMDGVLCDSEESSRLAGVDVF 353
           S R  R      C+KLE  N  ET   K+ WGKVSAVLFDMDGVLC+SEE SR AGVDVF
Sbjct: 39  SLRHRRTAAPKACVKLEEKNVPETG--KSQWGKVSAVLFDMDGVLCNSEEPSRRAGVDVF 96

Query: 354 AEMGVQVTTQDFIPFMGTGE 413
            EMGVQVTT+DF+PFMGTGE
Sbjct: 97  HEMGVQVTTEDFVPFMGTGE 116


>emb|CAN61591.1| hypothetical protein VITISV_030553 [Vitis vinifera]
          Length = 659

 Score =  107 bits (267), Expect = 1e-21
 Identities = 55/80 (68%), Positives = 60/80 (75%)
 Frame = +3

Query: 174 SSRQNRNTIITCCLKLENSNAIETEEEKNTWGKVSAVLFDMDGVLCDSEESSRLAGVDVF 353
           S R  R      C+KLE  N  ET   K+ WGKVSAVLFDMDGVLC+SEE SR AGVDVF
Sbjct: 39  SLRHRRTAAPKACVKLEEKNVPETG--KSQWGKVSAVLFDMDGVLCNSEEPSRRAGVDVF 96

Query: 354 AEMGVQVTTQDFIPFMGTGE 413
            EMGVQVTT+DF+PFMGTGE
Sbjct: 97  HEMGVQVTTEDFVPFMGTGE 116


>ref|XP_002891968.1| hypothetical protein ARALYDRAFT_892829 [Arabidopsis lyrata subsp.
           lyrata] gi|297337810|gb|EFH68227.1| hypothetical protein
           ARALYDRAFT_892829 [Arabidopsis lyrata subsp. lyrata]
          Length = 1058

 Score = 98.2 bits (243), Expect = 6e-19
 Identities = 57/122 (46%), Positives = 72/122 (59%), Gaps = 7/122 (5%)
 Frame = +3

Query: 69  KLSSPYYPQSFKQFRPTIFFSLLQRRKQTQPQTPFSSRQNRNTIITCCLKLENSNAIETE 248
           KL+SP  P  F Q R     S+  R K T   + F+  +++  +      L +S+ +   
Sbjct: 4   KLTSP--PSIFSQSRRLSSSSIPIRSKSTSRPSSFTGFRSKTGVYLTKTALPSSSKLNVA 61

Query: 249 EEK-------NTWGKVSAVLFDMDGVLCDSEESSRLAGVDVFAEMGVQVTTQDFIPFMGT 407
            E          WGKVSAVLFDMDGVLC+SE+ SR A VDVFAEMGV+VT  DF+PFMGT
Sbjct: 62  AESPPATIATEDWGKVSAVLFDMDGVLCNSEDLSRRAAVDVFAEMGVEVTVDDFVPFMGT 121

Query: 408 GE 413
           GE
Sbjct: 122 GE 123


Top