BLASTX nr result

ID: Coptis25_contig00009736 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009736
         (216 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002312968.1| predicted protein [Populus trichocarpa] gi|2...    82   6e-14
ref|XP_002314389.1| predicted protein [Populus trichocarpa] gi|2...    75   5e-12
ref|XP_002333859.1| predicted protein [Populus trichocarpa] gi|2...    75   5e-12
emb|CAN70827.1| hypothetical protein VITISV_029099 [Vitis vinifera]    72   4e-11
emb|CAN77981.1| hypothetical protein VITISV_043416 [Vitis vinifera]    72   5e-11

>ref|XP_002312968.1| predicted protein [Populus trichocarpa] gi|222849376|gb|EEE86923.1|
           predicted protein [Populus trichocarpa]
          Length = 371

 Score = 81.6 bits (200), Expect = 6e-14
 Identities = 37/71 (52%), Positives = 52/71 (73%), Gaps = 1/71 (1%)
 Frame = +3

Query: 6   TTALVEDL-VGIVSDCGVCCFNISCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVKM 182
           T A+V D  V IV D G  C N++CQDT WV D+ ASYHVTP   F+T+Y+ G++G+V+M
Sbjct: 273 TAAVVSDGDVAIVCDDG--CVNLACQDTTWVADSAASYHVTPRHDFYTSYTAGDFGQVRM 330

Query: 183 GNSGVSKIIGI 215
           GN G++ ++GI
Sbjct: 331 GNQGMASVVGI 341


>ref|XP_002314389.1| predicted protein [Populus trichocarpa] gi|222863429|gb|EEF00560.1|
           predicted protein [Populus trichocarpa]
          Length = 341

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 28/56 (50%), Positives = 42/56 (75%)
 Frame = +3

Query: 48  CGVCCFNISCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVKMGNSGVSKIIGI 215
           C   C N++CQDT WV D+ ASYHVTP R F+T+Y+  ++G+V+MGN  ++ ++GI
Sbjct: 286 CDDSCVNLACQDTTWVADSAASYHVTPRRDFYTSYTACDFGQVRMGNQSMANVVGI 341


>ref|XP_002333859.1| predicted protein [Populus trichocarpa] gi|222838791|gb|EEE77142.1|
           predicted protein [Populus trichocarpa]
          Length = 207

 Score = 75.1 bits (183), Expect = 5e-12
 Identities = 37/68 (54%), Positives = 48/68 (70%), Gaps = 1/68 (1%)
 Frame = +3

Query: 6   TTALVEDL-VGIVSDCGVCCFNISCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVKM 182
           T A+V D  V IV D G  C N++CQDT WV D+ ASYHVTP R F+T+Y+ G++G+V+M
Sbjct: 140 TAAVVFDGDVAIVCDDG--CVNLACQDTTWVADSAASYHVTPRRDFYTSYTAGDFGQVRM 197

Query: 183 GNSGVSKI 206
           GN  V  I
Sbjct: 198 GNCNVLNI 205


>emb|CAN70827.1| hypothetical protein VITISV_029099 [Vitis vinifera]
          Length = 649

 Score = 72.4 bits (176), Expect = 4e-11
 Identities = 29/50 (58%), Positives = 39/50 (78%)
 Frame = +3

Query: 66  NISCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVKMGNSGVSKIIGI 215
           N SCQ+T WVID+GAS H TP + FFT+Y+ G++G V+MGN G +K IG+
Sbjct: 239 NFSCQETSWVIDSGASIHATPRKDFFTSYTSGDFGSVRMGNDGSAKAIGM 288


>emb|CAN77981.1| hypothetical protein VITISV_043416 [Vitis vinifera]
          Length = 776

 Score = 72.0 bits (175), Expect = 5e-11
 Identities = 29/71 (40%), Positives = 47/71 (66%), Gaps = 6/71 (8%)
 Frame = +3

Query: 21  EDLVGIVSD------CGVCCFNISCQDTEWVIDTGASYHVTPHRGFFTTYSCGEYGEVKM 182
           +D+V + SD      C   C N++CQD+ WV+DT  S+H+T H+ FF++Y+ G +G V+M
Sbjct: 345 KDIVVVASDGDTTIVCDDACVNLACQDSTWVVDTAMSFHITTHKDFFSSYTSGSFGWVRM 404

Query: 183 GNSGVSKIIGI 215
           GN    +I+G+
Sbjct: 405 GNEAKCEIVGM 415


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