BLASTX nr result

ID: Coptis25_contig00009734 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009734
         (264 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AFK44959.1| unknown [Lotus japonicus]                               83   2e-14
gb|ACU23298.1| unknown [Glycine max]                                   83   2e-14
ref|XP_004162895.1| PREDICTED: uncharacterized LOC101222348 isof...    80   1e-13
ref|XP_004148806.1| PREDICTED: uncharacterized protein LOC101222...    80   1e-13
ref|XP_003592143.1| RNA-binding protein with multiple splicing [...    75   4e-12

>gb|AFK44959.1| unknown [Lotus japonicus]
          Length = 239

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 39/63 (61%), Positives = 47/63 (74%)
 Frame = +3

Query: 75  MGAPRSVGSDMLPNGRGVVGFNGQLPADAIGRPGHEGLPLPPDATNTLYIEGLPPDSTKR 254
           MG     G D+ PNGRG   + GQ P D++ RPGHE +PLPPDA++TLY+EGLP DSTKR
Sbjct: 96  MGRHGGGGPDIAPNGRGF-NYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLPSDSTKR 154

Query: 255 EVA 263
           EVA
Sbjct: 155 EVA 157


>gb|ACU23298.1| unknown [Glycine max]
          Length = 242

 Score = 83.2 bits (204), Expect = 2e-14
 Identities = 40/65 (61%), Positives = 49/65 (75%)
 Frame = +3

Query: 69  SLMGAPRSVGSDMLPNGRGVVGFNGQLPADAIGRPGHEGLPLPPDATNTLYIEGLPPDST 248
           S+MG     G D+ PNGRGV  + GQLP DA+ RPG E + LPPDA++TLY+EGLP DST
Sbjct: 97  SVMGRHGGGGPDLAPNGRGV-NYGGQLPVDAVSRPGPETVSLPPDASSTLYVEGLPSDST 155

Query: 249 KREVA 263
           +REVA
Sbjct: 156 RREVA 160


>ref|XP_004162895.1| PREDICTED: uncharacterized LOC101222348 isoform 1 [Cucumis sativus]
           gi|449506964|ref|XP_004162896.1| PREDICTED:
           uncharacterized LOC101222348 isoform 2 [Cucumis sativus]
          Length = 257

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 36/64 (56%), Positives = 48/64 (75%)
 Frame = +3

Query: 72  LMGAPRSVGSDMLPNGRGVVGFNGQLPADAIGRPGHEGLPLPPDATNTLYIEGLPPDSTK 251
           +M  P +V  D+ PNGR +  +   LP D++ RPG E +PLPPDA+NTLY+EGLPPDS++
Sbjct: 113 VMSRPPAVSPDLAPNGRNLE-YGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSR 171

Query: 252 REVA 263
           REVA
Sbjct: 172 REVA 175


>ref|XP_004148806.1| PREDICTED: uncharacterized protein LOC101222348 isoform 1 [Cucumis
           sativus] gi|449462156|ref|XP_004148807.1| PREDICTED:
           uncharacterized protein LOC101222348 isoform 2 [Cucumis
           sativus]
          Length = 257

 Score = 80.5 bits (197), Expect = 1e-13
 Identities = 36/64 (56%), Positives = 48/64 (75%)
 Frame = +3

Query: 72  LMGAPRSVGSDMLPNGRGVVGFNGQLPADAIGRPGHEGLPLPPDATNTLYIEGLPPDSTK 251
           +M  P +V  D+ PNGR +  +   LP D++ RPG E +PLPPDA+NTLY+EGLPPDS++
Sbjct: 113 VMSRPPAVSPDLAPNGRNLE-YGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPDSSR 171

Query: 252 REVA 263
           REVA
Sbjct: 172 REVA 175


>ref|XP_003592143.1| RNA-binding protein with multiple splicing [Medicago truncatula]
           gi|355481191|gb|AES62394.1| RNA-binding protein with
           multiple splicing [Medicago truncatula]
           gi|388515921|gb|AFK46022.1| unknown [Medicago
           truncatula]
          Length = 147

 Score = 75.5 bits (184), Expect = 4e-12
 Identities = 37/56 (66%), Positives = 43/56 (76%)
 Frame = +3

Query: 96  GSDMLPNGRGVVGFNGQLPADAIGRPGHEGLPLPPDATNTLYIEGLPPDSTKREVA 263
           G D+  NGR V  F GQLP DA+ RPG E +PLP DA++TLY+EGLP DSTKREVA
Sbjct: 10  GPDLSRNGRDV-NFGGQLPIDAVSRPGPETIPLPRDASSTLYVEGLPSDSTKREVA 64


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