BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009714
         (1522 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002284465.1| PREDICTED: general transcription factor IIH ...   360   5e-97
ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|2...   347   4e-93
ref|XP_004152842.1| PREDICTED: general transcription factor IIH ...   328   2e-87
ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arab...   327   7e-87
ref|NP_564050.1| transcription initiation factor TFIIH subunit H...   326   1e-86

>ref|XP_002284465.1| PREDICTED: general transcription factor IIH subunit 3 [Vitis
            vinifera] gi|302141830|emb|CBI19033.3| unnamed protein
            product [Vitis vinifera]
          Length = 297

 Score =  360 bits (924), Expect = 5e-97
 Identities = 188/275 (68%), Positives = 202/275 (73%), Gaps = 4/275 (1%)
 Frame = -2

Query: 1332 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXVIASGVNSCNFIYDXXXXXSQ 1153
            TNPFFW      L FS FLSHVLAF              VIA+G NSCNFI+D     + 
Sbjct: 22   TNPFFWS--TASLPFSKFLSHVLAFLNSILLINQLNQVVVIATGCNSCNFIFDSSSVPAN 79

Query: 1152 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGD----NXXXXXXXXXXXXXLCYIQRVFR 985
            P  +E    PAL S LL  LEEF+T D++L+ +                  LCYIQRVFR
Sbjct: 80   PN-LENGRMPALCSNLLQKLEEFVTGDEKLSKEVLAAGIGSSLLSGSLSMALCYIQRVFR 138

Query: 984  SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 805
            +G LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSCVIG QHSAFLQQASYIT
Sbjct: 139  TGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCVIGAQHSAFLQQASYIT 198

Query: 804  GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 625
            GGVYLKPQ LDGLFQYLSTVFATDL SR  L+LPKPAGVDFRASCFCHK TIDMGYICSV
Sbjct: 199  GGVYLKPQQLDGLFQYLSTVFATDLHSRRFLQLPKPAGVDFRASCFCHKNTIDMGYICSV 258

Query: 624  CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 520
            CLSIFCKHHKKCSTCGSVFG+A  +  S  DRKRK
Sbjct: 259  CLSIFCKHHKKCSTCGSVFGQAQSDGNSATDRKRK 293


>ref|XP_002307429.1| predicted protein [Populus trichocarpa] gi|222856878|gb|EEE94425.1|
            predicted protein [Populus trichocarpa]
          Length = 289

 Score =  347 bits (891), Expect = 4e-93
 Identities = 181/275 (65%), Positives = 204/275 (74%), Gaps = 4/275 (1%)
 Frame = -2

Query: 1332 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXVIASGVNSCNFIYDXXXXXSQ 1153
            TNPFFW  P++ LSFS FLSHVLAF              VIASG N+C++IYD     SQ
Sbjct: 13   TNPFFWTPPSS-LSFSQFLSHVLAFVNSILLLNQLNQVVVIASGYNTCDYIYDSSSDASQ 71

Query: 1152 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXXXXXXL----CYIQRVFR 985
             +  E    P+L S LL  LEEF+  D++L  +              L    CYIQRVFR
Sbjct: 72   -LGSEDGRMPSLYSNLLQKLEEFMIKDEKLGKEQSQRAIKSSLLSGSLSMALCYIQRVFR 130

Query: 984  SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 805
            SG LHPQPRILCLQGSPDG EQYVAVMN+IFSAQRSMVPIDSC +G  +SAFLQQASYIT
Sbjct: 131  SGPLHPQPRILCLQGSPDGPEQYVAVMNAIFSAQRSMVPIDSCYVGAHNSAFLQQASYIT 190

Query: 804  GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 625
            GGVY+KPQHLDGLFQYL+TVFATDL SR+ ++LP+PAGVDFRASCFCHK TIDMGYICSV
Sbjct: 191  GGVYVKPQHLDGLFQYLTTVFATDLHSRSFIQLPRPAGVDFRASCFCHKTTIDMGYICSV 250

Query: 624  CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 520
            CLSIFC HHKKCSTCGSVFG+A  + +ST D KRK
Sbjct: 251  CLSIFCNHHKKCSTCGSVFGQAQSDTSSTSDLKRK 285


>ref|XP_004152842.1| PREDICTED: general transcription factor IIH subunit 3-like [Cucumis
            sativus]
          Length = 295

 Score =  328 bits (841), Expect = 2e-87
 Identities = 172/275 (62%), Positives = 193/275 (70%), Gaps = 4/275 (1%)
 Frame = -2

Query: 1332 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXVIASGVNSCNFIYDXXXXXSQ 1153
            TNPFFW    + L FS FLSHVLAF              VI +G  SC ++Y+     + 
Sbjct: 22   TNPFFWS--TSALPFSKFLSHVLAFLNSILVLNQLNEVVVIGTGYASCKYLYNSSSYSNH 79

Query: 1152 PVVIETRTTPALSSKLLLNLEEFLTTDQRLTGDNXXXXXXXXXXXXXL----CYIQRVFR 985
               +E    PAL ++LL NLEEF+  D++   ++             L    CYIQ+VFR
Sbjct: 80   G--LEDGRMPALCTRLLKNLEEFVIGDEQSIKEDPKGGTMSSLLSGSLSMALCYIQKVFR 137

Query: 984  SGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASYIT 805
            SGSLHPQPRILCLQGSPDG EQYVA+MN+IFSAQRSMVPIDSC IG  +SAFLQQASYIT
Sbjct: 138  SGSLHPQPRILCLQGSPDGPEQYVAIMNAIFSAQRSMVPIDSCYIGSHNSAFLQQASYIT 197

Query: 804  GGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYICSV 625
            GGVYLKPQ +DGLFQYLSTVF TDL SR  L+LPK  GVDFRASCFCHKKTIDMGY+CSV
Sbjct: 198  GGVYLKPQQMDGLFQYLSTVFGTDLHSRTFLQLPKSVGVDFRASCFCHKKTIDMGYVCSV 257

Query: 624  CLSIFCKHHKKCSTCGSVFGEAHPEATSTPDRKRK 520
            CLSIFCKHHKKCSTCGSVFGE   E  S    KRK
Sbjct: 258  CLSIFCKHHKKCSTCGSVFGETPVELDSVSKLKRK 292


>ref|XP_002892997.1| hypothetical protein ARALYDRAFT_472054 [Arabidopsis lyrata subsp.
            lyrata] gi|297338839|gb|EFH69256.1| hypothetical protein
            ARALYDRAFT_472054 [Arabidopsis lyrata subsp. lyrata]
          Length = 301

 Score =  327 bits (837), Expect = 7e-87
 Identities = 173/278 (62%), Positives = 199/278 (71%), Gaps = 7/278 (2%)
 Frame = -2

Query: 1332 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXVIASGVNSCNFIYDXXXXXSQ 1153
            TNP FW    T ++FS FLSHVLAF              VIA+G +SC++IYD     + 
Sbjct: 22   TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79

Query: 1152 PVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXXXXXXXXXXXXLCYIQRV 991
              +    T  PAL   LL  LE+F+T D+ L+      D              LCYIQRV
Sbjct: 80   GNLESNGTGMPALFGSLLKKLEDFVTKDEELSREEVSEDRIPSCLLSGSLSMALCYIQRV 139

Query: 990  FRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASY 811
            FRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQASY
Sbjct: 140  FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASY 199

Query: 810  ITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYIC 631
            ITGGV+  P+ LDGLFQYL+T+FATDL SR+ ++LPKP GVDFRASCFCHKKTIDMGYIC
Sbjct: 200  ITGGVHHTPKQLDGLFQYLTTIFATDLHSRSFVQLPKPIGVDFRASCFCHKKTIDMGYIC 259

Query: 630  SVCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 520
            SVCLSIFC+HHKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 260  SVCLSIFCEHHKKCSTCGSVFGQSKLDDASSVSDKKRK 297


>ref|NP_564050.1| transcription initiation factor TFIIH subunit H3 [Arabidopsis
            thaliana] gi|21537277|gb|AAM61618.1| unknown [Arabidopsis
            thaliana] gi|92856638|gb|ABE77412.1| At1g18340
            [Arabidopsis thaliana] gi|332191584|gb|AEE29705.1|
            transcription initiation factor TFIIH subunit H3
            [Arabidopsis thaliana]
          Length = 301

 Score =  326 bits (835), Expect = 1e-86
 Identities = 173/278 (62%), Positives = 197/278 (70%), Gaps = 7/278 (2%)
 Frame = -2

Query: 1332 TNPFFWGGPNTCLSFSTFLSHVLAFXXXXXXXXXXXXXXVIASGVNSCNFIYDXXXXXSQ 1153
            TNP FW    T ++FS FLSHVLAF              VIA+G +SC++IYD     + 
Sbjct: 22   TNPLFWS--TTSITFSQFLSHVLAFLNAVLGLNQLNQVVVIATGYSSCDYIYDSSLTSNH 79

Query: 1152 PVVIETRT-TPALSSKLLLNLEEFLTTDQRLTG-----DNXXXXXXXXXXXXXLCYIQRV 991
                   T  PA+   LL  LEEF+T D+ L+      D              LCYIQRV
Sbjct: 80   GNFESNGTGMPAIFGSLLKKLEEFVTKDEELSKEEVSEDRIPSCLLSGSLSMALCYIQRV 139

Query: 990  FRSGSLHPQPRILCLQGSPDGSEQYVAVMNSIFSAQRSMVPIDSCVIGPQHSAFLQQASY 811
            FRSG LHPQPRILCLQGSPDG EQYVAVMNSIFSAQR MVPIDSC IG Q+SAFLQQASY
Sbjct: 140  FRSGHLHPQPRILCLQGSPDGPEQYVAVMNSIFSAQRLMVPIDSCYIGVQNSAFLQQASY 199

Query: 810  ITGGVYLKPQHLDGLFQYLSTVFATDLQSRNILELPKPAGVDFRASCFCHKKTIDMGYIC 631
            ITGGV+  P+ LDGLFQYL+T+FATDL SR  ++LPKP GVDFRASCFCHKKTIDMGYIC
Sbjct: 200  ITGGVHHTPKQLDGLFQYLTTIFATDLHSRGFVQLPKPIGVDFRASCFCHKKTIDMGYIC 259

Query: 630  SVCLSIFCKHHKKCSTCGSVFGEAH-PEATSTPDRKRK 520
            SVCLSIFC+HHKKCSTCGSVFG++   +A+S  D+KRK
Sbjct: 260  SVCLSIFCEHHKKCSTCGSVFGQSKLDDASSASDKKRK 297