BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009703
         (266 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containi...   106   2e-21
emb|CBI26127.3| unnamed protein product [Vitis vinifera]              106   2e-21
ref|XP_002516850.1| pentatricopeptide repeat-containing protein,...   103   2e-20
ref|XP_002879637.1| pentatricopeptide repeat-containing protein ...   102   4e-20
ref|NP_181235.1| pentatricopeptide repeat-containing protein [Ar...    99   3e-19

>ref|XP_002276935.1| PREDICTED: pentatricopeptide repeat-containing protein At2g36980,
           mitochondrial-like [Vitis vinifera]
          Length = 623

 Score =  106 bits (264), Expect = 2e-21
 Identities = 54/88 (61%), Positives = 66/88 (75%)
 Frame = -3

Query: 264 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGLSQQGMELFTDMRI 85
           L+  TSKI ALA+ G+IT+AR+LFDEM  +D V WNAML+SYS+LGL QQ + LF  MRI
Sbjct: 5   LFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRI 64

Query: 84  SGLRPDHFSFTASLSASADAGELHFGRK 1
           +  RPD F+FTA+LSA A  GEL  G K
Sbjct: 65  ANSRPDRFTFTATLSACAGLGELRRGMK 92


>emb|CBI26127.3| unnamed protein product [Vitis vinifera]
          Length = 603

 Score =  106 bits (264), Expect = 2e-21
 Identities = 54/88 (61%), Positives = 66/88 (75%)
 Frame = -3

Query: 264 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGLSQQGMELFTDMRI 85
           L+  TSKI ALA+ G+IT+AR+LFDEM  +D V WNAML+SYS+LGL QQ + LF  MRI
Sbjct: 5   LFQTTSKIVALAKLGRITSARRLFDEMPHKDTVAWNAMLASYSQLGLHQQALCLFHHMRI 64

Query: 84  SGLRPDHFSFTASLSASADAGELHFGRK 1
           +  RPD F+FTA+LSA A  GEL  G K
Sbjct: 65  ANSRPDRFTFTATLSACAGLGELRRGMK 92


>ref|XP_002516850.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223543938|gb|EEF45464.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 623

 Score =  103 bits (256), Expect = 2e-20
 Identities = 49/88 (55%), Positives = 63/88 (71%)
 Frame = -3

Query: 264 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGLSQQGMELFTDMRI 85
           L+ +TSKI+AL  SG I  ARKLFDEM  RD V WN+M++SYS+LG  Q+ + +F  MR 
Sbjct: 5   LFRITSKISALGSSGYIVHARKLFDEMPNRDTVAWNSMITSYSQLGFHQEALSIFYQMRN 64

Query: 84  SGLRPDHFSFTASLSASADAGELHFGRK 1
           +  +PDHF+FTA+LSA A AG   FG K
Sbjct: 65  TNTKPDHFTFTATLSACAGAGSFPFGTK 92


>ref|XP_002879637.1| pentatricopeptide repeat-containing protein [Arabidopsis lyrata
           subsp. lyrata] gi|297325476|gb|EFH55896.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           lyrata subsp. lyrata]
          Length = 624

 Score =  102 bits (253), Expect = 4e-20
 Identities = 49/88 (55%), Positives = 63/88 (71%)
 Frame = -3

Query: 264 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGLSQQGMELFTDMRI 85
           L  LTSKI +LA+SG+IT+AR++FDEM+ RD V WN ML+SYS LGL Q+ + LFT +R 
Sbjct: 4   LVRLTSKIASLAKSGRITSARQMFDEMTDRDTVAWNTMLTSYSHLGLHQEAIALFTQLRF 63

Query: 84  SGLRPDHFSFTASLSASADAGELHFGRK 1
           S  +PD +SFTA LS     G +  GRK
Sbjct: 64  SDSKPDDYSFTAILSTCGSLGNVRLGRK 91



 Score = 57.4 bits (137), Expect = 1e-06
 Identities = 24/79 (30%), Positives = 48/79 (60%)
 Frame = -3

Query: 243 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGLSQQGMELFTDMRISGLRPDH 64
           +   A+ G I  + + F +++ +D+V+WN ML ++   GL+ Q +EL+ +M  SG++PD+
Sbjct: 378 VNLYAKCGDIKESNRAFGDIANKDLVSWNTMLFAFGVHGLADQALELYDNMIASGIKPDN 437

Query: 63  FSFTASLSASADAGELHFG 7
            +F   L+  + +G +  G
Sbjct: 438 VTFIGLLTTCSHSGLVEKG 456


>ref|NP_181235.1| pentatricopeptide repeat-containing protein [Arabidopsis thaliana]
           gi|75206293|sp|Q9SJK9.1|PP189_ARATH RecName:
           Full=Pentatricopeptide repeat-containing protein
           At2g36980, mitochondrial; Flags: Precursor
           gi|4883614|gb|AAD31583.1| hypothetical protein
           [Arabidopsis thaliana] gi|330254236|gb|AEC09330.1|
           pentatricopeptide repeat-containing protein [Arabidopsis
           thaliana]
          Length = 625

 Score = 99.4 bits (246), Expect = 3e-19
 Identities = 48/88 (54%), Positives = 63/88 (71%)
 Frame = -3

Query: 264 LYHLTSKITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGLSQQGMELFTDMRI 85
           L  LTSKI +LA+SG+I +AR++FD M + D V WN ML+SYS+LGL Q+ + LFT +R 
Sbjct: 4   LVRLTSKIASLAKSGRIASARQVFDGMPELDTVAWNTMLTSYSRLGLHQEAIALFTQLRF 63

Query: 84  SGLRPDHFSFTASLSASADAGELHFGRK 1
           S  +PD +SFTA LS  A  G + FGRK
Sbjct: 64  SDAKPDDYSFTAILSTCASLGNVKFGRK 91



 Score = 56.2 bits (134), Expect = 3e-06
 Identities = 24/79 (30%), Positives = 48/79 (60%)
 Frame = -3

Query: 243 ITALARSGQITTARKLFDEMSQRDIVTWNAMLSSYSKLGLSQQGMELFTDMRISGLRPDH 64
           +   A+ G I  A + F +++ +D+V+WN ML ++   GL+ Q ++L+ +M  SG++PD+
Sbjct: 379 VNLYAKCGDIKEADRAFGDIANKDLVSWNTMLFAFGVHGLADQALKLYDNMIASGIKPDN 438

Query: 63  FSFTASLSASADAGELHFG 7
            +F   L+  + +G +  G
Sbjct: 439 VTFIGLLTTCSHSGLVEEG 457