BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009702
         (234 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containi...   103   1e-20
emb|CBI19956.3| unnamed protein product [Vitis vinifera]              102   4e-20
ref|XP_003602124.1| Pentatricopeptide repeat-containing protein ...    95   7e-18
ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|2...    93   3e-17

>ref|XP_002278486.2| PREDICTED: pentatricopeptide repeat-containing protein At3g21470
           [Vitis vinifera]
          Length = 575

 Score =  103 bits (258), Expect = 1e-20
 Identities = 50/76 (65%), Positives = 59/76 (77%)
 Frame = -2

Query: 230 NVMIGTSLVSFYSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMK 51
           +VMIGTSLV  Y+KC  + DSRK+FD MPE N VTWNAMI GYL NGD  +A +LF KM 
Sbjct: 128 DVMIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMS 187

Query: 50  MRSSVTWSEMIDGLAR 3
           +R++VTW EMIDG AR
Sbjct: 188 IRTAVTWIEMIDGFAR 203



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/76 (32%), Positives = 48/76 (63%)
 Frame = -2

Query: 230 NVMIGTSLVSFYSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMK 51
           NV+  T +V  Y++ + +  +R++F+ MP+ N   W++MI GY K G++  A  +F ++ 
Sbjct: 223 NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIP 282

Query: 50  MRSSVTWSEMIDGLAR 3
           +R+ V W+ +I G A+
Sbjct: 283 VRNLVNWNSLISGYAQ 298


>ref|XP_003527965.1| PREDICTED: pentatricopeptide repeat-containing protein
           At3g21470-like [Glycine max]
          Length = 535

 Score =  103 bits (258), Expect = 1e-20
 Identities = 47/77 (61%), Positives = 63/77 (81%)
 Frame = -2

Query: 233 SNVMIGTSLVSFYSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKM 54
           S+V+IGT+L++ YSKC V+ D+R LFD MPE NVVTWNAMI GYL+NGD  +A+++F KM
Sbjct: 79  SDVIIGTALLTTYSKCGVVRDARNLFDTMPERNVVTWNAMISGYLRNGDTESAYLVFEKM 138

Query: 53  KMRSSVTWSEMIDGLAR 3
           + ++ VTWS+MI G AR
Sbjct: 139 QGKTQVTWSQMIGGFAR 155


>emb|CBI19956.3| unnamed protein product [Vitis vinifera]
          Length = 446

 Score =  102 bits (253), Expect = 4e-20
 Identities = 49/74 (66%), Positives = 57/74 (77%)
 Frame = -2

Query: 224 MIGTSLVSFYSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMR 45
           MIGTSLV  Y+KC  + DSRK+FD MPE N VTWNAMI GYL NGD  +A +LF KM +R
Sbjct: 1   MIGTSLVCMYAKCGNVVDSRKVFDYMPERNAVTWNAMICGYLGNGDSKSAVLLFEKMSIR 60

Query: 44  SSVTWSEMIDGLAR 3
           ++VTW EMIDG AR
Sbjct: 61  TAVTWIEMIDGFAR 74



 Score = 57.0 bits (136), Expect = 2e-06
 Identities = 25/76 (32%), Positives = 48/76 (63%)
 Frame = -2

Query: 230 NVMIGTSLVSFYSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMK 51
           NV+  T +V  Y++ + +  +R++F+ MP+ N   W++MI GY K G++  A  +F ++ 
Sbjct: 94  NVVTWTVMVDGYARNAEMEAAREVFEGMPQRNFFAWSSMISGYCKKGNVKEARSIFDRIP 153

Query: 50  MRSSVTWSEMIDGLAR 3
           +R+ V W+ +I G A+
Sbjct: 154 VRNLVNWNSLISGYAQ 169


>ref|XP_003602124.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
           gi|355491172|gb|AES72375.1| Pentatricopeptide
           repeat-containing protein [Medicago truncatula]
          Length = 616

 Score = 94.7 bits (234), Expect = 7e-18
 Identities = 43/76 (56%), Positives = 59/76 (77%)
 Frame = -2

Query: 230 NVMIGTSLVSFYSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMK 51
           +V IGT++V+ Y+KC V+ D+RK+FD MPE NVVTWNAMI GYL+NGD  +A + F +M 
Sbjct: 85  DVFIGTAIVAAYAKCGVVCDARKVFDLMPERNVVTWNAMIGGYLRNGDAKSALLAFEEMP 144

Query: 50  MRSSVTWSEMIDGLAR 3
            ++ V+WS+MI G AR
Sbjct: 145 GKTRVSWSQMIGGFAR 160



 Score = 58.2 bits (139), Expect = 7e-07
 Identities = 27/73 (36%), Positives = 46/73 (63%)
 Frame = -2

Query: 230 NVMIGTSLVSFYSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMK 51
           +V+I T +V  Y+K   + D+R++F+ MPE N   W++M+ GY K GD+  A  +F ++ 
Sbjct: 180 DVVIWTVMVDGYAKKGEMEDAREVFELMPERNYFVWSSMVCGYCKKGDVMEAEAIFRRIP 239

Query: 50  MRSSVTWSEMIDG 12
           +R+   W+ MI G
Sbjct: 240 VRNLEIWNSMIAG 252


>ref|XP_002302197.1| predicted protein [Populus trichocarpa] gi|222843923|gb|EEE81470.1|
           predicted protein [Populus trichocarpa]
          Length = 440

 Score = 92.8 bits (229), Expect = 3e-17
 Identities = 45/65 (69%), Positives = 51/65 (78%)
 Frame = -2

Query: 197 YSKCSVIFDSRKLFDEMPETNVVTWNAMIDGYLKNGDMGTAWVLFGKMKMRSSVTWSEMI 18
           Y+KC  I DSRKLF+ MPE NVVTWNAMI GY KNGDM +A VLF KM  R++V+W EMI
Sbjct: 2   YAKCGDIPDSRKLFEYMPERNVVTWNAMISGYGKNGDMKSASVLFDKMSTRNAVSWIEMI 61

Query: 17  DGLAR 3
           DG AR
Sbjct: 62  DGFAR 66