BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009627
         (631 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002278820.1| PREDICTED: 50S ribosomal protein L5, chlorop...   270   1e-70
ref|NP_192040.1| 50S ribosomal protein L5 [Arabidopsis thaliana]...   243   3e-62
ref|XP_002511913.1| 50S ribosomal protein L5, putative [Ricinus ...   242   5e-62
ref|XP_002872896.1| ribosomal protein L5 family protein [Arabido...   240   2e-61
gb|ABK96601.1| unknown [Populus trichocarpa x Populus deltoides]      235   4e-60

>ref|XP_002278820.1| PREDICTED: 50S ribosomal protein L5, chloroplastic [Vitis vinifera]
           gi|297745362|emb|CBI40442.3| unnamed protein product
           [Vitis vinifera]
          Length = 265

 Score =  270 bits (691), Expect = 1e-70
 Identities = 136/177 (76%), Positives = 154/177 (87%), Gaps = 1/177 (0%)
 Frame = +3

Query: 66  MASSATLHSCFSSFHGQSPILSSPISTRFPTPSSRNQCGFSVKA-SNVVLVEKSEAEKVQ 242
           MAS A L S  SSFHGQ P+ SSP S R P  + RN CGFSVKA S +VLVEKSEA K  
Sbjct: 1   MASPALLQSNASSFHGQFPLASSPFSVRLPYGNPRNGCGFSVKALSEIVLVEKSEAVKTN 60

Query: 243 RLKTTYLEKIVPLLKEEFAYTNMHQVPKVEKIVVNCGIGEAAQNSKGLDAAMKDLSIICG 422
           RLKTTYLEKIVPLLKEEF+Y NMH+VPK+EKIV+NCGIG+A+QN+KGL+AAM +L++I G
Sbjct: 61  RLKTTYLEKIVPLLKEEFSYQNMHEVPKIEKIVLNCGIGDASQNAKGLEAAMNELALIAG 120

Query: 423 QRPVKTRARVSIATFKLREGQPIGLAVTLRGNIMYSFLDRLINLGLPRTRDFQGVSP 593
           QRPVKTRAR SIATFKLREGQP+G+AVTLRGN+MYSFLDRLINLGLPRTRDFQGV+P
Sbjct: 121 QRPVKTRARASIATFKLREGQPVGIAVTLRGNMMYSFLDRLINLGLPRTRDFQGVNP 177


>ref|NP_192040.1| 50S ribosomal protein L5 [Arabidopsis thaliana]
           gi|50400725|sp|O04603.1|RK5_ARATH RecName: Full=50S
           ribosomal protein L5, chloroplastic; Flags: Precursor
           gi|2191128|gb|AAB61015.1| belongs to the L5P family of
           ribosomal proteins [Arabidopsis thaliana]
           gi|7267628|emb|CAB80940.1| putative L5 ribosomal protein
           [Arabidopsis thaliana] gi|15810311|gb|AAL07043.1|
           putative L5 ribosomal protein [Arabidopsis thaliana]
           gi|21281101|gb|AAM45056.1| putative L5 ribosomal protein
           [Arabidopsis thaliana] gi|21592367|gb|AAM64318.1|
           putative L5 ribosomal protein [Arabidopsis thaliana]
           gi|332656607|gb|AEE82007.1| 50S ribosomal protein L5
           [Arabidopsis thaliana]
          Length = 262

 Score =  243 bits (619), Expect = 3e-62
 Identities = 123/176 (69%), Positives = 144/176 (81%)
 Frame = +3

Query: 66  MASSATLHSCFSSFHGQSPILSSPISTRFPTPSSRNQCGFSVKASNVVLVEKSEAEKVQR 245
           MAS + L S  SSFHG+   L++P S R  +P  RN     V AS  VLVEKSEAEK QR
Sbjct: 1   MASPSLLQSSASSFHGRFSPLAAPSSARMLSPPLRNVV--KVSASGTVLVEKSEAEKTQR 58

Query: 246 LKTTYLEKIVPLLKEEFAYTNMHQVPKVEKIVVNCGIGEAAQNSKGLDAAMKDLSIICGQ 425
           LKT YLE+I+P LKEEF Y N+HQVPKV+KIVVNCGIG+AAQN KGL+AAMKD+++I GQ
Sbjct: 59  LKTAYLERIIPALKEEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQ 118

Query: 426 RPVKTRARVSIATFKLREGQPIGLAVTLRGNIMYSFLDRLINLGLPRTRDFQGVSP 593
           +P+KTRAR SIATFK+RE QP+G+AVTLRG++MYSFLDRLINL LPRTRDFQGVSP
Sbjct: 119 KPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSP 174


>ref|XP_002511913.1| 50S ribosomal protein L5, putative [Ricinus communis]
           gi|223549093|gb|EEF50582.1| 50S ribosomal protein L5,
           putative [Ricinus communis]
          Length = 265

 Score =  242 bits (617), Expect = 5e-62
 Identities = 127/178 (71%), Positives = 151/178 (84%), Gaps = 3/178 (1%)
 Frame = +3

Query: 66  MASSATLHS-CFSSFHGQSPILSSPISTRFPTPSSRNQCGF-SVKASN-VVLVEKSEAEK 236
           M+S + L S   +SF GQ PI+SS  S + P  + RN  G  SV+A+  +VLVEKSEAEK
Sbjct: 1   MSSPSLLQSSAAASFRGQFPIISSHPSVKVPYGNPRNGNGVVSVRATGEIVLVEKSEAEK 60

Query: 237 VQRLKTTYLEKIVPLLKEEFAYTNMHQVPKVEKIVVNCGIGEAAQNSKGLDAAMKDLSII 416
             RLKTTYL+KIVPLL EEF+Y+N+HQVPK+EK+VVNCGIGEAAQN+KGL+AAM DL++I
Sbjct: 61  TYRLKTTYLQKIVPLLMEEFSYSNIHQVPKIEKVVVNCGIGEAAQNAKGLEAAMNDLALI 120

Query: 417 CGQRPVKTRARVSIATFKLREGQPIGLAVTLRGNIMYSFLDRLINLGLPRTRDFQGVS 590
            GQRP+KTRAR SIATFK+REGQP+G+AVTLRGN+MYSFLDRLINLGLPRTRDFQGVS
Sbjct: 121 TGQRPIKTRARNSIATFKIREGQPLGIAVTLRGNVMYSFLDRLINLGLPRTRDFQGVS 178


>ref|XP_002872896.1| ribosomal protein L5 family protein [Arabidopsis lyrata subsp.
           lyrata] gi|297318733|gb|EFH49155.1| ribosomal protein L5
           family protein [Arabidopsis lyrata subsp. lyrata]
          Length = 264

 Score =  240 bits (612), Expect = 2e-61
 Identities = 121/176 (68%), Positives = 143/176 (81%)
 Frame = +3

Query: 66  MASSATLHSCFSSFHGQSPILSSPISTRFPTPSSRNQCGFSVKASNVVLVEKSEAEKVQR 245
           MAS + L S  SSFHG+   L++P S R  +P  RN     V AS  VLVEKSEAEK  R
Sbjct: 1   MASPSLLQSSASSFHGRFSPLAAPSSARMRSPPLRNLV--KVSASGTVLVEKSEAEKTHR 58

Query: 246 LKTTYLEKIVPLLKEEFAYTNMHQVPKVEKIVVNCGIGEAAQNSKGLDAAMKDLSIICGQ 425
           LKT YLE+I+P LK+EF Y N+HQVPKV+KIVVNCGIG+AAQN KGL+AAMKD+++I GQ
Sbjct: 59  LKTAYLERIIPALKDEFKYVNIHQVPKVQKIVVNCGIGDAAQNDKGLEAAMKDIALITGQ 118

Query: 426 RPVKTRARVSIATFKLREGQPIGLAVTLRGNIMYSFLDRLINLGLPRTRDFQGVSP 593
           +P+KTRAR SIATFK+RE QP+G+AVTLRG++MYSFLDRLINL LPRTRDFQGVSP
Sbjct: 119 KPIKTRARASIATFKIREDQPLGIAVTLRGDVMYSFLDRLINLALPRTRDFQGVSP 174


>gb|ABK96601.1| unknown [Populus trichocarpa x Populus deltoides]
          Length = 267

 Score =  235 bits (600), Expect = 4e-60
 Identities = 122/176 (69%), Positives = 151/176 (85%), Gaps = 1/176 (0%)
 Frame = +3

Query: 66  MASSATLHSCFSSFHGQSPILSSPISTRFPTPSSRNQCGFSVKAS-NVVLVEKSEAEKVQ 242
           MA+++ L S  +SFHG+ P L   ++ R  T  SRN    SV+A+ +VVLV+KSEAEK  
Sbjct: 1   MATTSLLSSSAASFHGRFPTLPPRLNARV-TYGSRNGV-VSVRATGDVVLVDKSEAEKSN 58

Query: 243 RLKTTYLEKIVPLLKEEFAYTNMHQVPKVEKIVVNCGIGEAAQNSKGLDAAMKDLSIICG 422
           RLKTT+LEKIVPLL EEF+YTN+HQVPK++K+VVNCGIG+AAQN+KGLDAA+ DL++I G
Sbjct: 59  RLKTTFLEKIVPLLIEEFSYTNIHQVPKIQKVVVNCGIGDAAQNAKGLDAAINDLALITG 118

Query: 423 QRPVKTRARVSIATFKLREGQPIGLAVTLRGNIMYSFLDRLINLGLPRTRDFQGVS 590
           QRPVKTRAR S+ATFK+REGQP+G+AVTLRGN+MYSFLDRL+NLGLPRTRDFQGV+
Sbjct: 119 QRPVKTRARNSVATFKIREGQPLGIAVTLRGNLMYSFLDRLVNLGLPRTRDFQGVT 174