BLASTX nr result

ID: Coptis25_contig00009557 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009557
         (967 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002266878.1| PREDICTED: uncharacterized protein LOC100255...    67   8e-09
ref|XP_002331820.1| predicted protein [Populus trichocarpa] gi|2...    57   5e-06
emb|CAN66887.1| hypothetical protein VITISV_012135 [Vitis vinifera]    57   5e-06

>ref|XP_002266878.1| PREDICTED: uncharacterized protein LOC100255280 [Vitis vinifera]
           gi|302143706|emb|CBI22567.3| unnamed protein product
           [Vitis vinifera]
          Length = 673

 Score = 66.6 bits (161), Expect = 8e-09
 Identities = 52/169 (30%), Positives = 82/169 (48%), Gaps = 12/169 (7%)
 Frame = -3

Query: 479 SLYPSSHPSISLRQCEEKRRTDECVTLRHFEMSGTAYIKSESITQNRKEKGVEDPV-LDR 303
           +L P     ++LR+CE+K R +    L     +     +SE +T    E    + +  D 
Sbjct: 450 ALTPPKRRLMTLRECEKKGRAE--TNLASNLNARETENQSEILTNEDVEASETEEIGSDS 507

Query: 302 ECKKFNEFCVNGP---------NEWEREDNSINPNKAGDV-YTLFNSRIKANRNWRN-WE 156
           E +    F +N           NE E E N       G+V +    SRI+ N + ++ WE
Sbjct: 508 EGESLGGFIINDSEVSGGDGAYNESEEESN-------GNVDFVDIISRIRRNSDKKSKWE 560

Query: 155 SAIDMDTSFEAEPKLCMRAVCALYRQHKCQEKPMGQSLHFTSRGFSKSD 9
              DM  +F  +P+LCM+AVCALYRQ   +EK + ++++   RGFS+ D
Sbjct: 561 FEADMLAAFGKDPELCMKAVCALYRQQTSEEKTVKETIYSNQRGFSQCD 609


>ref|XP_002331820.1| predicted protein [Populus trichocarpa] gi|222875058|gb|EEF12189.1|
           predicted protein [Populus trichocarpa]
          Length = 580

 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 29/63 (46%), Positives = 41/63 (65%), Gaps = 1/63 (1%)
 Frame = -3

Query: 194 SRIKANRNWR-NWESAIDMDTSFEAEPKLCMRAVCALYRQHKCQEKPMGQSLHFTSRGFS 18
           SR + +++ +  WE   DM + F  +P+LCM+AVCALYRQ   +EK   ++LH   RGFS
Sbjct: 449 SRFQRSKDHKFKWEFEGDMLSDFGKDPELCMKAVCALYRQQSDEEKLNKETLHGNGRGFS 508

Query: 17  KSD 9
           K D
Sbjct: 509 KFD 511


>emb|CAN66887.1| hypothetical protein VITISV_012135 [Vitis vinifera]
          Length = 628

 Score = 57.4 bits (137), Expect = 5e-06
 Identities = 37/104 (35%), Positives = 56/104 (53%), Gaps = 5/104 (4%)
 Frame = -3

Query: 305 RECKKFNEFCVN---GPNEWEREDNS-INPNKAGDVYTLFNSRIKANRNWRN-WESAIDM 141
           REC+K      N     N  E E+ S I  N+  +        I+ N + ++ WE   DM
Sbjct: 467 RECEKKGRAETNLASNLNARETENQSEILTNEDVEASETEEXGIRRNSDKKSKWEFEADM 526

Query: 140 DTSFEAEPKLCMRAVCALYRQHKCQEKPMGQSLHFTSRGFSKSD 9
             +F  +P+LCM+AVCALYRQ   +EK + ++++   RGFS+ D
Sbjct: 527 LAAFGKDPELCMKAVCALYRQQTSEEKTVKETIYSNQRGFSQCD 570


Top