BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009467
         (1470 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR18786.1| class S F-box protein [Nicotiana alata]                127   1e-26
gb|ABR18783.1| class S F-box protein [Nicotiana alata]                124   6e-26
ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|2...   121   4e-25
gb|ABR18787.1| class S F-box protein [Nicotiana alata]                120   1e-24
ref|XP_003598330.1| F-box protein [Medicago truncatula] gi|35548...   119   3e-24

>gb|ABR18786.1| class S F-box protein [Nicotiana alata]
          Length = 388

 Score =  127 bits (318), Expect = 1e-26
 Identities = 110/380 (28%), Positives = 176/380 (46%), Gaps = 34/380 (8%)
 Frame = -1

Query: 1374 EDLFSKLPIDIVFDILSRLPLKTISQCRWVSKTWYSFIQHPPFTQLHFTRTTPIPCAAFI 1195
            + +  KLP D+V  ILSR  +K++ + +++SK+WY+ IQ   F  +H  R+T I    FI
Sbjct: 4    DGIMKKLPEDVVIYILSRFSVKSLLRFKFISKSWYTLIQSSTFINVHLNRST-ITKNEFI 62

Query: 1194 GGRYSQSYVTDPECFLNSKKRVTAYD-----LELKEFKDNFRVPNGSWICFDVVGTVNGL 1030
               +S+S+  + E F N    +++ D     + L++    +     ++   ++VG  NGL
Sbjct: 63   --LFSRSFRIETEGFKNVLSIISSDDYNDLNVVLQDLDLPYLTFTPNYHFNELVGPCNGL 120

Query: 1029 ICFSEMGNYCSSPYYICNPITLDYVILPRSPMIC-YGHMAS-----GFGFDSVSNQYKVF 868
            I  ++  +       + NP T +Y++LP SP +C  G+  S     GFGFDS+ N YK  
Sbjct: 121  IVLTDDDDI----IVLFNPATKNYMLLPPSPFVCSKGYHRSFIGGVGFGFDSIGNDYKFV 176

Query: 867  RIL------------RSNEVEVFTLGSDCWRPIRTNTSFIRSM--NRSHALL-NGCIHWV 733
            RI             R  +VEV+ L SD WR +      + ++  N+   +L NG  HW 
Sbjct: 177  RISEVFLDTYWGPEEREQKVEVYDLRSDSWRDLNHVDQQLPTIFWNQCFEMLHNGAFHWY 236

Query: 732  ADSRVDGKACTVILSLNVATEEFSIIQMPSISNGFKRSSSYELMVLGERL---CVSLCDT 562
            A     G     IL  + +TE F  ++MP   N +     Y L V+ E L   C    D+
Sbjct: 237  A----VGDLTYEILCFDFSTEIFRSMKMPESCNAYD-GKRYSLAVVNESLTLICYPSPDS 291

Query: 561  RADR-----ETWVMKEYGKLGSWTEEYIFPQEFYPRLSHRCSHGIMEIRNNELVMFSKAL 397
              D+     + W+M EYG   SWT++YI        +S       + I  + L++     
Sbjct: 292  EIDQTQNTMDIWIMMEYGVNESWTKKYI--------ISPLPIESPLTIWRDHLLLLQSKT 343

Query: 396  GYYHCENKTFNPAKVVDVQG 337
            G     N   N  K  D++G
Sbjct: 344  GQLISYNLRSNEVKEFDLRG 363


>gb|ABR18783.1| class S F-box protein [Nicotiana alata]
          Length = 388

 Score =  124 bits (311), Expect = 6e-26
 Identities = 105/374 (28%), Positives = 164/374 (43%), Gaps = 32/374 (8%)
 Frame = -1

Query: 1359 KLPIDIVFDILSRLPLKTISQCRWVSKTWYSFIQHPPFTQLHFTRTTPIPCAAFIGGRYS 1180
            KLP D+VF +L R P+K++ + + +SK WY FIQ   F  LH  RTT +     +   + 
Sbjct: 8    KLPEDLVFCMLLRCPVKSLMRFKCISKVWYHFIQSTTFINLHLNRTTSVENEFIL---FK 64

Query: 1179 QSYVTDPECFLNSKKRVTAYDLE-----LKEFKDNFRVPNGSWICFDVVGTVNGLICFSE 1015
             S   D   F N    ++ +D         +   ++   N S   F ++G  NGLI  ++
Sbjct: 65   HSIKEDTGEFKNVLSFLSGHDNGALNPLFPDIDVSYMASNCSCTFFPLIGPCNGLIALTD 124

Query: 1014 MGNYCSSPYYICNPITLDYVILPRSPMICYGHM-----ASGFGFDSVSNQYKVFRIL--- 859
                 +    + NP T ++ +LP SP  C         A GFGFDS++N YKV RI    
Sbjct: 125  -----TITTILINPATRNFRLLPPSPFGCPNGYHRSVEALGFGFDSIANNYKVVRISEIF 179

Query: 858  ----------RSNEVEVFTLGSDCWRPI-RTNTSFIRSMNRSHALLNGCIHWVADSRVDG 712
                      R ++V+V+ L  D WR +       I  +  S  L N  +HW A + +  
Sbjct: 180  WNPVYDYPGPRESKVDVYDLSIDSWRELDHVQVPLIYWLPCSETLYNEVVHWFASTDLS- 238

Query: 711  KACTVILSLNVATEEFSIIQMPSISNGFKRSSSYELMVLGERLC-------VSLCDTRAD 553
                VIL  ++ TE F  I+MP  +  F  +  Y L++L E L        +S+   +  
Sbjct: 239  ---LVILCFDMCTEIFRNIKMPD-TFIFDNAEFYGLVILSESLTLICYPNPISINPIQEL 294

Query: 552  RETWVMKEYGKLGSW-TEEYIFPQEFYPRLSHRCSHGIMEIRNNELVMFSKALGYYHCEN 376
               WVMKEYG   SW  ++ I P    P +        +++  N +++F    G      
Sbjct: 295  THIWVMKEYGVSESWFLKDTIRP----PPIERP-----LDVWKNNIILFESKSGLLVSYK 345

Query: 375  KTFNPAKVVDVQGC 334
               N  + + + GC
Sbjct: 346  LNSNEVEELKLHGC 359


>ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1|
            predicted protein [Populus trichocarpa]
          Length = 477

 Score =  121 bits (304), Expect = 4e-25
 Identities = 110/379 (29%), Positives = 163/379 (43%), Gaps = 12/379 (3%)
 Frame = -1

Query: 1362 SKLPIDIVFDILSRLPLKTISQCRWVSKTWYSFIQHPPFTQLHFTRTTPIPCAAFI-GGR 1186
            S LPI  + DILSRLP KTI  C  V K W   I  P F +LH TR    P +  +   R
Sbjct: 33   SALPIQNLVDILSRLPFKTIFSCMCVCKKWKDLILAPDFAKLHHTRA---PASLILRSHR 89

Query: 1185 YSQSYVTDPECFLNSKKRVTAYDLELKEFKDNFRVPNGSWICFDVVGTVNGLICFSEMGN 1006
            + +       C L+ +           +   +F  P G+   F++V T NGLIC      
Sbjct: 90   HGRRRRPRSLCLLDLEASDICSPDAAVKLSPDFGFPTGN---FEIVNTCNGLICIRHF-- 144

Query: 1005 YCSSPYYICNPITLDYVILPRSPMICYGHMASGFGFDSVSNQYKVFRILRSN---EVEVF 835
            +  +   I NP+  DY+ LP +      ++ S FG    +++YKV + ++     E E+ 
Sbjct: 145  HSPNDISILNPLVGDYITLPLTKKKHKSYVFSWFGHSPKTDEYKVIQFVQQPSKLEAEIH 204

Query: 834  TLGSDCWRPIRTNT-SFIRSMNRSHALLNGCIHWVADSRVDGKACTVILSLNVATEEFSI 658
            TLG   W  I     S    M   +A + GC+HW+ +   D      I  L    E F  
Sbjct: 205  TLGKGTWTSIHGGALSPPIDMRCHNAFVGGCLHWIVN---DPSKSEFIYCLEFGRELFQP 261

Query: 657  IQMPSI--SNGFKRSSSYELMVLGERLCVSLCDTRADRETWVMKEYGKLGSWTEEYIFPQ 484
            +  P     N   R+    L VLG  L           + WVMK+YG   SWT+E+I   
Sbjct: 262  VAAPPHLGPNDKDRTGDMMLGVLGGCLYFFDYPLGDSFDIWVMKQYGVQESWTKEFILKN 321

Query: 483  EFYPRLSH-RCSHGIMEIRNNELVMF--SKALGYYHCENKTFNPAKVVDVQGCGVGMTDF 313
                 + +      I  + N E++M   SKA+  Y+ E+++F   K+  +Q         
Sbjct: 322  PSTDIIWYWDLYRPISLLSNGEILMSHKSKAMVSYNPEDRSFRFLKIYGIQNFEANP--- 378

Query: 312  QIFFTGSLVSPRII--GDN 262
               +  S +SPR I  G+N
Sbjct: 379  ---YVPSFLSPREIVKGEN 394


>gb|ABR18787.1| class S F-box protein [Nicotiana alata]
          Length = 392

 Score =  120 bits (300), Expect = 1e-24
 Identities = 95/330 (28%), Positives = 143/330 (43%), Gaps = 38/330 (11%)
 Frame = -1

Query: 1371 DLFSKLPIDIVFDILSRLPLKTISQCRWVSKTWYSFIQHPPFTQLHFTRTTPIPCAAFIG 1192
            D  +KLP D++ DI+ RLP K++ + + VSKTWY  I  P F  +H+      P   FI 
Sbjct: 6    DQRTKLPYDVMIDIMKRLPAKSVIRIKCVSKTWYYMINSPDFISIHY--NYDYPSKHFIV 63

Query: 1191 GRYSQSYVTDPECFLNSKKRVTAY--DLELKEFKDNFRVPNGSWICFDVVGTVNGLICFS 1018
             +       +   + N K  ++ +  D  LK    N    +  +I  ++ G  NG++C  
Sbjct: 64   FKRYLEIDAEESIYYNGKNMLSVHCNDDSLKSVAPNTEYLD-DYIGVNIAGPCNGIVC-- 120

Query: 1017 EMGNYCSSPYYICNPITLDY-----VILPRSPMIC-------YGHMASGFGFDSVSNQYK 874
             +G+Y     Y  NP   ++      ILP  P +        +  M  G GFD  +N YK
Sbjct: 121  -IGSYRGIVLY--NPTLREFWELPPSILPPPPYLSSDKKLNYWMDMTMGIGFDPNTNDYK 177

Query: 873  VFRILRS----------------NEVEVFTLGSDCWRPIRTNTSFIRSMNRSHALLNGCI 742
            V RILR                 ++VEV+ L ++ WR I+     + +++ SH   NG  
Sbjct: 178  VVRILRPAHEYTFEDFDNHIRDVSKVEVYNLSTNSWRRIKDLECLVDTLHCSHVFFNGAF 237

Query: 741  HWVADSRVDGKACTVILSLNVATEEFSIIQMPSISNGFKRSSSYELMVLGERLCVSLCDT 562
            HW   ++ D      I+S N + E F +I  P    G        L VL E L +     
Sbjct: 238  HWRRYTKSDD---YFIVSFNFSIESFQMIPSP---EGLTDEGRKSLFVLSESLALICFTE 291

Query: 561  RADRE--------TWVMKEYGKLGSWTEEY 496
               RE         WVMK+YG   SW +E+
Sbjct: 292  NYPREMLVHQSIDIWVMKKYGVRESWIKEF 321


>ref|XP_003598330.1| F-box protein [Medicago truncatula] gi|355487378|gb|AES68581.1| F-box
            protein [Medicago truncatula]
          Length = 400

 Score =  119 bits (297), Expect = 3e-24
 Identities = 100/338 (29%), Positives = 157/338 (46%), Gaps = 22/338 (6%)
 Frame = -1

Query: 1356 LPIDIVFDILSRLPLKTISQCRWVSKTWYSFIQHPPFTQLHFTRTTP--IPCAAFIGGRY 1183
            LP D+V +IL RLP+K + Q R   K+W S I    F + H + +T   + C ++ G  Y
Sbjct: 33   LPFDLVAEILCRLPVKLLLQLRCFCKSWNSLITDHKFAKKHLSLSTTRCLHCVSYTGFPY 92

Query: 1182 ---SQSYVTDPECFLNSKKRVTAYDLELKEFKDNFRVPNGSWICFDVVGTVNGLICFSEM 1012
                +SY   P    N    +T Y  E   +  +   P     CF  VG+ NG++CF+  
Sbjct: 93   LYVLKSYPLGP-VLNNLTTNITEY--EYSPYNIHGDHPRLCVDCF--VGSCNGILCFT-A 146

Query: 1011 GNYCSSPYYICNPITLDYVILP--RSPMICYGHMASGFGFDSVSNQYKVFRILR------ 856
            G Y  S   + NP        P  + P   + HMA GFG+DS ++ YKV  +L+      
Sbjct: 147  GIYKIS-VILWNPSIRKIKEFPLFQKPNWSFTHMAFGFGYDSFNDNYKVVVVLQGLIQDS 205

Query: 855  ------SNEVEVFTLGSDCWRPIRTNTSFIRSMNRSHALLNGCIHWVADSRVDGKACTVI 694
                    EV+V T  ++CW+ I+  T       +S   ++  I+W+A    DG++   I
Sbjct: 206  SGNIACKTEVKVHTSITNCWKNIQEFTFGSILPEQSGKFVSDTINWLAVIDFDGRSPRFI 265

Query: 693  LSLNVATEEFSIIQMPSISNGFKRSSSYELMVLGERLCVSLCDTRAD---RETWVMKEYG 523
            +S ++  E +  + +P  S G    +   L VL + LCV+  D+  D   ++ W+MKEYG
Sbjct: 266  ISFDLEKESYQKVLLPD-SGGVNVCNFLALFVLRDCLCVTYGDSDFDSVLKDVWIMKEYG 324

Query: 522  KLGSWTEEYIFPQEFYPRLSHRCSHGIMEIRNNELVMF 409
               SWT+ +         LS R   G+  I    + +F
Sbjct: 325  NKDSWTKLF--------TLSCRVDRGVSHISAKPVYLF 354