BLASTX nr result
ID: Coptis25_contig00009445
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00009445
(1148 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containi... 92 4e-30
ref|XP_002523877.1| pentatricopeptide repeat-containing protein,... 89 4e-23
ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containi... 88 1e-21
ref|XP_003626823.1| Pentatricopeptide repeat-containing protein ... 75 1e-21
ref|XP_003596871.1| Pentatricopeptide repeat-containing protein ... 75 3e-21
>ref|XP_003543417.1| PREDICTED: pentatricopeptide repeat-containing protein
At1g03540-like [Glycine max]
Length = 315
Score = 92.4 bits (228), Expect(3) = 4e-30
Identities = 42/55 (76%), Positives = 47/55 (85%)
Frame = +3
Query: 117 DMGRGFFKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALILRIEVEPDDALW 281
D GR + KMME RFGVKPGL H+TCMVDMLGR G VEEAE LILR+EV+PD+ALW
Sbjct: 227 DKGREYLKMMEVRFGVKPGLHHYTCMVDMLGRVGQVEEAEKLILRMEVKPDEALW 281
Score = 45.1 bits (105), Expect(3) = 4e-30
Identities = 19/31 (61%), Positives = 25/31 (80%)
Frame = +1
Query: 1 MIAGYGMHGFSSEVFKQFEEMLDAGESPGGV 93
M+AGYGMHG EVF+ F++M++AGE P GV
Sbjct: 181 MMAGYGMHGKCGEVFELFDKMVEAGERPDGV 211
Score = 41.6 bits (96), Expect(3) = 4e-30
Identities = 17/23 (73%), Positives = 20/23 (86%)
Frame = +2
Query: 278 MGACKLHGKMEVAERVVEKVYGR 346
+GACK HGK+EV ERV E+VYGR
Sbjct: 285 LGACKTHGKLEVTERVEERVYGR 307
>ref|XP_002523877.1| pentatricopeptide repeat-containing protein, putative [Ricinus
communis] gi|223536965|gb|EEF38603.1| pentatricopeptide
repeat-containing protein, putative [Ricinus communis]
Length = 302
Score = 89.0 bits (219), Expect(3) = 4e-23
Identities = 38/55 (69%), Positives = 47/55 (85%)
Frame = +3
Query: 117 DMGRGFFKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALILRIEVEPDDALW 281
+ G +F MMEERFGVKP LEH+TCMVDMLGRAG VEEAE L++R+E++PD+ LW
Sbjct: 223 EKGAEYFGMMEERFGVKPSLEHYTCMVDMLGRAGRVEEAEELVMRMEIKPDEVLW 277
Score = 33.5 bits (75), Expect(3) = 4e-23
Identities = 16/33 (48%), Positives = 19/33 (57%)
Frame = +1
Query: 1 MIAGYGMHGFSSEVFKQFEEMLDAGESPGGVNL 99
M+AGYGMHG EV F M++ G S V L
Sbjct: 177 MMAGYGMHGKGGEVLVLFNRMVEEGSSVDAVCL 209
Score = 33.1 bits (74), Expect(3) = 4e-23
Identities = 12/21 (57%), Positives = 18/21 (85%)
Frame = +2
Query: 278 MGACKLHGKMEVAERVVEKVY 340
+G+CK+HGK++VAERV V+
Sbjct: 281 LGSCKIHGKVDVAERVSRNVF 301
>ref|XP_002274172.1| PREDICTED: pentatricopeptide repeat-containing protein At3g46790,
chloroplastic [Vitis vinifera]
Length = 313
Score = 88.2 bits (217), Expect(2) = 1e-21
Identities = 41/53 (77%), Positives = 46/53 (86%)
Frame = +3
Query: 123 GRGFFKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALILRIEVEPDDALW 281
GR +F MMEERFGV+P LEH+TCMVDMLGRAG VEEAE LI +EVEPD+ALW
Sbjct: 228 GRKYFGMMEERFGVRPRLEHYTCMVDMLGRAGRVEEAEELIEGMEVEPDEALW 280
Score = 42.4 bits (98), Expect(2) = 1e-21
Identities = 17/23 (73%), Positives = 21/23 (91%)
Frame = +2
Query: 278 MGACKLHGKMEVAERVVEKVYGR 346
+ +CK+HGK+EVAERV EKVYGR
Sbjct: 284 LASCKIHGKVEVAERVAEKVYGR 306
>ref|XP_003626823.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|355520845|gb|AET01299.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 355
Score = 75.1 bits (183), Expect(3) = 1e-21
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 117 DMGRGFFKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALILRIEVEPDDAL 278
+ GR F+MM+ RFGVKP + H+TCMVDMLGR G VEEAE L L+++V PD+AL
Sbjct: 227 EKGREIFEMMKVRFGVKPDVRHYTCMVDMLGRVGLVEEAEKLTLKMDVRPDEAL 280
Score = 38.5 bits (88), Expect(3) = 1e-21
Identities = 17/32 (53%), Positives = 21/32 (65%)
Frame = +1
Query: 1 MIAGYGMHGFSSEVFKQFEEMLDAGESPGGVN 96
MIAGYGMHG EVF+ F M++ GE V+
Sbjct: 181 MIAGYGMHGRFEEVFEMFNRMVEVGERMDNVS 212
Score = 36.6 bits (83), Expect(3) = 1e-21
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 281 GACKLHGKMEVAERVVEKVYG 343
GACK HG+++VAERV E+ YG
Sbjct: 286 GACKTHGRVDVAERVAERFYG 306
>ref|XP_003596871.1| Pentatricopeptide repeat-containing protein [Medicago truncatula]
gi|124359886|gb|ABD32760.2| Tetratricopeptide-like
helical [Medicago truncatula]
gi|355485919|gb|AES67122.1| Pentatricopeptide
repeat-containing protein [Medicago truncatula]
Length = 316
Score = 75.1 bits (183), Expect(3) = 3e-21
Identities = 34/54 (62%), Positives = 43/54 (79%)
Frame = +3
Query: 117 DMGRGFFKMMEERFGVKPGLEHFTCMVDMLGRAGHVEEAEALILRIEVEPDDAL 278
+ GR F+MM+ RFGVKP + H+TCMVDMLGR G VEEAE L L+++V PD+AL
Sbjct: 227 EKGREIFEMMKVRFGVKPDVRHYTCMVDMLGRVGLVEEAEKLTLKMDVRPDEAL 280
Score = 37.4 bits (85), Expect(3) = 3e-21
Identities = 16/32 (50%), Positives = 21/32 (65%)
Frame = +1
Query: 1 MIAGYGMHGFSSEVFKQFEEMLDAGESPGGVN 96
M+AGYGMHG EVF+ F M++ GE V+
Sbjct: 181 MMAGYGMHGRFEEVFEMFNRMVEVGERMDNVS 212
Score = 36.6 bits (83), Expect(3) = 3e-21
Identities = 14/21 (66%), Positives = 18/21 (85%)
Frame = +2
Query: 281 GACKLHGKMEVAERVVEKVYG 343
GACK HG+++VAERV E+ YG
Sbjct: 286 GACKTHGRVDVAERVAERFYG 306