BLASTX nr result

ID: Coptis25_contig00009381 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009381
         (246 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004162895.1| PREDICTED: uncharacterized LOC101222348 isof...    78   8e-13
ref|XP_004148806.1| PREDICTED: uncharacterized protein LOC101222...    78   8e-13
gb|ACU23298.1| unknown [Glycine max]                                   74   9e-12
gb|AFK44959.1| unknown [Lotus japonicus]                               69   5e-10
ref|XP_003592142.1| RNA-binding protein with multiple splicing [...    68   9e-10

>ref|XP_004162895.1| PREDICTED: uncharacterized LOC101222348 isoform 1 [Cucumis sativus]
           gi|449506964|ref|XP_004162896.1| PREDICTED:
           uncharacterized LOC101222348 isoform 2 [Cucumis sativus]
          Length = 257

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 63  EPSLMGAPRSVGSDMLPNGRGVMGFNGQLPADTMGKPGREGLPLPPDATNTLYIEGLPPD 242
           +P +M  P +V  D+ PNGR  + +   LP D+M +PGRE +PLPPDA+NTLY+EGLPPD
Sbjct: 110 DPIVMSRPPAVSPDLAPNGRN-LEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPD 168

Query: 243 S 245
           S
Sbjct: 169 S 169


>ref|XP_004148806.1| PREDICTED: uncharacterized protein LOC101222348 isoform 1 [Cucumis
           sativus] gi|449462156|ref|XP_004148807.1| PREDICTED:
           uncharacterized protein LOC101222348 isoform 2 [Cucumis
           sativus]
          Length = 257

 Score = 77.8 bits (190), Expect = 8e-13
 Identities = 34/61 (55%), Positives = 45/61 (73%)
 Frame = +3

Query: 63  EPSLMGAPRSVGSDMLPNGRGVMGFNGQLPADTMGKPGREGLPLPPDATNTLYIEGLPPD 242
           +P +M  P +V  D+ PNGR  + +   LP D+M +PGRE +PLPPDA+NTLY+EGLPPD
Sbjct: 110 DPIVMSRPPAVSPDLAPNGRN-LEYGNHLPVDSMSRPGRETVPLPPDASNTLYVEGLPPD 168

Query: 243 S 245
           S
Sbjct: 169 S 169


>gb|ACU23298.1| unknown [Glycine max]
          Length = 242

 Score = 74.3 bits (181), Expect = 9e-12
 Identities = 34/63 (53%), Positives = 45/63 (71%)
 Frame = +3

Query: 57  MGEPSLMGAPRSVGSDMLPNGRGVMGFNGQLPADTMGKPGREGLPLPPDATNTLYIEGLP 236
           + +PS+MG     G D+ PNGRGV  + GQLP D + +PG E + LPPDA++TLY+EGLP
Sbjct: 93  LADPSVMGRHGGGGPDLAPNGRGV-NYGGQLPVDAVSRPGPETVSLPPDASSTLYVEGLP 151

Query: 237 PDS 245
            DS
Sbjct: 152 SDS 154


>gb|AFK44959.1| unknown [Lotus japonicus]
          Length = 239

 Score = 68.6 bits (166), Expect = 5e-10
 Identities = 31/63 (49%), Positives = 43/63 (68%)
 Frame = +3

Query: 57  MGEPSLMGAPRSVGSDMLPNGRGVMGFNGQLPADTMGKPGREGLPLPPDATNTLYIEGLP 236
           + + + MG     G D+ PNGRG   + GQ P D++ +PG E +PLPPDA++TLY+EGLP
Sbjct: 90  LADHAAMGRHGGGGPDIAPNGRG-FNYGGQPPVDSVSRPGHETVPLPPDASSTLYVEGLP 148

Query: 237 PDS 245
            DS
Sbjct: 149 SDS 151


>ref|XP_003592142.1| RNA-binding protein with multiple splicing [Medicago truncatula]
           gi|355481190|gb|AES62393.1| RNA-binding protein with
           multiple splicing [Medicago truncatula]
          Length = 252

 Score = 67.8 bits (164), Expect = 9e-10
 Identities = 35/65 (53%), Positives = 44/65 (67%), Gaps = 2/65 (3%)
 Frame = +3

Query: 57  MGEPSLMGAPRSVGS--DMLPNGRGVMGFNGQLPADTMGKPGREGLPLPPDATNTLYIEG 230
           +G+PS MG    VG   D+  NGR V  F GQLP D + +PG E +PLP DA++TLY+EG
Sbjct: 100 LGDPSAMGHLSGVGGGPDLSRNGRDV-NFGGQLPIDAVSRPGPETIPLPRDASSTLYVEG 158

Query: 231 LPPDS 245
           LP DS
Sbjct: 159 LPSDS 163


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