BLASTX nr result

ID: Coptis25_contig00009294 seq

BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009294
         (303 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|ABR16132.1| unknown [Picea sitchensis]                              49   1e-10
ref|XP_002978447.1| hypothetical protein SELMODRAFT_109026 [Sela...    49   2e-10
ref|XP_002970284.1| hypothetical protein SELMODRAFT_147068 [Sela...    49   2e-10
ref|XP_002978280.1| hypothetical protein SELMODRAFT_418040 [Sela...    49   4e-10
ref|XP_003569596.1| PREDICTED: DNA repair helicase XPB2-like [Br...    47   1e-09

>gb|ABR16132.1| unknown [Picea sitchensis]
          Length = 772

 Score = 48.9 bits (115), Expect(2) = 1e-10
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   ALYVMNPNKFRACEFLIQFHEPQ 70
           ALYVMNPNKFRACEFLI+FHE Q
Sbjct: 502 ALYVMNPNKFRACEFLIRFHEQQ 524



 Score = 42.0 bits (97), Expect(2) = 1e-10
 Identities = 21/27 (77%), Positives = 23/27 (85%)
 Frame = +1

Query: 76  TNHQERTRILLHTFKKSPDVNTVFLSK 156
           T+H ERTRIL + FK SPDVNTVFLSK
Sbjct: 555 TSHSERTRIL-YAFKHSPDVNTVFLSK 580


>ref|XP_002978447.1| hypothetical protein SELMODRAFT_109026 [Selaginella moellendorffii]
           gi|300153796|gb|EFJ20433.1| hypothetical protein
           SELMODRAFT_109026 [Selaginella moellendorffii]
          Length = 733

 Score = 48.9 bits (115), Expect(2) = 2e-10
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   ALYVMNPNKFRACEFLIQFHEPQ 70
           ALYVMNPNKFRACEFLI+FHE Q
Sbjct: 467 ALYVMNPNKFRACEFLIRFHEQQ 489



 Score = 40.8 bits (94), Expect(2) = 2e-10
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +1

Query: 76  TNHQERTRILLHTFKKSPDVNTVFLSK 156
           T+H ERT+IL + FK SPDVNTVFLSK
Sbjct: 520 TSHHERTKIL-YAFKHSPDVNTVFLSK 545


>ref|XP_002970284.1| hypothetical protein SELMODRAFT_147068 [Selaginella moellendorffii]
           gi|300161800|gb|EFJ28414.1| hypothetical protein
           SELMODRAFT_147068 [Selaginella moellendorffii]
          Length = 713

 Score = 48.9 bits (115), Expect(2) = 2e-10
 Identities = 21/23 (91%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   ALYVMNPNKFRACEFLIQFHEPQ 70
           ALYVMNPNKFRACEFLI+FHE Q
Sbjct: 447 ALYVMNPNKFRACEFLIRFHEQQ 469



 Score = 40.8 bits (94), Expect(2) = 2e-10
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +1

Query: 76  TNHQERTRILLHTFKKSPDVNTVFLSK 156
           T+H ERT+IL + FK SPDVNTVFLSK
Sbjct: 500 TSHHERTKIL-YAFKHSPDVNTVFLSK 525


>ref|XP_002978280.1| hypothetical protein SELMODRAFT_418040 [Selaginella moellendorffii]
           gi|300154301|gb|EFJ20937.1| hypothetical protein
           SELMODRAFT_418040 [Selaginella moellendorffii]
          Length = 747

 Score = 48.5 bits (114), Expect(2) = 4e-10
 Identities = 20/23 (86%), Positives = 22/23 (95%)
 Frame = +2

Query: 2   ALYVMNPNKFRACEFLIQFHEPQ 70
           ALYVMNPNKFRACEFL++FHE Q
Sbjct: 480 ALYVMNPNKFRACEFLVRFHEQQ 502



 Score = 40.4 bits (93), Expect(2) = 4e-10
 Identities = 19/27 (70%), Positives = 23/27 (85%)
 Frame = +1

Query: 76  TNHQERTRILLHTFKKSPDVNTVFLSK 156
           T+H ERT+IL + FK SPDVNT+FLSK
Sbjct: 533 TSHHERTKIL-YAFKHSPDVNTIFLSK 558


>ref|XP_003569596.1| PREDICTED: DNA repair helicase XPB2-like [Brachypodium distachyon]
          Length = 766

 Score = 47.4 bits (111), Expect(2) = 1e-09
 Identities = 20/22 (90%), Positives = 21/22 (95%)
 Frame = +2

Query: 5   LYVMNPNKFRACEFLIQFHEPQ 70
           LYVMNPNKFRACEFLI+FHE Q
Sbjct: 503 LYVMNPNKFRACEFLIRFHEQQ 524



 Score = 40.0 bits (92), Expect(2) = 1e-09
 Identities = 20/27 (74%), Positives = 23/27 (85%)
 Frame = +1

Query: 76  TNHQERTRILLHTFKKSPDVNTVFLSK 156
           T+H ERTRIL + FK SP+VNTVFLSK
Sbjct: 555 TSHAERTRIL-YQFKNSPEVNTVFLSK 580


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