BLASTX nr result
ID: Coptis25_contig00009211
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00009211
(1674 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_002298144.1| predicted protein [Populus trichocarpa] gi|2... 106 2e-20
ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|2... 106 2e-20
ref|XP_002320506.1| f-box family protein [Populus trichocarpa] g... 105 5e-20
ref|XP_002301588.1| f-box family protein [Populus trichocarpa] g... 102 3e-19
ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vi... 99 4e-18
>ref|XP_002298144.1| predicted protein [Populus trichocarpa] gi|222845402|gb|EEE82949.1|
predicted protein [Populus trichocarpa]
Length = 391
Score = 106 bits (264), Expect = 2e-20
Identities = 94/315 (29%), Positives = 151/315 (47%), Gaps = 11/315 (3%)
Frame = +2
Query: 92 KKVTTRMKKNNLDMKLGEIDVVSKLPLDVVFDIFARLPLKTISQCRWVCKRWYDVVLHPR 271
K+ TR+ + L E LP ++ DI +RLP++ ++QC+ VCK W D++ P
Sbjct: 3 KRYRTRLYERKC---LEEPSSTPTLPAEIFVDILSRLPVEAMTQCKSVCKSWRDLLSTPY 59
Query: 272 FAQVHFA----SNRLQCFAFRDRYRKFYMIDNECFDHFETQVRAYNLEFNEFKENFKAPR 439
FA++HFA S+ L C ++ + + C ++ N FK P+
Sbjct: 60 FARLHFAKAKPSSLLFCHCSGNKTKLY------CCHIHSSRGSNINNAMVSMPTKFKLPK 113
Query: 440 FVKQYEVVGSVNGLICFAPARENIYQTSKSRYYICNPITGDYLML--PKSPKN-HI-RPI 607
+ +VVGS NGL+C + K ++YICNPITG+Y+ + PK + H+ PI
Sbjct: 114 NTFRGKVVGSSNGLLCLSEIHR-----MKKKFYICNPITGEYIGIAGPKVDQGWHVFEPI 168
Query: 608 ASGFGFDSLNNVYKVL--RILSDXXXXXXXXXXYTFGSDCWRVVALNVPYISDMNLSN-V 778
GF ++ N K+L R+ +T GS+ WR N+ ++L V
Sbjct: 169 --GFFYNPQNQQCKILMPRVRVGYGNFPGSGQIFTLGSNSWR----NIDIPGHLHLIRAV 222
Query: 779 HVNNCLYWVACTSIEIAIIVSFNMATEEFSTIQLPNIGKMSRTGTLIVLRKQLCLIIDGL 958
+N L+W+ ++ + I SF+M E+ +I LP+ M T +L L LC I D
Sbjct: 223 PLNGSLHWI--STRDDRHISSFDMENEQALSIALPDQVVM-HTASLAGLGNFLC-IFDNE 278
Query: 959 FDIETEMWEMKFYRI 1003
+ E +W MK Y +
Sbjct: 279 YP-EFNIWVMKEYGV 292
>ref|XP_002326594.1| predicted protein [Populus trichocarpa] gi|222833916|gb|EEE72393.1|
predicted protein [Populus trichocarpa]
Length = 477
Score = 106 bits (264), Expect = 2e-20
Identities = 85/307 (27%), Positives = 131/307 (42%), Gaps = 13/307 (4%)
Frame = +2
Query: 155 VSKLPLDVVFDIFARLPLKTISQCRWVCKRWYDVVLHPRFAQVHFASN------RLQCFA 316
+S LP+ + DI +RLP KTI C VCK+W D++L P FA++H R
Sbjct: 32 ISALPIQNLVDILSRLPFKTIFSCMCVCKKWKDLILAPDFAKLHHTRAPASLILRSHRHG 91
Query: 317 FRDRYRKFYMIDNECFDHFETQVRAYNLEFNEFKENFKAPRFVKQYEVVGSVNGLICFAP 496
R R R ++D E D + +F P +E+V + NGLIC
Sbjct: 92 RRRRPRSLCLLDLEASDICSPDAAV------KLSPDFGFP--TGNFEIVNTCNGLICIR- 142
Query: 497 ARENIYQTSKSRYYICNPITGDYLMLPKSPKNHIRPIASGFGFDSLNNVYKVLRILSDXX 676
+ S + I NP+ GDY+ LP + K H + S FG + YKV++ +
Sbjct: 143 -----HFHSPNDISILNPLVGDYITLPLTKKKHKSYVFSWFGHSPKTDEYKVIQFVQQ-- 195
Query: 677 XXXXXXXXYTFGSDCWRVV---ALNVPYISDMNLSNVHVNNCLYWVACTSIEIAIIVSFN 847
+T G W + AL+ P DM N V CL+W+ + I
Sbjct: 196 PSKLEAEIHTLGKGTWTSIHGGALSPPI--DMRCHNAFVGGCLHWIVNDPSKSEFIYCLE 253
Query: 848 MATEEFSTIQL-PNIG--KMSRTGTLIVLRKQLCL-IIDGLFDIETEMWEMKFYRILGSL 1015
E F + P++G RTG +++ CL D ++W MK Y + S
Sbjct: 254 FGRELFQPVAAPPHLGPNDKDRTGDMMLGVLGGCLYFFDYPLGDSFDIWVMKQYGVQESW 313
Query: 1016 AEEYVIQ 1036
+E++++
Sbjct: 314 TKEFILK 320
>ref|XP_002320506.1| f-box family protein [Populus trichocarpa]
gi|222861279|gb|EEE98821.1| f-box family protein [Populus
trichocarpa]
Length = 422
Score = 105 bits (261), Expect = 5e-20
Identities = 88/317 (27%), Positives = 142/317 (44%), Gaps = 25/317 (7%)
Frame = +2
Query: 164 LPLDVVFDIFARLPLKTISQCRWVCKRWYDVVLHPRFAQVHFASNR---------LQC-F 313
LP ++ DI +RLP+ ++ Q + VC+ W +V P+ ++ + + L C F
Sbjct: 28 LPREIAHDILSRLPITSLVQFKCVCRAWRALVQDPQLVDLYLSCSTQDTDHPCLILHCDF 87
Query: 314 AFRDRYRKFYMIDNECFDHFETQVRAYNLEFNEFKENFKAPRFVKQYEVVGSVNGLICFA 493
R+ Y +D + + +V+ F+ + ++EVVGS NGL+C +
Sbjct: 88 PIRNN---LYFVDFAAHEEEKEKVKRIPAPFSSM---------MPEFEVVGSCNGLLCLS 135
Query: 494 PARENIYQTSKSRYYICNPITGDYLMLPKSPKNHIRPIASGFGFDSLNNVYKVLRIL--- 664
+++Y S YI NP TG Y LPKS + + + SGFGF+ YKV+RI+
Sbjct: 136 ---DSLYNDS---LYIYNPFTGCYKELPKSLQYPDQEVVSGFGFNPKTKEYKVIRIVYYR 189
Query: 665 ---------SDXXXXXXXXXXYTFGSDCWRVVALNVPYISDMNLSNVHVNNCLYWVA--C 811
T G WR + V Y S VN L+W++ C
Sbjct: 190 NGHGGYPRSRRIIYPLSEVQILTLGCPEWRSLG-KVSYRLVRRASGALVNGRLHWISRPC 248
Query: 812 TSIEIAIIVSFNMATEEFSTIQLPNIGKMSRTG-TLIVLRKQLCLIIDGLFDIETEMWEM 988
+ +VSF++ E+F + P+ G ++R L+VLR L + + E+W M
Sbjct: 249 RNKPARRLVSFDLTDEQFREVSKPDCGGLNRCNYHLVVLRGCLSAAVYCNYG-RLEIWVM 307
Query: 989 KFYRILGSLAEEYVIQA 1039
K Y + S +EY I A
Sbjct: 308 KEYNVKESWVKEYNIGA 324
>ref|XP_002301588.1| f-box family protein [Populus trichocarpa]
gi|222843314|gb|EEE80861.1| f-box family protein [Populus
trichocarpa]
Length = 408
Score = 102 bits (254), Expect = 3e-19
Identities = 88/309 (28%), Positives = 139/309 (44%), Gaps = 17/309 (5%)
Frame = +2
Query: 164 LPLDVVFDIFARLPLKTISQCRWVCKRWYDVVLHPRFAQVHFASNRLQCFAFRDRYRKFY 343
LP ++ DI +RLP+ ++ + + VC+ W + L P ++ + + + + F
Sbjct: 28 LPREIAQDILSRLPITSLVKFKCVCRAWRAMALDPEVVNLYLSCSTQETDPCVILHCDFP 87
Query: 344 MIDNECFDHFETQVRAYNLEFNEFKENFKAP--RFVKQYEVVGSVNGLICFAPARENIYQ 517
+ +N F F A + E E + +AP + ++EVVGS NGL+C + + N
Sbjct: 88 IRNNLYFVDF-----AAHEEEKEKVKRIRAPFSSMMPEFEVVGSCNGLLCLSDSLFN--- 139
Query: 518 TSKSRYYICNPITGDYLMLPKSPKNHIRPIASGFGFDSLNNVYKVLRIL----------- 664
YI NP TG Y LPKS + + + GFGF+ N YKV+RI+
Sbjct: 140 ---DSLYIYNPFTGRYKELPKSLQYPDQEVVFGFGFNPKTNEYKVIRIVYYRNGHGRYPR 196
Query: 665 -SDXXXXXXXXXXYTFGSDCWRVVALNVPYISDMNLSNVHVNNCLYWVA--CTSIEIAII 835
T G WR + V Y S VN L+WV+ C + +
Sbjct: 197 SRRIIYPLSQVQILTLGCPGWRSLG-KVSYRLVRRASETLVNGRLHWVSRPCRNKPARRL 255
Query: 836 VSFNMATEEFSTIQLPNIGKMSRTG-TLIVLRKQLCLIIDGLFDIETEMWEMKFYRILGS 1012
VSF++ E+F + P+ G ++R L VLR L + + + E+W MK Y + S
Sbjct: 256 VSFDLTDEQFREVPKPDCGGLNRCDYHLAVLRGCLSVAVYCNYG-RLEIWVMKEYNVKES 314
Query: 1013 LAEEYVIQA 1039
+EY I A
Sbjct: 315 WVKEYNIGA 323
>ref|XP_002279122.1| PREDICTED: F-box protein At3g07870 [Vitis vinifera]
gi|147785390|emb|CAN68678.1| hypothetical protein
VITISV_041941 [Vitis vinifera]
Length = 409
Score = 98.6 bits (244), Expect = 4e-18
Identities = 87/314 (27%), Positives = 134/314 (42%), Gaps = 19/314 (6%)
Frame = +2
Query: 155 VSKLPLDVVFDIFARLPLKTISQCRWVCKRWYDVVLHPRFAQVHFASNRLQ--CFAFRDR 328
+ +LP D++ DI +RLP+ ++ Q R+VC+ W + A H C
Sbjct: 27 MERLPRDIILDILSRLPVTSLVQFRFVCRGWRLMAQDSLLASKHLCRTAQYNPCLILHCD 86
Query: 329 Y---RKFYMIDNECFDHFETQVRAYNLEFNEFKENFKAPRFVKQYEVVGSVNGLICFAPA 499
Y + +D + VR + F + ++EVVGS NGL+C A +
Sbjct: 87 YPIRNQISFVDISAESRDKDMVRKLTIPFWAS---------MPEFEVVGSCNGLLCLADS 137
Query: 500 RENIYQTSKSRYYICNPITGDYLMLPKSPKNHIRPIASGFGFDSLNNVYKVLRIL----- 664
K Y+ NP T D+ LPKS + + + GFG+ + VYKV++++
Sbjct: 138 ------LFKDAVYVHNPFTRDFKQLPKSLQYPDQEVVFGFGYHPMTEVYKVVKVVYYRNG 191
Query: 665 -------SDXXXXXXXXXXYTFGSDCWRVVALNVPYISDMNLSNVHVNNCLYWVACTSIE 823
T GS WR + V Y D S VN L+WV
Sbjct: 192 YGGFSRFRRITCSQSEVQVLTLGSPTWRSLG-KVSYQLDRWPSEALVNGRLHWVTRPRRY 250
Query: 824 IA-IIVSFNMATEEFSTIQLPNIGKMSRTG-TLIVLRKQLCLIIDGLFDIETEMWEMKFY 997
+ IVSF++A E+F I P+ G +SR L+VL L + + + E+W MK Y
Sbjct: 251 VTRFIVSFDLADEQFREIPKPDCGGLSRCNYHLLVLGGCLSAAVH-RSNGKLEVWVMKEY 309
Query: 998 RILGSLAEEYVIQA 1039
+ S +E+ I A
Sbjct: 310 DVKESWIKEFNIGA 323