BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009176
         (492 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containi...   111   5e-23
emb|CAN69066.1| hypothetical protein VITISV_016070 [Vitis vinifera]   111   5e-23
ref|XP_002519945.1| pentatricopeptide repeat-containing protein,...   108   6e-22
gb|AFK33630.1| unknown [Lotus japonicus]                              103   1e-20
ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containi...   102   3e-20

>ref|XP_003631528.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Vitis vinifera]
          Length = 414

 Score =  111 bits (278), Expect = 5e-23
 Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
 Frame = +3

Query: 6   KKQNNYSIHDTEAASAADILRLMDVLKLSIPHDVYAYLIKECTHIRDAETGVQVHTHMTK 185
           KK++N +   T  ++  DILRLMD L L IP D+YA LIKE +   DA    Q+  H+ +
Sbjct: 47  KKKSNSNATPT-TSTPTDILRLMDGLGLPIPPDIYASLIKESSTTGDATQATQLLAHINR 105

Query: 186 SGHGMTLLLANRLLFMYVSCGSLDSARELFDKMIV--KDSISWAIMIASCVENEYLEALT 359
           SG  ++  L NR+L MYVSCG + +AR +FDKM V  K+SISWAIM+A+ ++N + E   
Sbjct: 106 SGLPLSSALLNRILLMYVSCGLIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEE-A 164

Query: 360 LFRYKQMGYQCYESSKESMWGLVVDYILRACVGVGDYEVGKQVH 491
           +F + QM  + + +    +   +   +L+ACV   +  +GKQVH
Sbjct: 165 IFLFVQM-MELHSTIMLELPAWIFICVLKACVHTMNLTLGKQVH 207


>emb|CAN69066.1| hypothetical protein VITISV_016070 [Vitis vinifera]
          Length = 543

 Score =  111 bits (278), Expect = 5e-23
 Identities = 68/164 (41%), Positives = 101/164 (61%), Gaps = 2/164 (1%)
 Frame = +3

Query: 6   KKQNNYSIHDTEAASAADILRLMDVLKLSIPHDVYAYLIKECTHIRDAETGVQVHTHMTK 185
           KK++N +   T  ++  DILRLMD L L IP D+YA LIKE +   DA    Q+  H+ +
Sbjct: 210 KKKSNSNATPT-TSTPTDILRLMDGLGLPIPPDIYASLIKESSTTGDATQATQLLAHINR 268

Query: 186 SGHGMTLLLANRLLFMYVSCGSLDSARELFDKMIV--KDSISWAIMIASCVENEYLEALT 359
           SG  ++  L NR+L MYVSCG + +AR +FDKM V  K+SISWAIM+A+ ++N + E   
Sbjct: 269 SGLPLSSALLNRILLMYVSCGLIHTARHMFDKMNVLNKNSISWAIMLAAYMDNGFYEE-A 327

Query: 360 LFRYKQMGYQCYESSKESMWGLVVDYILRACVGVGDYEVGKQVH 491
           +F + QM  + + +    +   +   +L+ACV   +  +GKQVH
Sbjct: 328 IFLFVQM-MELHSTIMLELPAWIFICVLKACVHTMNLTLGKQVH 370


>ref|XP_002519945.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223540991|gb|EEF42549.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 403

 Score =  108 bits (269), Expect = 6e-22
 Identities = 62/156 (39%), Positives = 94/156 (60%), Gaps = 5/156 (3%)
 Frame = +3

Query: 39  EAASAADILRLMDVLKLSIPHDVYAYLIKECTHIRDAETGVQVHTHM-TKSGHGMTLLLA 215
           ++ S++DI+RLMD L   IP D+Y  LIKECT   D+   + +H+H+ +++   +T  L 
Sbjct: 53  KSCSSSDIMRLMDSLCHPIPPDIYTSLIKECTLTSDSTEALCLHSHLISQTNLKLTPPLV 112

Query: 216 NRLLFMYVSCGSLDSARELFDKM-IVKDSISWAIMIASCVENEYLEA-LTLFRYKQMGYQ 389
           +RLL M+VSCG LD AR LFDKM + KD ISW I+I  C  N   EA + LF    + + 
Sbjct: 113 HRLLLMHVSCGQLDIARNLFDKMPLKKDFISWVIVIVGCFSNSKYEAGINLFIDMLLQHS 172

Query: 390 CYESSKESM--WGLVVDYILRACVGVGDYEVGKQVH 491
            Y+     +  W +++  I++ C+   +  +GKQVH
Sbjct: 173 VYDGLMFDLNTWNIIILCIIKCCIYSMNISLGKQVH 208


>gb|AFK33630.1| unknown [Lotus japonicus]
          Length = 356

 Score =  103 bits (257), Expect = 1e-20
 Identities = 63/154 (40%), Positives = 88/154 (57%), Gaps = 3/154 (1%)
 Frame = +3

Query: 39  EAASAADILRLMDVLKLSIPHDVYAYLIKECTHIRDAETGVQVHTHMTKSGHGMTLLLAN 218
           + A+ + IL LMDVL   IP D+Y  LIKECT   D +T +++HTH+  SG    L   N
Sbjct: 10  KGATTSHILHLMDVLPFPIPIDIYTSLIKECTLSPDPQTAIELHTHIAHSGIKPPLSFIN 69

Query: 219 RLLFMYVSCGSLDSARELFDKMIVKDSISWAIMIASCVEN-EYLEALTLF--RYKQMGYQ 389
           R+L M+VSCG LD A +LFD M VKD  SWA +  +  +N +Y EA+ +F     Q+G  
Sbjct: 70  RILVMFVSCGLLDYACQLFDAMPVKDFNSWATLFIAYYDNADYEEAIDVFLAMLHQLG-- 127

Query: 390 CYESSKESMWGLVVDYILRACVGVGDYEVGKQVH 491
               S+   W  +    L+AC  + +  +G QVH
Sbjct: 128 ---MSEFPPW--ICACFLKACACIENIPLGMQVH 156


>ref|XP_003516509.1| PREDICTED: pentatricopeptide repeat-containing protein
           At1g31790-like [Glycine max]
          Length = 423

 Score =  102 bits (254), Expect = 3e-20
 Identities = 60/154 (38%), Positives = 89/154 (57%), Gaps = 3/154 (1%)
 Frame = +3

Query: 39  EAASAADILRLMDVLKLSIPHDVYAYLIKECTHIRDAETGVQVHTHMTKSGHGMTLLLAN 218
           + A+ +DIL LM+ L   +P D+Y  LIKECT   D ET +++ TH++KSG    L   N
Sbjct: 77  KGATTSDILHLMEALPFPVPIDIYTSLIKECTVSGDPETAIELATHISKSGIKPPLPFLN 136

Query: 219 RLLFMYVSCGSLDSARELFDKMIVKDSISWAIMIASCVEN-EYLEALTLF--RYKQMGYQ 389
           R+L M+VSCG L++AR +FDKM V+D  +WA +  +  +N +Y EA  +F     Q+G  
Sbjct: 137 RILVMFVSCGLLENARHMFDKMRVRDFNTWATLFVAYYDNTDYEEATNVFVNMLTQLGMM 196

Query: 390 CYESSKESMWGLVVDYILRACVGVGDYEVGKQVH 491
            +      +W      +LRAC    +  +G QVH
Sbjct: 197 EF---PPWIWAC----LLRACACTVNVPLGMQVH 223