BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009172
         (678 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I sub...   238   8e-61
ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymer...   236   4e-60
ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I sub...   228   6e-58
ref|XP_003550091.1| PREDICTED: DNA-directed RNA polymerase I sub...   227   2e-57
emb|CAN62043.1| hypothetical protein VITISV_038847 [Vitis vinifera]   225   7e-57

>ref|XP_004146776.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Cucumis
           sativus]
          Length = 1173

 Score =  238 bits (607), Expect = 8e-61
 Identities = 112/192 (58%), Positives = 147/192 (76%), Gaps = 2/192 (1%)
 Frame = -2

Query: 572 ENLEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQKGH- 396
           E L EL + H++SFDH +D G+ET++ +IKPV+I D FTN  L I  G  EL  PQK   
Sbjct: 12  EALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERN 71

Query: 395 -AAIGQRLLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCHLRG 219
              I + LLP+ECRQ K SY+GKF+ +VCF Y+ +  ++EKF FGQ PIMLKSKLCHLRG
Sbjct: 72  LRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKFNFGQFPIMLKSKLCHLRG 131

Query: 218 ANAERLVAYREEPTEMGGYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTNKAV 39
            + ++LV+Y EE +EMGGYF++NGLER++R LI PKRNYP ++ R+SF +R++GYT+KAV
Sbjct: 132 LDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAV 191

Query: 38  IIRCVRNDQSSV 3
           +IRCVR DQSSV
Sbjct: 192 VIRCVREDQSSV 203


>ref|XP_004163996.1| PREDICTED: probable DNA-directed RNA polymerase I subunit
           RPA2-like, partial [Cucumis sativus]
          Length = 948

 Score =  236 bits (601), Expect = 4e-60
 Identities = 111/192 (57%), Positives = 146/192 (76%), Gaps = 2/192 (1%)
 Frame = -2

Query: 572 ENLEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQKGH- 396
           E L EL + H++SFDH +D G+ET++ +IKPV+I D FTN  L I  G  EL  PQK   
Sbjct: 12  EALRELFRHHIESFDHLVDAGLETLMNSIKPVEIYDSFTNKKLRIWLGKPELYPPQKERN 71

Query: 395 -AAIGQRLLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCHLRG 219
              I + LLP+ECRQ K SY+GKF+ +VCF Y+ +  ++EK  FGQ PIMLKSKLCHLRG
Sbjct: 72  LRTIREALLPYECRQAKISYTGKFMADVCFQYDEKAVIREKLNFGQFPIMLKSKLCHLRG 131

Query: 218 ANAERLVAYREEPTEMGGYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTNKAV 39
            + ++LV+Y EE +EMGGYF++NGLER++R LI PKRNYP ++ R+SF +R++GYT+KAV
Sbjct: 132 LDPKKLVSYNEEASEMGGYFVMNGLERVVRLLIAPKRNYPTSMVRNSFSDRREGYTDKAV 191

Query: 38  IIRCVRNDQSSV 3
           +IRCVR DQSSV
Sbjct: 192 VIRCVREDQSSV 203


>ref|XP_003542805.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
           max]
          Length = 1175

 Score =  228 bits (582), Expect = 6e-58
 Identities = 111/195 (56%), Positives = 148/195 (75%), Gaps = 2/195 (1%)
 Frame = -2

Query: 581 PNCENLEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQK 402
           P+ E L EL K H++SFD+ +D G++TML +IKPV++ D FT+T L I      L  PQK
Sbjct: 9   PDFEALRELFKHHIESFDYMVDAGLDTMLGHIKPVEVFDDFTSTKLRIWLDNPVLYPPQK 68

Query: 401 GHAAIGQR--LLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCH 228
              +   R  LLPFECRQ K SYSGK  ++VCF YN    ++E   FGQ PIML+SKLC+
Sbjct: 69  ERISRTMREALLPFECRQAKISYSGKITIDVCFQYNDGPIIRENVNFGQFPIMLQSKLCN 128

Query: 227 LRGANAERLVAYREEPTEMGGYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTN 48
           LRGA+ ++LV+Y+EE +EMGGYFI+NGLER++R LI+PKRNYPM++ R+SF +R++GYT+
Sbjct: 129 LRGADPQKLVSYKEEASEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFSDRREGYTD 188

Query: 47  KAVIIRCVRNDQSSV 3
           KAV+IRCVR DQSS+
Sbjct: 189 KAVVIRCVRADQSSL 203


>ref|XP_003550091.1| PREDICTED: DNA-directed RNA polymerase I subunit RPA2-like [Glycine
           max]
          Length = 1175

 Score =  227 bits (578), Expect = 2e-57
 Identities = 110/195 (56%), Positives = 147/195 (75%), Gaps = 2/195 (1%)
 Frame = -2

Query: 581 PNCENLEELLKPHVQSFDHFIDIGIETMLENIKPVKITDKFTNTTLEIKFGAHELSAPQK 402
           P+ E L EL K H++SFD+  D G+ETML +IKP+++ D FT+T L I      L  PQK
Sbjct: 9   PDFEALRELFKHHIESFDYMADAGLETMLRHIKPIEVFDDFTSTKLRIWLDNPVLYPPQK 68

Query: 401 GHAAIGQR--LLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLKSKLCH 228
              +   R  LLPFECRQ K SY+GK  ++VCF YN    ++E   FGQ PIML+SKLC+
Sbjct: 69  ERISRTMREALLPFECRQAKISYAGKITIDVCFQYNDGPIIRENINFGQFPIMLQSKLCN 128

Query: 227 LRGANAERLVAYREEPTEMGGYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQDGYTN 48
           LRGA+ ++LV+YREE +EMGGYFI+NGLER+IR LI+PKRN+PM++ R+SF +R++GYT+
Sbjct: 129 LRGADPQKLVSYREEASEMGGYFILNGLERVIRLLILPKRNHPMSMVRNSFSDRREGYTD 188

Query: 47  KAVIIRCVRNDQSSV 3
           KA++IRCVR DQSS+
Sbjct: 189 KAIVIRCVRADQSSL 203


>emb|CAN62043.1| hypothetical protein VITISV_038847 [Vitis vinifera]
          Length = 416

 Score =  225 bits (573), Expect = 7e-57
 Identities = 112/200 (56%), Positives = 149/200 (74%), Gaps = 7/200 (3%)
 Frame = -2

Query: 581 PNCENLEELLKPHVQSFDHFIDIGIETMLENIKPVK---ITDK--FTNTTLEIKFGAHEL 417
           P+ E L EL + H+ SFDH ++ G+ET+L ++KPV+   IT    F  T + + FG  EL
Sbjct: 6   PDYEPLRELFQHHIDSFDHLVEFGLETLLMSVKPVESLFITHNGVFFLTRIALWFGQPEL 65

Query: 416 SAPQKGHAAIGQR--LLPFECRQEKGSYSGKFIVEVCFSYNGRVPLKEKFKFGQLPIMLK 243
             PQK  +A   R  L PFECRQ K SYSGK + +VCF Y   V ++EKF  GQ P+MLK
Sbjct: 66  YPPQKERSARTMRDALYPFECRQAKISYSGKLLADVCFQYGNGVVIREKFNLGQFPMMLK 125

Query: 242 SKLCHLRGANAERLVAYREEPTEMGGYFIVNGLERLIRFLIMPKRNYPMNVERDSFRERQ 63
           SKLCHLRGA+ ++LV+ +EE +EMGGYFI+NGLER++R LI+PKRNYPM++ R+SFR+R+
Sbjct: 126 SKLCHLRGADPQKLVSCKEESSEMGGYFILNGLERVVRLLILPKRNYPMSMVRNSFRDRR 185

Query: 62  DGYTNKAVIIRCVRNDQSSV 3
           +GYT+KAV+IRCVR DQS+V
Sbjct: 186 EGYTDKAVVIRCVREDQSAV 205