BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009105
         (529 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus ...    70   3e-10
ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millet...    70   3e-10
ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica ...    69   6e-10
ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|375911...    68   7e-10
sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitoc...    68   7e-10

>ref|YP_005090486.1| ribosomal protein S4 (mitochondrion) [Lotus japonicus]
           gi|357197350|gb|AET62946.1| ribosomal protein S4
           (mitochondrion) [Lotus japonicus]
          Length = 358

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +2

Query: 5   KRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKVLQEM 133
           KRRIK+IELPTHYLE NYRT+KAVVFY PNI HIP    L+++
Sbjct: 302 KRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDL 344


>ref|YP_005090450.1| ribosomal protein S4 (mitochondrion) [Millettia pinnata]
           gi|372450274|ref|YP_005090457.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197313|gb|AET62910.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
           gi|357197320|gb|AET62917.1| ribosomal protein S4
           (mitochondrion) [Millettia pinnata]
          Length = 358

 Score = 69.7 bits (169), Expect = 3e-10
 Identities = 31/43 (72%), Positives = 36/43 (83%)
 Frame = +2

Query: 5   KRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKVLQEM 133
           KRRIK+IELPTHYLE NYRT+KAVVFY PNI HIP    L+++
Sbjct: 302 KRRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDL 344


>ref|YP_002000578.1| ribosomal protein S4 [Oryza sativa Japonica Group]
           gi|92700092|dbj|BAC19883.2| Ribosomal protein S4 [Oryza
           sativa Japonica Group]
          Length = 352

 Score = 68.6 bits (166), Expect = 6e-10
 Identities = 31/44 (70%), Positives = 36/44 (81%)
 Frame = +2

Query: 2   RKRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKVLQEM 133
           RK RIK+IELPTHYLE NYRT+KAVVFY PNI HIP    L+++
Sbjct: 295 RKIRIKRIELPTHYLEVNYRTLKAVVFYGPNIGHIPHDIRLKDL 338


>ref|YP_717175.1| ribosomal protein S4 [Brassica napus] gi|37591124|dbj|BAC98926.1|
           ribosomal protein S4 [Brassica napus]
          Length = 362

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +2

Query: 5   KRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKVLQEM 133
           KRRIK+IELPTHYLE NYRT KAVVFY PNI HIP    L+++
Sbjct: 306 KRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDL 348


>sp|Q31708.2|RT04_ARATH RecName: Full=Ribosomal protein S4, mitochondrial
          Length = 362

 Score = 68.2 bits (165), Expect = 7e-10
 Identities = 31/43 (72%), Positives = 35/43 (81%)
 Frame = +2

Query: 5   KRRIKKIELPTHYLEANYRTMKAVVFYAPNIAHIPQSKVLQEM 133
           KRRIK+IELPTHYLE NYRT KAVVFY PNI HIP    L+++
Sbjct: 306 KRRIKRIELPTHYLEVNYRTPKAVVFYGPNIGHIPHDIRLKDL 348