BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009060
         (821 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

sp|P23326.1|RK35_SPIOL RecName: Full=50S ribosomal protein L35, ...   155   1e-35
ref|XP_002267813.1| PREDICTED: 50S ribosomal protein L35, chloro...   155   1e-35
ref|NP_850047.1| Ribosomal protein L35 [Arabidopsis thaliana] gi...   154   2e-35
emb|CAA60774.1| ribosomal protein L35 [Arabidopsis thaliana]          154   2e-35
ref|XP_002264584.1| PREDICTED: 50S ribosomal protein L35, chloro...   153   4e-35

>sp|P23326.1|RK35_SPIOL RecName: Full=50S ribosomal protein L35, chloroplastic; AltName:
           Full=CL35; Flags: Precursor gi|189096153|pdb|3BBO|5
           Chain 5, Homology Model For The Spinach Chloroplast 50s
           Subunit Fitted To 9.4a Cryo-Em Map Of The 70s
           Chlororibosome gi|170139|gb|AAA34043.1| ribosomal
           protein L35 [Spinacia oleracea]
          Length = 159

 Score =  155 bits (392), Expect = 1e-35
 Identities = 82/123 (66%), Positives = 95/123 (77%), Gaps = 7/123 (5%)
 Frame = -2

Query: 718 HFSLSHNKTLSLNLSSSQTISGFHPVL-------PIKLSPPQNTPSFTVFAAKGYKMKTH 560
           HF+     TL+L+ SSS + S   P++        +  S   ++PSFTVFAAKGYKMKTH
Sbjct: 36  HFNKQLKSTLNLSSSSSISSSKVQPIVLKNKRISTVDSSVSTSSPSFTVFAAKGYKMKTH 95

Query: 559 KASAKRFRVTGNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKV 380
           KASAKRFRVTG GKIVRRRA KQHLLAKKN KR+NRLSK++QV +SDYDNVIGALPYLKV
Sbjct: 96  KASAKRFRVTGKGKIVRRRAGKQHLLAKKNTKRKNRLSKLIQVDRSDYDNVIGALPYLKV 155

Query: 379 NRK 371
           NRK
Sbjct: 156 NRK 158


>ref|XP_002267813.1| PREDICTED: 50S ribosomal protein L35, chloroplastic [Vitis
           vinifera] gi|147785813|emb|CAN77631.1| hypothetical
           protein VITISV_001803 [Vitis vinifera]
           gi|147799145|emb|CAN63703.1| hypothetical protein
           VITISV_039205 [Vitis vinifera]
          Length = 153

 Score =  155 bits (391), Expect = 1e-35
 Identities = 83/116 (71%), Positives = 92/116 (79%), Gaps = 5/116 (4%)
 Frame = -2

Query: 700 NKTLSLNLSSSQTISGFHPVLPIKLSP-----PQNTPSFTVFAAKGYKMKTHKASAKRFR 536
           ++  SL LSSS+ ISGF P+LP++ S      P    S TV +AKGYKMKTHKASAKRFR
Sbjct: 37  SRACSLKLSSSRNISGFAPILPLRHSTLNSPSPSQPSSLTVVSAKGYKMKTHKASAKRFR 96

Query: 535 VTGNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKVNRKA 368
           VTG GKIVRRRA KQHLLAKKNAKRR RLSKM  V +SDYDNVIGALPYLKVNR+A
Sbjct: 97  VTGRGKIVRRRAGKQHLLAKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNREA 152


>ref|NP_850047.1| Ribosomal protein L35 [Arabidopsis thaliana]
           gi|17529002|gb|AAL38711.1| putative chloroplast
           ribosomal protein L35 [Arabidopsis thaliana]
           gi|20465445|gb|AAM20182.1| putative chloroplast
           ribosomal protein L35 [Arabidopsis thaliana]
           gi|330252434|gb|AEC07528.1| Ribosomal protein L35
           [Arabidopsis thaliana]
          Length = 145

 Score =  154 bits (389), Expect = 2e-35
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 5/126 (3%)
 Frame = -2

Query: 730 SRSFHFSLSHNKTLSLNLSSSQTISGFHPVLPIKLSP-----PQNTPSFTVFAAKGYKMK 566
           S S   SL  +   + +LSSS +ISG   VLP+K+S       Q   SFTVFA KGYKMK
Sbjct: 19  SSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKISTVASPNSQKLHSFTVFAHKGYKMK 78

Query: 565 THKASAKRFRVTGNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYL 386
           THKASAKRFRVTG GKIVRRR+ KQHLLAKKN KR+ RLSKM +V++SDYDNVIGALPYL
Sbjct: 79  THKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGALPYL 138

Query: 385 KVNRKA 368
           KVNRKA
Sbjct: 139 KVNRKA 144


>emb|CAA60774.1| ribosomal protein L35 [Arabidopsis thaliana]
          Length = 140

 Score =  154 bits (389), Expect = 2e-35
 Identities = 85/126 (67%), Positives = 96/126 (76%), Gaps = 5/126 (3%)
 Frame = -2

Query: 730 SRSFHFSLSHNKTLSLNLSSSQTISGFHPVLPIKLSP-----PQNTPSFTVFAAKGYKMK 566
           S S   SL  +   + +LSSS +ISG   VLP+K+S       Q   SFTVFA KGYKMK
Sbjct: 14  SSSPKVSLRSSVHFATSLSSSHSISGLRAVLPLKISTVASPNSQKLHSFTVFAHKGYKMK 73

Query: 565 THKASAKRFRVTGNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYL 386
           THKASAKRFRVTG GKIVRRR+ KQHLLAKKN KR+ RLSKM +V++SDYDNVIGALPYL
Sbjct: 74  THKASAKRFRVTGRGKIVRRRSGKQHLLAKKNNKRKLRLSKMTEVNRSDYDNVIGALPYL 133

Query: 385 KVNRKA 368
           KVNRKA
Sbjct: 134 KVNRKA 139


>ref|XP_002264584.1| PREDICTED: 50S ribosomal protein L35, chloroplastic [Vitis
           vinifera]
          Length = 153

 Score =  153 bits (387), Expect = 4e-35
 Identities = 82/115 (71%), Positives = 91/115 (79%), Gaps = 5/115 (4%)
 Frame = -2

Query: 700 NKTLSLNLSSSQTISGFHPVLPIKLSP-----PQNTPSFTVFAAKGYKMKTHKASAKRFR 536
           ++  SL LSSS+ ISGF P+LP++ S      P    S TV +AKGYKMKTHKASAKRFR
Sbjct: 37  SRACSLKLSSSRNISGFAPILPLRHSTLNSPSPSQPSSLTVVSAKGYKMKTHKASAKRFR 96

Query: 535 VTGNGKIVRRRARKQHLLAKKNAKRRNRLSKMVQVHKSDYDNVIGALPYLKVNRK 371
           VTG GKIVRRRA KQHLLAKKNAKRR RLSKM  V +SDYDNVIGALPYLKVNR+
Sbjct: 97  VTGRGKIVRRRAGKQHLLAKKNAKRRLRLSKMHPVSRSDYDNVIGALPYLKVNRE 151