BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00009016
         (519 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containi...   224   7e-57
ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containi...   205   3e-51
ref|XP_002528356.1| pentatricopeptide repeat-containing protein,...   202   2e-50
ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containi...   183   1e-44
ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containi...   176   1e-42

>ref|XP_002283262.2| PREDICTED: pentatricopeptide repeat-containing protein At4g33170
           [Vitis vinifera]
          Length = 590

 Score =  224 bits (570), Expect = 7e-57
 Identities = 116/171 (67%), Positives = 137/171 (80%), Gaps = 1/171 (0%)
 Frame = +2

Query: 8   DLSLINNLITSYSKSNLLSDALRLFRQ-IPSPNVVTWTALISSYTNTVFSFHHFISMLRY 184
           D S  N+LIT YSKSNLLS A+R+F   IPSPNVV+WTALIS+Y +T F+  HFISMLR+
Sbjct: 46  DRSFYNSLITLYSKSNLLSKAVRIFHHHIPSPNVVSWTALISAYASTSFALLHFISMLRH 105

Query: 185 PKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGSALVHFYSKCRLPNDA 364
           P LPN+RT ASL KTCASL SL FGLQLHS SLKL LS  PF  SALV+FYSKCRLP +A
Sbjct: 106 PTLPNQRTLASLLKTCASLPSLSFGLQLHSLSLKLSLSAQPFVSSALVNFYSKCRLPLEA 165

Query: 365 VKAFHEIPDRDEVSFSAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVS 517
            + F EI +RDEV F+A+IVGLAQN++P+ AL +F +M + NVGSTMYSVS
Sbjct: 166 CRVFDEITERDEVCFAAMIVGLAQNARPVDALLVFGEMKACNVGSTMYSVS 216


>ref|XP_004134398.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
           gi|449487598|ref|XP_004157706.1| PREDICTED:
           pentatricopeptide repeat-containing protein
           At4g33170-like [Cucumis sativus]
          Length = 583

 Score =  205 bits (522), Expect = 3e-51
 Identities = 103/165 (62%), Positives = 126/165 (76%)
 Frame = +2

Query: 23  NNLITSYSKSNLLSDALRLFRQIPSPNVVTWTALISSYTNTVFSFHHFISMLRYPKLPNE 202
           NNLIT YSK+NLL  + RLF QIP P++V+WTALIS++++T  S  HF+SMLRYP  PNE
Sbjct: 48  NNLITRYSKANLLHYSARLFNQIPFPDIVSWTALISAHSSTFLSLRHFVSMLRYPTFPNE 107

Query: 203 RTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGSALVHFYSKCRLPNDAVKAFHE 382
           RT A LFKTCASL  + FG  LHS + KL L + P++GSALV+FYSKCRL NDA K F E
Sbjct: 108 RTLAPLFKTCASLPCVSFGFALHSLAYKLSLCNGPYSGSALVNFYSKCRLFNDACKVFDE 167

Query: 383 IPDRDEVSFSAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVS 517
           I  RDE  +SA++VGLAQN+Q I ALS+F  M +S V ST+YSVS
Sbjct: 168 ISYRDEFCYSALVVGLAQNAQSIRALSMFRQMKASEVASTIYSVS 212


>ref|XP_002528356.1| pentatricopeptide repeat-containing protein, putative [Ricinus
           communis] gi|223532224|gb|EEF34028.1| pentatricopeptide
           repeat-containing protein, putative [Ricinus communis]
          Length = 356

 Score =  202 bits (514), Expect = 2e-50
 Identities = 104/173 (60%), Positives = 132/173 (76%), Gaps = 3/173 (1%)
 Frame = +2

Query: 8   DLSLINNLITSYSKSN---LLSDALRLFRQIPSPNVVTWTALISSYTNTVFSFHHFISML 178
           +LS  N+LIT YS+S    + S A RLF  +PSPN+V+WT+LIS++T++  S HHF+SML
Sbjct: 25  NLSCFNHLITLYSRSPNFLVFSYANRLFSLLPSPNIVSWTSLISAHTHSFLSLHHFLSML 84

Query: 179 RYPKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGSALVHFYSKCRLPN 358
           R P LPN+RT ASLFK C +LS+L FG  LHS +LKL L   PF+GSALV+FYSKCRLP 
Sbjct: 85  RRPILPNQRTLASLFKACTNLSALSFGFSLHSMALKLSLDTQPFSGSALVNFYSKCRLPE 144

Query: 359 DAVKAFHEIPDRDEVSFSAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVS 517
           +A K F E+P+RDEV + A+IVGLAQNS+ I ALS+F +M   NV ST+YSVS
Sbjct: 145 NARKVFDEMPERDEVCYGALIVGLAQNSRAIDALSVFNEMKFCNVSSTVYSVS 197


>ref|XP_003524140.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  183 bits (465), Expect = 1e-44
 Identities = 93/171 (54%), Positives = 126/171 (73%), Gaps = 1/171 (0%)
 Frame = +2

Query: 8   DLSLINNLITSYSKSNLLSDALRLFRQIP-SPNVVTWTALISSYTNTVFSFHHFISMLRY 184
           D ++ NNLIT YSKSNL S A+ LF ++P  PNVV+WTALIS+++NT+ S  HF++MLR+
Sbjct: 33  DRAVWNNLITHYSKSNLSSYAVSLFHRLPFPPNVVSWTALISAHSNTLLSLRHFLAMLRH 92

Query: 185 PKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGSALVHFYSKCRLPNDA 364
             LPN RT ASLF TCA+L+++ F L LHS +LKL L+H PF  S+L+  Y+K R+P++A
Sbjct: 93  NTLPNHRTLASLFATCAALTAVSFALSLHSLALKLALAHHPFPASSLLSVYAKLRMPHNA 152

Query: 365 VKAFHEIPDRDEVSFSAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVS 517
            K F EIP  D V FSA++V LAQNS+ + ALS+F+DM      ST++ VS
Sbjct: 153 RKVFDEIPQPDNVCFSALVVALAQNSRSVDALSVFSDMRCRGFASTVHGVS 203


>ref|XP_003532686.1| PREDICTED: pentatricopeptide repeat-containing protein
           At4g33170-like [Glycine max]
          Length = 561

 Score =  176 bits (447), Expect = 1e-42
 Identities = 92/171 (53%), Positives = 125/171 (73%), Gaps = 1/171 (0%)
 Frame = +2

Query: 8   DLSLINNLITSYSKSNLLSDALRLFRQIP-SPNVVTWTALISSYTNTVFSFHHFISMLRY 184
           D ++ NNLIT YSKS+L S A+ LF+++P  PNVV+WTALIS+++NT+ S  HF++MLR+
Sbjct: 33  DRAVWNNLITHYSKSDLSSYAVSLFQRLPFPPNVVSWTALISAHSNTLLSLRHFLAMLRH 92

Query: 185 PKLPNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGSALVHFYSKCRLPNDA 364
             LPN RT ASLF TCA+L+++ F L LHS +LKL LS  PF  S+L+  Y+K R+P +A
Sbjct: 93  NTLPNHRTVASLFTTCAALTAVSFALSLHSLALKLSLSQHPFPASSLLSLYAKLRMPLNA 152

Query: 365 VKAFHEIPDRDEVSFSAIIVGLAQNSQPIHALSLFADMVSSNVGSTMYSVS 517
            K F EIP  D V FSA+IV LAQNS+ + A S+F++M      ST++SVS
Sbjct: 153 RKVFDEIPQPDNVCFSALIVALAQNSRSVDASSVFSEMRGRGFASTVHSVS 203



 Score = 55.1 bits (131), Expect = 6e-06
 Identities = 41/156 (26%), Positives = 78/156 (50%), Gaps = 4/156 (2%)
 Frame = +2

Query: 23  NNLITSYSKSNLLSDALRLFRQIPSPNVVTWTALI---SSYTNTVFSFHHFISMLRYPKL 193
           ++L++ Y+K  +  +A ++F +IP P+ V ++ALI   +  + +V +   F  M      
Sbjct: 137 SSLLSLYAKLRMPLNARKVFDEIPQPDNVCFSALIVALAQNSRSVDASSVFSEMRGRGFA 196

Query: 194 PNERTFASLFKTCASLSSLPFGLQLHSFSLKLCLSHLPFTGSALVHFYSKCRLPNDAVKA 373
               + + + +  A L++L     +H+ ++ L L      GSALV  Y K  + NDA + 
Sbjct: 197 STVHSVSGVLRAAAQLAALEQCRMMHAHAVVLGLDSNVVVGSALVDGYGKAGVVNDARRV 256

Query: 374 FHE-IPDRDEVSFSAIIVGLAQNSQPIHALSLFADM 478
           F + + D + V ++A++ G AQ      A  LF  +
Sbjct: 257 FEDNLDDMNVVGWNAMMAGYAQQGDYQSAFELFESL 292