BLASTX nr result
ID: Coptis25_contig00008384
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00008384
(1351 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulga... 75 2e-22
emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulga... 67 1e-20
ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative rib... 70 9e-20
ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group] g... 65 1e-18
gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa ... 65 2e-17
>emb|CCA66036.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1369
Score = 74.7 bits (182), Expect(2) = 2e-22
Identities = 54/208 (25%), Positives = 90/208 (43%), Gaps = 11/208 (5%)
Frame = +3
Query: 12 VGSGKDINIWTDSWIPEV----LHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLF 179
+G G+D IW D W+P + + + P KV +LI N R W +++LN LF
Sbjct: 935 IGDGRDTTIWGDPWVPSLERYSIAATEGVSEDDGP--QKVCELIS-NDR-WNVELLNTLF 990
Query: 180 DINASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAYHQLSLRY-----VTNVNHNTSL 344
S +I I + D+ ++KNGQ +V+SAY+ L T+ N L
Sbjct: 991 QPWESTAIQRIPVALQKKPDQWMWMMSKNGQFTVRSAYYHELLEDRKTGPSTSRGPNLKL 1050
Query: 345 --AFWRNDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCP 518
W+ + P+ LF+WK H+ + ++ D C C E HL+ C
Sbjct: 1051 WQKIWKAKIPPKVKLFSWKAIHNGLAVYTNMRKRGMNIDGACPRCGEKEETTEHLIWGCD 1110
Query: 519 FTRTLWFSTPWNLRLIDFENLQVKEWID 602
+ W+ +P + + E + W++
Sbjct: 1111 ESSRAWYISPLRIHTGNIEAGSFRIWVE 1138
Score = 58.5 bits (140), Expect(2) = 2e-22
Identities = 60/233 (25%), Positives = 104/233 (44%), Gaps = 8/233 (3%)
Frame = +1
Query: 625 IDKH---DWTSFCIYINWIIWLEQYRVLHDKSKPNWTHVYN-LVQGFVNALEVGLDFNLV 792
+D H +W + I W IWL + + + +K K + V V+G + E + V
Sbjct: 1141 LDTHKDTEWWALFWMICWNIWLGRNKWVFEKKKLAFQEVVERAVRGVMEFEEECAHTSPV 1200
Query: 793 NFQPISLERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSNGCFIAA----GTNREK 960
W P +G VKLN+D + ++ IG+G V+RD+ G + A G E
Sbjct: 1201 ETLNTHENGWSVPPVGMVKLNVDAAVFKHV--GIGMGGVVRDAEGDVLLATCCGGWAMED 1258
Query: 961 GRTAE*AECQEALKGIQWCWKFRSSVELELYVKDVCNFLDKQPSSISRYSKIILEDVLEE 1140
AE + LK + + FR+ V +E+ K + L + S ++ + +++ +D+L
Sbjct: 1259 PAMAEACSLRYGLK-VAYEAGFRNLV-VEMDCKKLFLQLRGKASDVTPFGRVV-DDILYL 1315
Query: 1141 LVTFDNISIKWINRSANSVAHKLASYG*NLPPSSEWLTLPPSWLMNYLKDDRL 1299
N+ + + R N VAH LA N WL PS + + + D++
Sbjct: 1316 ASKCSNVVFEHVKRHCNKVAHLLAQMCKNAMEKRVWLEEYPSEVSSAVLLDKI 1368
>emb|CCA65997.1| hypothetical protein [Beta vulgaris subsp. vulgaris]
Length = 1363
Score = 67.0 bits (162), Expect(2) = 1e-20
Identities = 61/231 (26%), Positives = 100/231 (43%), Gaps = 5/231 (2%)
Frame = +1
Query: 613 VDWPIDKHD-WTSFCIYINWIIWLEQYRVLHD--KSKPNWTHVYNLVQGFVNALEVGLDF 783
+D+ +++HD W + W IW + + + + + P +T+ + F N ++
Sbjct: 1127 IDFNLNQHDYWVTKFTTAFWHIWCSRNKTVFECAVNHPKFTYNRVVADFFTNIRAFQVNN 1186
Query: 784 NLVNFQPISLERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSNGCFIAAGTNREKG 963
N + L RWKPP G++KLN D ++K + ++ GIG V RD+ G + R
Sbjct: 1187 TQGNGSKVVL-RWKPPHQGFLKLNTDGAWKADWENA-GIGGVFRDAVGNWELGFAKRVDA 1244
Query: 964 RTAE*AECQEALKGIQWCWKFR-SSVELELYVKDVCNFLDKQPSSISRYSKIILEDVLEE 1140
+ E AE +G+Q W +E+E K V L K + + +I+ D+
Sbjct: 1245 GSPEAAELMAIREGLQVAWDCNYHKLEVECDAKGVVQLLAKPLEAENHPLGVIVMDICIL 1304
Query: 1141 LVTFDNISIKWINRSANSVAHKLASYG*NLPPSSEWLTLPPSWLMN-YLKD 1290
L ++ I R N VAH LA+ N PP Y KD
Sbjct: 1305 LTRHWSVEFLHIKREGNKVAHCLAAEAVNQVEERVIFINPPEHAKEVYFKD 1355
Score = 60.1 bits (144), Expect(2) = 1e-20
Identities = 50/205 (24%), Positives = 88/205 (42%), Gaps = 7/205 (3%)
Frame = +3
Query: 9 QVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTR-TWKIDILNFLFDI 185
++G+G+ ++W W+ +V + + P + + ++ R W ++ L
Sbjct: 928 RIGNGRSTSLWYHWWVGG--GPLVDVMGSNIPEFMSHWQVSNIIKRGRWDTKKISHLLPP 985
Query: 186 NASLSIHNIYIPRNNPV-DKLH*TLTKNGQHSVKSAYHQLSLRYVTNVNHNTSLAFWRND 362
+ I I + + V D KNG SVKSAY+ ++ R + WR +
Sbjct: 986 DILKQIKEIPLASMSEVEDDFTWNFEKNGTFSVKSAYYLINRREEETGGKGSWRGLWRKN 1045
Query: 363 LRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCPFTRTLWFS 542
+ + L W H+I+PT L+ + + C+ C+ IE + HL C ++W
Sbjct: 1046 IPFKYKLLIWNGIHNILPTALFLAKRIHNFNPQCVACDHPIEDMIHLFRDCCVASSVWIE 1105
Query: 543 -----TPWNLRLIDFENLQVKEWID 602
P N L F NL+ +EWID
Sbjct: 1106 ILKHHKPNNQNL--FFNLEWEEWID 1128
>ref|XP_003635424.1| PREDICTED: LOW QUALITY PROTEIN: putative ribonuclease H protein
At1g65750-like [Vitis vinifera]
Length = 820
Score = 70.5 bits (171), Expect(2) = 9e-20
Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 7/184 (3%)
Frame = +3
Query: 6 WQVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLFDI 185
W + SG + +W DSW+P+ + ++ P + KV +LI W+ D + F
Sbjct: 392 WSIASGTKVQVWGDSWLPDSSNRLIITPPVAGFDGIKVDELITEGL--WREDFIRDKFMA 449
Query: 186 NASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAY------HQLSLRYVTNVNHNTSLA 347
+ I +I +P ++ D++ + G+++ +S Y Q + ++V+ N A
Sbjct: 450 RDADLILSIPLPMSSREDQISWSFDARGEYTARSGYGALRCFRQSTALVASDVDSNFVWA 509
Query: 348 -FWRNDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCPFT 524
W+ P+ FAW+ + +PTR L+ C +C S +E H L+ C
Sbjct: 510 QLWKVTAPPKILNFAWRAARNCLPTRFALTIRHVDTPMCCPICRSELETTLHALVECVAA 569
Query: 525 RTLW 536
R +W
Sbjct: 570 RDVW 573
Score = 53.9 bits (128), Expect(2) = 9e-20
Identities = 57/240 (23%), Positives = 99/240 (41%), Gaps = 13/240 (5%)
Frame = +1
Query: 613 VDWPIDKHDWTSFCIY-----INWIIWLEQYRVLHDKSKPNWTHVYNLVQGFVNALEVGL 777
VDW + F ++ + W +W + V+ + W H +V G LE
Sbjct: 589 VDWLATMFAYCDFVVFAKYLAVCWGLWWRRNDVVWNGRI--W-HSQQVVNGCFTMLESWF 645
Query: 778 DFNLVNFQPISL----ERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSNGCFIAAG 945
N +++ +W+ P GW+K+N+D + P IG V RD G F+
Sbjct: 646 HANETLATAVTVPSYSSKWQKPDYGWIKINVDGAV---FPDKGAIGAVFRDHQGRFMGGF 702
Query: 946 TNREKGRTA-E*AECQEALKGIQWCW-KFRSSVELELYVKDVCNFLDKQPSSISRYSKII 1119
+T + E + + W + RS + +E V + + + + II
Sbjct: 703 AKPFPHQTLPKVVEALGVREVLSWIHERSRSRIVVETDCLRVVQAIQHKSCPNTSFGFII 762
Query: 1120 LE--DVLEELVTFDNISIKWINRSANSVAHKLASYG*NLPPSSEWLTLPPSWLMNYLKDD 1293
++ DVL+ LV ++ + + RSANS AH LA+ + W PP +++ L D
Sbjct: 763 VDCLDVLQHLV---DVQVVYARRSANSAAHCLANGACSFTSLHIWGYTPPQCILSCLHYD 819
>ref|NP_001175214.1| Os07g0501200 [Oryza sativa Japonica Group]
gi|255677791|dbj|BAH93942.1| Os07g0501200 [Oryza sativa
Japonica Group]
Length = 620
Score = 64.7 bits (156), Expect(2) = 1e-18
Identities = 55/188 (29%), Positives = 83/188 (44%), Gaps = 8/188 (4%)
Frame = +3
Query: 3 MWQVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLFD 182
+W+VG+G I IW D W+P PI N V DL++ N W ++ + F+
Sbjct: 164 IWRVGNGHSIRIWRDPWLPRDFSRR-PITRKGNCRIKWVPDLLNDNGE-WDLERIQQHFN 221
Query: 183 INASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAYH-QLSLRYVTNVN----HNTSLA 347
+ I I R+ D + K+G SV+SAYH +SL V + + H+ S A
Sbjct: 222 QIDTDIILKIRPSRSQEADFVAWHPDKHGIFSVRSAYHLAVSLANVNSSSSSSGHDLSKA 281
Query: 348 F---WRNDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVCP 518
+ W ++ + +FAWK + + T + T C +C E V H L CP
Sbjct: 282 WKLVWNCNIPQKVKIFAWKAATNSLATLQNKKTRRLEPMAICSICGREEEDVAHALCRCP 341
Query: 519 FTRTLWFS 542
LW S
Sbjct: 342 HATNLWLS 349
Score = 55.8 bits (133), Expect(2) = 1e-18
Identities = 59/224 (26%), Positives = 93/224 (41%), Gaps = 25/224 (11%)
Frame = +1
Query: 625 IDKHDWTSFCIYINWIIWLEQYRVLHDKSKPNWTHVYNLVQGFVNALEVGLDFNLVNF-- 798
I K + F + + W IW + + H KS P + + + +V++L F +F
Sbjct: 377 IAKEEGAMFLMLL-WRIWYNRNEIYHGKSAPPVSVSHRFIVSYVSSLREIKQFPRADFAK 435
Query: 799 ------------------QPISLERWKPPQIGWVKLNIDVSFKTNIPHSIGIGYVLRDSN 924
P L W+ P GW+KLN+D SF S GIG VLR+S
Sbjct: 436 GKFVVSNLGCMKGTSQVPDPKVLNHWEKPNPGWMKLNVDGSFDARY-GSGGIGAVLRNSA 494
Query: 925 GCFIAAGTNREKGRT--AE*AECQEA-LKGIQWCWKFRSSVELELYVKDVCNFLDKQPSS 1095
G I G G AE C+E + +QW ++ + D L +
Sbjct: 495 GSLIFCGNMSRCGGALEAELLACREGIIMALQW------TLLPFIVETDSLELLKLVGAG 548
Query: 1096 ISRYSKI--ILEDVLEELVTFDNISIKWINRSANSVAHKLASYG 1221
S S++ ++++V + L I I+ I+R N V+ LA+ G
Sbjct: 549 SSDRSELAFLVKEVRDPLSGNREIIIRKIHRENNCVSDFLANKG 592
>gb|AFP55557.1| non-ltr retroelement reverse transcriptase [Rosa rugosa]
Length = 1747
Score = 65.1 bits (157), Expect(2) = 2e-17
Identities = 45/176 (25%), Positives = 73/176 (41%), Gaps = 6/176 (3%)
Frame = +3
Query: 6 WQVGSGKDINIWTDSWIPEVLHGIVPIPTIHNPLYSKVVDLIDVNTRTWKIDILNFLFDI 185
W++G GK++ ++ D W+P L PI PL+ +V DL+ N W ++ LN+ F
Sbjct: 1211 WRIGDGKEVRVFIDPWVPG-LPSFRPILRQGAPLFLRVSDLLH-NNGGWNMEALNYWFTD 1268
Query: 186 NASLSIHNIYIPRNNPVDKLH*TLTKNGQHSVKSAY------HQLSLRYVTNVNHNTSLA 347
+ +I +I + D KNG+++VKS Y ++ + N
Sbjct: 1269 DECEAISSITVGATRRPDVYMWNYCKNGRYTVKSGYWLACEENREEAINIVLAPRNFWKH 1328
Query: 348 FWRNDLRPRETLFAWKCYHSIIPTRDHLSTLFYVADKTCLLCNSFIEYVHHLLLVC 515
W+ L P+ F W+C IP + L +C C E H C
Sbjct: 1329 LWKLKLPPKINHFLWRCSMGFIPCMEVLLWKHIAHSASCFRCQQGRESPVHATWGC 1384
Score = 51.2 bits (121), Expect(2) = 2e-17
Identities = 56/235 (23%), Positives = 100/235 (42%), Gaps = 11/235 (4%)
Frame = +1
Query: 625 IDKHDWTSFCIYINWIIWLEQYRVLHDKSKPNWTHVYN----LVQGFVNAL--EVGLDFN 786
+DK + F + + W+ W E+ H + +Y ++ F AL G++
Sbjct: 1419 LDKEELQLFAVLL-WLNWHERNNCYHKGAVVPSDIIYENGVKFLKCFKEALGCRAGVEVK 1477
Query: 787 LVN-FQPISLERWKPPQIGWVKLNID--VSFKTNIPHSIGIGYVLRDSNGCFI-AAGTNR 954
V P SL RW+ P G +K+N D +FK G G ++RD G I A G N
Sbjct: 1478 AVEEVVPGSLRRWQAPSSGQLKVNCDGAANFK---DRCFGGGTIIRDEFGSLIVAGGKNF 1534
Query: 955 EKGRTAE*AECQEALKGIQWCWKFR-SSVELELYVKDVCNFLDKQPSSISRYSKIILEDV 1131
+ ++ AE G+ + R ++ +E + + L+ + ++ ++ ED+
Sbjct: 1535 QHPVSSLVAELLAIKVGLDLVVERRLRNIMVESDCLEAIHLLNSKERCLAPEGGLV-EDI 1593
Query: 1132 LEELVTFDNISIKWINRSANSVAHKLASYG*NLPPSSEWLTLPPSWLMNYLKDDR 1296
+ + SI + R N+ AH +A + WL P WLM+ + D+
Sbjct: 1594 QNTMALVNISSIYHVRREGNTAAHAIAKFVARNNGRYVWLEDGPDWLMSLICHDK 1648