BLASTX 2.2.25 [Feb-01-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= Coptis25_contig00008379
         (992 letters)

Database: ./nr 
           23,641,837 sequences; 8,123,359,852 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

emb|CBI40152.3| unnamed protein product [Vitis vinifera]              229   1e-57
ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E sub...   229   1e-57
ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E sub...   222   1e-55
ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed...   222   1e-55
ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|2...   220   4e-55

>emb|CBI40152.3| unnamed protein product [Vitis vinifera]
          Length = 1890

 Score =  229 bits (583), Expect = 1e-57
 Identities = 112/188 (59%), Positives = 141/188 (75%), Gaps = 4/188 (2%)
 Frame = -3

Query: 987  EQKRDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWNGSGNL 820
            E +    WG       GKK  P G RGWGS+N+ EWK  KNRP K  G   D+++  G  
Sbjct: 1675 ESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNRPNKPQGPLNDDYSAGGIF 1729

Query: 819  TATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENAFNYHP 640
            TATRQR+D FTSEEQ IL DVEP++Q+++RIM Q GY DG+PLS DDQSY+L+  FN HP
Sbjct: 1730 TATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHP 1789

Query: 639  DKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPEMAEAF 460
            DKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYRKC+ENFIKEKYP+ AE F
Sbjct: 1790 DKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETF 1849

Query: 459  ISKYFRKP 436
            I KYFR+P
Sbjct: 1850 IGKYFRRP 1857


>ref|XP_002265533.1| PREDICTED: DNA-directed RNA polymerase E subunit 1 [Vitis vinifera]
          Length = 1830

 Score =  229 bits (583), Expect = 1e-57
 Identities = 112/188 (59%), Positives = 141/188 (75%), Gaps = 4/188 (2%)
 Frame = -3

Query: 987  EQKRDLPWGPSMMHDQGKK--PSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWNGSGNL 820
            E +    WG       GKK  P G RGWGS+N+ EWK  KNRP K  G   D+++  G  
Sbjct: 1615 ESETQSQWG----QPSGKKSRPEGSRGWGSNNT-EWKNKKNRPNKPQGPLNDDYSAGGIF 1669

Query: 819  TATRQRLDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENAFNYHP 640
            TATRQR+D FTSEEQ IL DVEP++Q+++RIM Q GY DG+PLS DDQSY+L+  FN HP
Sbjct: 1670 TATRQRVDIFTSEEQDILLDVEPIMQSIRRIMHQAGYNDGDPLSADDQSYILDKVFNNHP 1729

Query: 639  DKAVKMGAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPEMAEAF 460
            DKAVKMG G+DYVM+ ++S + +SRC+++VSTDG ++DFSYRKC+ENFIKEKYP+ AE F
Sbjct: 1730 DKAVKMGTGIDYVMVSRHSSFLESRCFYVVSTDGHKEDFSYRKCLENFIKEKYPDNAETF 1789

Query: 459  ISKYFRKP 436
            I KYFR+P
Sbjct: 1790 IGKYFRRP 1797


>ref|XP_004155767.1| PREDICTED: DNA-directed RNA polymerase E subunit 1-like [Cucumis
            sativus]
          Length = 1959

 Score =  222 bits (565), Expect = 1e-55
 Identities = 100/175 (57%), Positives = 138/175 (78%), Gaps = 2/175 (1%)
 Frame = -3

Query: 948  HDQGKKPSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWNGSGNLTATRQRLDQFTSEEQ 775
            H   KK  G +GWG  N+GEWK  KNRP KSPG   D+ N     TA+ QRLD FTSEEQ
Sbjct: 1751 HGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQ 1809

Query: 774  QILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENAFNYHPDKAVKMGAGVDYVMI 595
             IL+D+EP++Q+++++M Q GY DG+PLS +DQS+VL++ FN+HPDKA KMGAG+D+ M+
Sbjct: 1810 DILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMV 1869

Query: 594  DKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPEMAEAFISKYFRKPNP 430
             ++S + +SRC+++V+TDG ++DFSYRKC++NFIK KYP++AE F++KYFRKP P
Sbjct: 1870 SRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRP 1924


>ref|XP_004140346.1| PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase E subunit
            1-like [Cucumis sativus]
          Length = 2019

 Score =  222 bits (565), Expect = 1e-55
 Identities = 100/175 (57%), Positives = 138/175 (78%), Gaps = 2/175 (1%)
 Frame = -3

Query: 948  HDQGKKPSGPRGWGSSNSGEWK-LKNRPAKSPGKW-DEWNGSGNLTATRQRLDQFTSEEQ 775
            H   KK  G +GWG  N+GEWK  KNRP KSPG   D+ N     TA+ QRLD FTSEEQ
Sbjct: 1811 HGWDKKNQGSKGWGG-NAGEWKNRKNRPPKSPGMSNDDANLRALYTASGQRLDMFTSEEQ 1869

Query: 774  QILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENAFNYHPDKAVKMGAGVDYVMI 595
             IL+D+EP++Q+++++M Q GY DG+PLS +DQS+VL++ FN+HPDKA KMGAG+D+ M+
Sbjct: 1870 DILADIEPIMQSIRKVMHQSGYNDGDPLSAEDQSFVLQSVFNFHPDKAAKMGAGIDHFMV 1929

Query: 594  DKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPEMAEAFISKYFRKPNP 430
             ++S + +SRC+++V+TDG ++DFSYRKC++NFIK KYP++AE F++KYFRKP P
Sbjct: 1930 SRHSSFQESRCFYVVTTDGHKEDFSYRKCLDNFIKGKYPDLAEMFVAKYFRKPRP 1984


>ref|XP_002303926.1| predicted protein [Populus trichocarpa] gi|222841358|gb|EEE78905.1|
            predicted protein [Populus trichocarpa]
          Length = 1020

 Score =  220 bits (561), Expect = 4e-55
 Identities = 106/185 (57%), Positives = 139/185 (75%), Gaps = 1/185 (0%)
 Frame = -3

Query: 978  RDLPWGPSMMHDQGKKPSGPRGWGSSNSGEWKLK-NRPAKSPGKWDEWNGSGNLTATRQR 802
            RD  WG      +  +  G RGWGS+N G+WK K NRP+K     ++ N SG  T TRQR
Sbjct: 824  RDQQWGQQSREFKKDRFEGSRGWGSNN-GDWKNKRNRPSKPH---EDLNASGIFTTTRQR 879

Query: 801  LDQFTSEEQQILSDVEPVIQALQRIMRQPGYKDGNPLSPDDQSYVLENAFNYHPDKAVKM 622
            LD FTS+EQ ILSD+EP++ +++RIM Q GY DG+PLS DDQSYVL+N F+YHPDKAVKM
Sbjct: 880  LDVFTSQEQDILSDIEPLMLSIRRIMHQTGYNDGDPLSADDQSYVLDNVFHYHPDKAVKM 939

Query: 621  GAGVDYVMIDKNSKYPDSRCYHIVSTDGRRDDFSYRKCVENFIKEKYPEMAEAFISKYFR 442
            GAG+D+V + ++S + +SRC++IVSTDG + DFSYRKC+ENFIK KYP++A+ FI+KYF 
Sbjct: 940  GAGIDHVTVSRHSNFQESRCFYIVSTDGCKQDFSYRKCLENFIKGKYPDLADEFIAKYFA 999

Query: 441  KPNPR 427
            +   R
Sbjct: 1000 RRGNR 1004