BLASTX nr result
ID: Coptis25_contig00008361
seq
BLASTX 2.2.25 [Feb-01-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= Coptis25_contig00008361
(275 letters)
Database: ./nr
23,641,837 sequences; 8,123,359,852 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containi... 167 8e-40
ref|XP_002305120.1| predicted protein [Populus trichocarpa] gi|2... 159 2e-37
ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containi... 154 9e-36
emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera] 154 9e-36
ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group] g... 145 3e-33
>ref|XP_003545972.1| PREDICTED: pentatricopeptide repeat-containing protein At3g57430,
chloroplastic-like [Glycine max]
Length = 858
Score = 167 bits (423), Expect = 8e-40
Identities = 76/90 (84%), Positives = 86/90 (95%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N+LVNMYAKCGSIEDADRAFS+IP +GIVSWSAMIGG+AQHG+GKEALRLF+QM++DGVP
Sbjct: 525 NSLVNMYAKCGSIEDADRAFSEIPNRGIVSWSAMIGGYAQHGHGKEALRLFNQMLRDGVP 584
Query: 185 PNHITLVSVLCACNHAGMVTEAKEYFESME 274
PNHITLVSVLCACNHAG+V E K+YFE ME
Sbjct: 585 PNHITLVSVLCACNHAGLVNEGKQYFEKME 614
Score = 67.4 bits (163), Expect = 1e-09
Identities = 31/73 (42%), Positives = 46/73 (63%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N LV MYAKCG ++D+ R F I E+ +VSW+A+ + Q EA+ LF +MV+ G+
Sbjct: 121 NTLVVMYAKCGLLDDSRRLFGGIVERNVVSWNALFSCYVQSELCGEAVGLFKEMVRSGIM 180
Query: 185 PNHITLVSVLCAC 223
PN ++ +L AC
Sbjct: 181 PNEFSISIILNAC 193
Score = 64.3 bits (155), Expect = 1e-08
Identities = 29/68 (42%), Positives = 48/68 (70%)
Frame = +2
Query: 11 LVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVPPN 190
LV+MY+KC ++DA RA+ +P+K I++W+A+I G++Q G +A+ LFS+M + + N
Sbjct: 325 LVDMYSKCEMMDDARRAYDSMPKKDIIAWNALISGYSQCGDHLDAVSLFSKMFSEDIDFN 384
Query: 191 HITLVSVL 214
TL +VL
Sbjct: 385 QTTLSTVL 392
Score = 62.0 bits (149), Expect = 5e-08
Identities = 35/89 (39%), Positives = 44/89 (49%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
NALV+MY+K G IE A F I +VSW+A+I G H AL L +M G
Sbjct: 222 NALVDMYSKAGEIEGAVAVFQDIAHPDVVSWNAIIAGCVLHDCNDLALMLLDEMKGSGTR 281
Query: 185 PNHITLVSVLCACNHAGMVTEAKEYFESM 271
PN TL S L AC G ++ S+
Sbjct: 282 PNMFTLSSALKACAAMGFKELGRQLHSSL 310
Score = 58.5 bits (140), Expect = 5e-07
Identities = 29/74 (39%), Positives = 45/74 (60%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N LV +Y+KC A + + E +VSWS+++ G+ Q+G+ +EAL +F++M GV
Sbjct: 20 NHLVTLYSKCRRFGYARKLVDESSELDVVSWSSLLSGYVQNGFVEEALLVFNEMCLLGVK 79
Query: 185 PNHITLVSVLCACN 226
N T SVL AC+
Sbjct: 80 CNEFTFPSVLKACS 93
Score = 56.6 bits (135), Expect = 2e-06
Identities = 26/84 (30%), Positives = 51/84 (60%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N+L++ Y KC I++A + F + + +V++++MI ++Q+G G+EAL+L+ QM +
Sbjct: 424 NSLLDTYGKCNHIDEASKIFEERTWEDLVAYTSMITAYSQYGDGEEALKLYLQMQDADIK 483
Query: 185 PNHITLVSVLCACNHAGMVTEAKE 256
P+ S+L AC + + K+
Sbjct: 484 PDPFICSSLLNACANLSAYEQGKQ 507
>ref|XP_002305120.1| predicted protein [Populus trichocarpa] gi|222848084|gb|EEE85631.1|
predicted protein [Populus trichocarpa]
Length = 786
Score = 159 bits (402), Expect = 2e-37
Identities = 75/91 (82%), Positives = 82/91 (90%)
Frame = +2
Query: 2 GNALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGV 181
GN+LVNMYAKCGSIEDA AFS+IP +GIVSWSAMIGG AQHGYGKEAL+LF QM+K GV
Sbjct: 452 GNSLVNMYAKCGSIEDASCAFSRIPVRGIVSWSAMIGGLAQHGYGKEALQLFKQMLKVGV 511
Query: 182 PPNHITLVSVLCACNHAGMVTEAKEYFESME 274
PPNHITLVSVLCACNHAG+V EAK YF SM+
Sbjct: 512 PPNHITLVSVLCACNHAGLVAEAKHYFNSMK 542
Score = 72.0 bits (175), Expect = 5e-11
Identities = 40/78 (51%), Positives = 48/78 (61%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
NALV+MYAK G +EDA F +I + IVSW+A+I G H Y AL L +M K G+
Sbjct: 150 NALVDMYAKVGILEDASSVFDEIAKPDIVSWNAIIAGCVLHEYHHRALELLREMNKSGMC 209
Query: 185 PNHITLVSVLCACNHAGM 238
PN TL S L AC AGM
Sbjct: 210 PNMFTLSSALKAC--AGM 225
Score = 65.9 bits (159), Expect = 3e-09
Identities = 30/84 (35%), Positives = 50/84 (59%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N+L++ Y KCG +EDA R F + P +V +++++ +AQ G G+EALRL+ +M G+
Sbjct: 352 NSLIDTYGKCGHVEDATRVFEESPIVDLVLFTSLVTAYAQDGQGEEALRLYLEMQDRGIK 411
Query: 185 PNHITLVSVLCACNHAGMVTEAKE 256
P+ S+L AC + K+
Sbjct: 412 PDSFVCSSLLNACASLSAYEQGKQ 435
Score = 63.2 bits (152), Expect = 2e-08
Identities = 29/73 (39%), Positives = 42/73 (57%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N+LV +YAKCG DA F IP++ +VSW+A+ + EA+ LF MV G+
Sbjct: 49 NSLVILYAKCGGFGDARSLFDAIPDRSVVSWNALFSCYVHSDMHGEAVSLFHDMVLSGIR 108
Query: 185 PNHITLVSVLCAC 223
PN +L S++ C
Sbjct: 109 PNEFSLSSMINVC 121
Score = 60.1 bits (144), Expect = 2e-07
Identities = 28/71 (39%), Positives = 46/71 (64%)
Frame = +2
Query: 2 GNALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGV 181
G L++MY+KC S++DA F +PE+ +++W+A+I G +Q+ +EA LF M +G+
Sbjct: 250 GVGLIDMYSKCNSMDDARLVFKLMPERDMIAWNAVISGHSQNEEDEEAASLFPLMHTEGI 309
Query: 182 PPNHITLVSVL 214
N TL +VL
Sbjct: 310 GFNQTTLSTVL 320
>ref|XP_002273710.2| PREDICTED: pentatricopeptide repeat-containing protein
At4g13650-like [Vitis vinifera]
Length = 933
Score = 154 bits (388), Expect = 9e-36
Identities = 72/91 (79%), Positives = 85/91 (93%)
Frame = +2
Query: 2 GNALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGV 181
GN+LVNMYAKCGSI+DA RAFS++ E+GIVSWSAMIGG AQHG+G++AL+LF+QM+K+GV
Sbjct: 599 GNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 658
Query: 182 PPNHITLVSVLCACNHAGMVTEAKEYFESME 274
PNHITLVSVL ACNHAG+VTEAK YFESME
Sbjct: 659 SPNHITLVSVLGACNHAGLVTEAKLYFESME 689
Score = 73.2 bits (178), Expect = 2e-11
Identities = 38/89 (42%), Positives = 52/89 (58%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
NALV+MYAK G + DA F KI + IVSW+A+I G H + ++AL L QM + G+
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQMKRSGIC 356
Query: 185 PNHITLVSVLCACNHAGMVTEAKEYFESM 271
PN TL S L AC G+ ++ S+
Sbjct: 357 PNIFTLSSALKACAGMGLKELGRQLHSSL 385
Score = 68.6 bits (166), Expect = 5e-10
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +2
Query: 11 LVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVPPN 190
LV+MY+KC +EDA AF+ +PEK +++W+A+I G++Q+ EAL LF +M K+G+ N
Sbjct: 400 LVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFN 459
Query: 191 HITLVSVL 214
TL ++L
Sbjct: 460 QTTLSTIL 467
Score = 68.2 bits (165), Expect = 7e-10
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N LV MYAKC D+ R F +IPE+ +VSW+A+ + Q + EA+ LF +MV G+
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQIDFCGEAVGLFYEMVLSGIK 255
Query: 185 PNHITLVSVLCAC 223
PN +L S++ AC
Sbjct: 256 PNEFSLSSMVNAC 268
Score = 63.5 bits (153), Expect = 2e-08
Identities = 30/84 (35%), Positives = 51/84 (60%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N+L++ Y KC +EDA+R F + +VS+++MI +AQ+G G+EAL+LF +M +
Sbjct: 499 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 558
Query: 185 PNHITLVSVLCACNHAGMVTEAKE 256
P+ S+L AC + + K+
Sbjct: 559 PDRFVCSSLLNACANLSAFEQGKQ 582
Score = 60.8 bits (146), Expect = 1e-07
Identities = 32/74 (43%), Positives = 44/74 (59%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N L+N+Y+KC + A + + E +VSWSA+I G+AQ+G G AL F +M GV
Sbjct: 95 NHLINLYSKCRNFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154
Query: 185 PNHITLVSVLCACN 226
N T SVL AC+
Sbjct: 155 CNEFTFSSVLKACS 168
>emb|CAN74095.1| hypothetical protein VITISV_023708 [Vitis vinifera]
Length = 906
Score = 154 bits (388), Expect = 9e-36
Identities = 72/91 (79%), Positives = 85/91 (93%)
Frame = +2
Query: 2 GNALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGV 181
GN+LVNMYAKCGSI+DA RAFS++ E+GIVSWSAMIGG AQHG+G++AL+LF+QM+K+GV
Sbjct: 572 GNSLVNMYAKCGSIDDAGRAFSELTERGIVSWSAMIGGLAQHGHGRQALQLFNQMLKEGV 631
Query: 182 PPNHITLVSVLCACNHAGMVTEAKEYFESME 274
PNHITLVSVL ACNHAG+VTEAK YFESME
Sbjct: 632 SPNHITLVSVLGACNHAGLVTEAKLYFESME 662
Score = 68.9 bits (167), Expect = 4e-10
Identities = 32/73 (43%), Positives = 46/73 (63%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N LV MYAKC D+ R F +IPE+ +VSW+A+ + Q + EA+ LF +MV G+
Sbjct: 196 NTLVVMYAKCDEFLDSKRLFDEIPERNVVSWNALFSCYVQXDFCGEAVGLFYEMVLSGIK 255
Query: 185 PNHITLVSVLCAC 223
PN +L S++ AC
Sbjct: 256 PNEFSLSSMVNAC 268
Score = 68.6 bits (166), Expect = 5e-10
Identities = 31/68 (45%), Positives = 49/68 (72%)
Frame = +2
Query: 11 LVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVPPN 190
LV+MY+KC +EDA AF+ +PEK +++W+A+I G++Q+ EAL LF +M K+G+ N
Sbjct: 373 LVDMYSKCDLLEDARMAFNLLPEKDLIAWNAIISGYSQYWEDMEALSLFVEMHKEGIGFN 432
Query: 191 HITLVSVL 214
TL ++L
Sbjct: 433 QTTLSTIL 440
Score = 63.5 bits (153), Expect = 2e-08
Identities = 30/84 (35%), Positives = 51/84 (60%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N+L++ Y KC +EDA+R F + +VS+++MI +AQ+G G+EAL+LF +M +
Sbjct: 472 NSLIDSYGKCSHVEDAERIFEECTIGDLVSFTSMITAYAQYGQGEEALKLFLEMQDMELK 531
Query: 185 PNHITLVSVLCACNHAGMVTEAKE 256
P+ S+L AC + + K+
Sbjct: 532 PDRFVCSSLLNACANLSAFEQGKQ 555
Score = 60.1 bits (144), Expect = 2e-07
Identities = 32/74 (43%), Positives = 43/74 (58%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
N L+N+Y+KC A + + E +VSWSA+I G+AQ+G G AL F +M GV
Sbjct: 95 NHLINLYSKCRXFGYARKLVDESSEPDLVSWSALISGYAQNGLGGGALMAFHEMHLLGVK 154
Query: 185 PNHITLVSVLCACN 226
N T SVL AC+
Sbjct: 155 CNEFTFSSVLKACS 168
Score = 55.5 bits (132), Expect = 5e-06
Identities = 27/54 (50%), Positives = 35/54 (64%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQM 166
NALV+MYAK G + DA F KI + IVSW+A+I G H + ++AL L QM
Sbjct: 297 NALVDMYAKVGDLADAISVFEKIKQPDIVSWNAVIAGCVLHEHHEQALELLGQM 350
>ref|NP_001172331.1| Os01g0355000 [Oryza sativa Japonica Group]
gi|53791352|dbj|BAD52598.1| pentatricopeptide (PPR)
repeat-containing protein-like [Oryza sativa Japonica
Group] gi|215768699|dbj|BAH00928.1| unnamed protein
product [Oryza sativa Japonica Group]
gi|255673214|dbj|BAH91061.1| Os01g0355000 [Oryza sativa
Japonica Group]
Length = 877
Score = 145 bits (366), Expect = 3e-33
Identities = 66/91 (72%), Positives = 77/91 (84%)
Frame = +2
Query: 2 GNALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGV 181
GNALV YAKCGSIEDA+ AFS +PE+G+VSWSAMIGG AQHG+GK AL LF +MV +G+
Sbjct: 543 GNALVYTYAKCGSIEDAELAFSSLPERGVVSWSAMIGGLAQHGHGKRALELFGRMVDEGI 602
Query: 182 PPNHITLVSVLCACNHAGMVTEAKEYFESME 274
PNHIT+ SVLCACNHAG+V EAK YF SM+
Sbjct: 603 NPNHITMTSVLCACNHAGLVDEAKRYFNSMK 633
Score = 69.7 bits (169), Expect = 2e-10
Identities = 34/77 (44%), Positives = 48/77 (62%)
Frame = +2
Query: 5 NALVNMYAKCGSIEDADRAFSKIPEKGIVSWSAMIGGFAQHGYGKEALRLFSQMVKDGVP 184
NALV+MY K G ++ A F K+P+ +VSW+A+I G +G+ A+ L QM G+
Sbjct: 241 NALVDMYMKMGRVDIASVIFEKMPDSDVVSWNALISGCVLNGHDHRAIELLLQMKYSGLV 300
Query: 185 PNHITLVSVLCACNHAG 235
PN TL S+L AC+ AG
Sbjct: 301 PNVFTLSSILKACSGAG 317